Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 3.7e-152 542.0 374 100.0
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 8.4e-88 328.2 288 71.5
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 2.3e-69 266.9 281 59.8
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 6.5e-64 248.8 283 55.8
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 4.6e-62 242.7 277 58.5
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 4.6e-62 242.7 277 58.5
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 5.3e-58 229.2 277 56.0
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 1.1e-52 211.5 284 54.2
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 1.5e-52 211.1 284 54.2
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 1.2e-49 201.4 310 45.8
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 2.6e-49 200.3 311 43.4
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 4.5e-49 199.5 290 51.4
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 2.9e-48 196.8 302 49.7
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 1.1e-47 194.9 301 49.5
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 2.6e-44 183.7 302 48.3
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 6.3e-43 179.1 306 43.8
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 1.9e-39 167.5 287 45.3
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 4.7e-38 162.9 301 43.5
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 7.4e-36 155.6 292 43.5
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 1.3e-35 154.8 291 46.7
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 1.7e-35 154.5 297 40.4
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 2.8e-35 153.7 308 41.2
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 8.2e-35 152.1 297 41.4
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 8.2e-35 152.1 313 46.3
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 1.4e-34 151.4 293 47.1
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 2.4e-34 150.6 286 43.4
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 2.4e-34 150.6 309 41.1
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 7.0e-34 149.1 291 40.9
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 1.6e-33 147.9 297 40.7
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 2.0e-33 147.5 289 43.9
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 5.9e-33 146.0 325 40.0
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 1.0e-32 145.2 308 41.6
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 1.7e-32 144.4 289 44.3
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 3.8e-32 143.3 311 44.7
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 5.0e-32 142.9 283 38.9
CiPaw.03G270700 Carya illinoinensis HOM05D007706 ORTHO05D009593 6.5e-32 142.5 299 43.5
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 1.5e-31 141.4 285 42.8
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 1.9e-31 141.0 287 39.4
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 2.5e-31 140.6 292 39.7
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 3.2e-31 140.2 288 39.2
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 5.5e-31 139.4 281 45.2
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 7.2e-31 139.0 279 39.8
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 7.2e-31 139.0 281 37.7
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 7.2e-31 139.0 290 42.8
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 1.0e-29 135.2 288 38.9
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 1.0e-29 135.2 265 39.2
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 3.0e-29 133.7 289 38.1
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 6.8e-29 132.5 291 37.5
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 8.8e-29 132.1 295 39.3
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 8.8e-29 132.1 296 40.9
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 1.2e-28 131.7 297 36.4
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 1.5e-28 131.3 288 37.5
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 2.6e-28 130.6 279 38.7
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 4.4e-28 129.8 297 39.1
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 9.7e-28 128.6 299 39.1
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 1.3e-27 128.3 283 38.9
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 2.2e-27 127.5 291 37.5
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 2.8e-27 127.1 299 39.8
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 4.8e-27 126.3 302 39.4
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 8.3e-27 125.6 291 40.5
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 1.8e-26 124.4 285 41.4
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 5.3e-26 122.9 299 39.1
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 1.6e-25 121.3 294 36.7
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.6e-25 121.3 316 40.8
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 1.3e-24 118.2 294 36.1
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 1.7e-24 117.9 292 34.9
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 3.2e-23 113.6 299 37.1
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 2.7e-22 110.5 288 38.9
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 2.7e-22 110.5 258 39.5
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 7.5e-20 102.4 296 36.1
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 2.8e-19 100.5 291 36.1
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 2.8e-19 100.5 292 34.6
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 1.1e-18 98.6 288 34.0
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 1.6e-17 94.7 297 33.0
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 2.0e-17 94.4 288 36.5
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 7.7e-17 92.4 296 36.5
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 2.9e-16 90.5 292 36.3
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 3.8e-16 90.1 283 36.7
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 6.6e-16 89.4 271 35.4
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 1.1e-15 88.6 295 36.6
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 1.9e-15 87.8 296 36.1
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 3.3e-15 87.0 290 32.8
MELO3C022390.2 Cucumis melo HOM05D007706 ORTHO05D009593 1.6e-14 84.7 288 35.1
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 2.8e-14 84.0 313 32.6
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 8.0e-14 82.4 296 35.1
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 8.0e-14 82.4 312 30.4
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 1.4e-13 81.6 286 35.7
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 6.8e-13 79.3 176 36.9
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 1.2e-12 78.6 272 32.4
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 4.4e-12 76.6 283 33.6
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.7e-11 74.7 278 32.0
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 2.2e-11 74.3 288 32.6
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 3.7e-11 73.6 322 33.9
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 3.7e-11 73.6 237 35.9
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 4.9e-11 73.2 272 30.5
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 4.9e-11 73.2 174 34.5
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 4.9e-11 73.2 293 31.4
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.6e-09 68.2 96 42.7
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 3.5e-09 67.0 288 31.2
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 4.5e-09 66.6 296 30.1
COL.COLO4_10568 Corchorus olitorius HOM05D007706 ORTHO05D009593 4.5e-09 66.6 46 69.6
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.0e-08 65.5 117 38.5
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 1.0e-08 65.5 289 30.4
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 1.3e-08 65.1 296 30.7
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 1.1e-07 62.0 310 25.5
Os03g0140700 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 1.9e-07 61.2 290 28.6
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 3.3e-07 60.5 108 37.0
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 1.2e-06 58.5 209 29.7
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 1.2e-06 58.5 43 65.1
ClCG06G001430 Citrullus lanatus HOM05D007706 ORTHO05D009593 1.6e-06 58.2 289 29.1
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.6e-06 57.0 82 39.0
Actinidia30127 Actinidia chinensis HOM05D007706 ORTHO05D009593 4.7e-06 56.6 62 53.2
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 4.7e-06 56.6 112 37.5
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 4.7e-06 56.6 82 43.9
Sed0022884 Sechium edule HOM05D007706 ORTHO05D009593 6.1e-06 56.2 216 32.9


User provided reference genes

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