Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 0.0e+00 1214.9 567 100.0
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1099.3 550 93.6
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 7.8e-312 1073.2 549 91.3
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 9.4e-309 1062.8 550 90.0
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.6e-298 1028.1 535 89.2
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 7.0e-296 1020.0 535 88.6
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.8e-292 1008.1 572 83.6
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 8.0e-292 1006.5 566 84.3
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 5.8e-290 1000.3 572 83.0
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 1.7e-289 998.8 550 84.0
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 4.9e-289 997.3 526 87.5
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 4.1e-288 994.2 538 85.3
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 2.0e-287 991.9 541 83.9
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 2.0e-287 991.9 549 83.6
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 6.6e-286 986.9 544 84.0
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 6.6e-286 986.9 520 87.7
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 3.3e-285 984.6 537 84.5
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 6.2e-284 980.3 549 84.3
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 8.0e-284 979.9 537 84.9
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 1.1e-283 979.5 563 81.3
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 1.8e-283 978.8 539 82.4
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 2.3e-283 978.4 541 83.5
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 3.1e-283 978.0 550 82.4
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 4.0e-283 977.6 549 80.9
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 6.8e-283 976.9 542 83.6
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 2.0e-282 975.3 533 84.6
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 2.9e-281 971.5 537 83.4
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 2.9e-281 971.5 537 83.6
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 1.1e-280 969.5 537 83.4
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 7.0e-280 966.8 549 81.2
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 1.0e-278 963.0 554 81.9
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 1.3e-278 962.6 539 81.4
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 1.3e-278 962.6 539 82.9
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 2.3e-278 961.8 561 80.0
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 3.0e-278 961.4 538 83.3
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 6.6e-278 960.3 515 85.6
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 8.6e-278 959.9 549 80.7
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 8.6e-278 959.9 515 84.7
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 1.5e-277 959.1 544 81.6
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 1.5e-277 959.1 520 85.8
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 1.9e-277 958.7 512 85.7
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 4.3e-277 957.6 520 85.6
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 5.6e-277 957.2 523 83.6
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 9.5e-277 956.4 521 84.3
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 1.2e-276 956.1 545 80.9
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 1.6e-276 955.7 541 81.0
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 4.7e-276 954.1 546 82.2
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 6.2e-276 953.7 540 80.4
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 1.4e-275 952.6 537 81.8
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 6.8e-275 950.3 542 80.6
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 1.5e-274 949.1 539 82.4
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 2.0e-274 948.7 540 81.5
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 2.0e-274 948.7 569 77.5
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 7.5e-274 946.8 537 82.9
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 7.5e-274 946.8 561 77.5
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 4.9e-273 944.1 512 83.6
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 6.4e-273 943.7 548 80.3
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 3.2e-272 941.4 519 80.9
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 4.1e-272 941.0 521 82.9
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 5.4e-272 940.6 554 79.1
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 3.5e-271 937.9 544 77.6
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 7.8e-271 936.8 520 80.8
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 1.0e-270 936.4 520 81.9
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 1.3e-270 936.0 521 82.9
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 5.1e-270 934.1 519 80.2
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 5.1e-270 934.1 520 80.4
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 5.1e-270 934.1 520 80.4
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 1.5e-269 932.6 545 77.2
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 1.5e-269 932.6 534 81.3
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 1.9e-269 932.2 683 67.6
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 2.5e-269 931.8 545 77.2
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 2.5e-269 931.8 545 77.2
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 2.5e-269 931.8 545 77.4
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 4.3e-269 931.0 521 81.6
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 1.1e-267 926.4 519 80.3
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 1.4e-267 926.0 544 77.8
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 2.4e-267 925.2 519 80.5
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 5.2e-267 924.1 519 80.2
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 3.8e-265 917.9 540 78.3
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 4.9e-265 917.5 505 81.0
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 4.9e-265 917.5 521 79.1
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 8.4e-265 916.8 552 75.4
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 8.4e-265 916.8 535 78.7
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 1.2e-263 912.9 523 80.3
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 1.1e-261 906.4 551 77.0
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 6.9e-259 897.1 521 80.2
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 3.4e-258 894.8 733 60.3
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 1.7e-257 892.5 524 77.3
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 2.4e-256 888.6 537 77.3
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 3.9e-254 881.3 545 74.7
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 3.4e-242 841.6 467 83.1
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 2.9e-241 838.6 541 73.0
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 1.1e-232 810.1 495 74.5
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 1.3e-230 803.1 521 73.1
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 2.3e-230 802.4 459 78.9
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 3.7e-228 795.0 541 70.8
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 3.0e-222 775.4 451 80.7
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 2.3e-214 749.2 542 66.8
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 6.7e-214 747.7 519 68.8
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 8.8e-214 747.3 541 67.3
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 2.8e-212 742.3 482 72.6
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 7.0e-211 737.6 520 64.0
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 1.3e-209 733.4 546 62.8
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.2e-201 706.1 414 77.5
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.6e-194 683.3 547 60.5
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 5.9e-194 681.4 468 70.5
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 4.2e-192 675.2 540 58.3
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 4.7e-183 645.2 354 84.2
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 8.3e-180 634.4 466 62.9
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 1.2e-178 630.6 420 71.9
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 3.2e-139 499.6 292 80.1
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 1.1e-120 438.0 240 85.4
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 7.7e-109 398.7 430 50.0
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 1.2e-80 305.1 176 81.2
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 8.3e-79 298.9 155 84.5
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 1.0e-73 282.0 226 62.8
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 1.2e-64 251.9 131 85.5
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.7e-52 211.5 162 59.9
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 6.6e-52 209.5 342 38.0
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 8.9e-49 199.1 154 59.7
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 3.5e-45 187.2 108 81.5
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 7.8e-45 186.0 135 65.2
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 9.5e-43 179.1 83 95.2
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 1.5e-40 171.8 111 73.9
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 6.6e-36 156.4 97 72.2
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.1e-34 151.4 103 71.8
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 8.7e-28 129.4 211 35.5
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 1.1e-27 129.0 72 80.6
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.9e-22 111.7 82 67.1
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 2.4e-22 111.3 51 92.2
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.4e-22 110.2 69 71.0
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 9.3e-22 109.4 80 63.8
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 9.3e-22 109.4 71 70.4
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.7e-21 107.8 58 79.3
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.7e-21 107.8 58 79.3
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 4.6e-21 107.1 225 29.3
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.7e-20 105.1 80 61.2
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 1.7e-20 105.1 205 29.8
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 6.6e-20 103.2 140 44.3
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 8.1e-18 96.3 208 26.9
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.0e-17 94.0 73 63.0
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.0e-17 94.0 73 63.0
Nitab4.5_0002879g0120 Nicotiana tabacum HOM05D001762 ORTHO05D001774 2.9e-15 87.8 242 26.9
CAN.G862.26 Capsicum annuum HOM05D001762 ORTHO05D001774 6.4e-15 86.7 175 29.1
Solyc03g121960.3 Solanum lycopersicum HOM05D001762 ORTHO05D001774 8.4e-15 86.3 175 28.6
PGSC0003DMG400002483 Solanum tuberosum HOM05D001762 ORTHO05D001774 8.4e-15 86.3 175 28.6
Sopen03g040780 Solanum pennellii HOM05D001762 ORTHO05D001774 1.1e-14 85.9 175 28.6
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 3.2e-14 84.3 68 55.9
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 1.8e-09 68.6 33 78.8
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.4e-06 58.9 31 83.9


User provided reference genes

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