Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 8.9e-102 373.6 191 100.0
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 1.2e-85 320.1 192 87.0
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 2.4e-83 312.4 191 84.8
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 1.3e-71 273.5 199 74.9
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 8.1e-71 270.8 192 72.4
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 8.1e-71 270.8 193 73.6
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 2.6e-69 265.8 194 70.1
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 2.9e-68 262.3 193 72.0
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 1.4e-67 260.0 191 69.6
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 2.4e-67 259.2 192 68.8
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 3.2e-67 258.8 185 70.8
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 4.2e-67 258.5 193 71.5
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 4.2e-67 258.5 193 68.9
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 5.4e-67 258.1 192 68.2
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 9.3e-67 257.3 193 68.9
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 2.1e-66 256.1 193 67.9
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 3.5e-66 255.4 192 67.7
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 4.6e-66 255.0 192 68.8
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 7.9e-66 254.2 199 70.4
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 3.0e-65 252.3 186 71.0
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 5.1e-65 251.5 193 68.9
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 1.1e-64 250.4 172 72.1
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 1.1e-64 250.4 187 70.1
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 4.3e-64 248.4 191 67.5
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 9.6e-64 247.3 195 68.2
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 1.3e-63 246.9 184 66.8
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 1.6e-63 246.5 186 69.9
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 3.6e-63 245.4 193 68.4
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 1.4e-62 243.4 191 67.5
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 2.4e-62 242.7 178 69.7
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 2.4e-62 242.7 186 67.7
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 3.1e-62 242.3 186 65.1
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 4.0e-62 241.9 186 65.6
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 5.3e-62 241.5 192 67.7
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 6.9e-62 241.1 191 64.9
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.5e-61 240.0 178 69.1
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 2.6e-61 239.2 185 67.6
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 3.4e-61 238.8 191 68.1
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 5.8e-61 238.0 183 67.2
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 9.9e-61 237.3 184 67.4
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 1.3e-60 236.9 187 65.8
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 1.7e-60 236.5 192 65.6
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 1.7e-60 236.5 187 65.8
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 2.2e-60 236.1 187 66.8
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 6.4e-60 234.6 196 64.8
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 1.9e-59 233.0 186 63.4
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 5.5e-59 231.5 191 64.9
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.6e-58 229.9 163 71.2
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.0e-57 227.3 187 63.6
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 1.3e-57 226.9 193 62.2
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 3.0e-57 225.7 194 61.3
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 3.9e-57 225.3 191 61.3
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 5.1e-57 224.9 190 62.6
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 5.1e-57 224.9 193 61.7
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 6.7e-57 224.6 166 67.5
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 6.7e-57 224.6 190 61.6
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 8.7e-57 224.2 186 63.4
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 8.7e-57 224.2 297 47.5
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 8.7e-57 224.2 164 66.5
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 1.1e-56 223.8 193 61.1
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 1.5e-56 223.4 178 65.2
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 3.3e-56 222.2 194 62.9
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 4.3e-56 221.9 154 70.8
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 7.4e-56 221.1 191 60.2
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 2.1e-55 219.5 190 61.1
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 4.8e-55 218.4 184 60.3
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 4.8e-55 218.4 194 61.9
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 8.1e-55 217.6 193 61.7
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 1.1e-54 217.2 192 62.0
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 1.8e-54 216.5 194 62.4
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 2.4e-54 216.1 192 60.9
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 4.0e-54 215.3 194 58.2
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 5.3e-54 214.9 192 61.5
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 5.3e-54 214.9 192 59.4
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 9.0e-54 214.2 191 60.7
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 1.2e-53 213.8 159 66.0
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 2.0e-53 213.0 169 62.7
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 3.4e-53 212.2 173 65.9
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 5.8e-53 211.5 187 61.0
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 5.8e-53 211.5 187 61.0
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 5.8e-53 211.5 187 61.0
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 5.8e-53 211.5 192 60.9
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 1.0e-52 210.7 194 57.2
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 2.9e-52 209.1 191 60.7
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 1.1e-51 207.2 152 64.5
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 1.4e-51 206.8 174 63.8
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 1.4e-51 206.8 171 64.9
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 4.2e-51 205.3 167 61.1
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 7.1e-51 204.5 172 62.2
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 1.8e-49 199.9 181 56.9
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.5e-48 196.8 194 55.7
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 4.1e-46 188.7 199 52.3
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 9.0e-46 187.6 198 53.0
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 1.9e-43 179.9 170 50.6
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 7.2e-43 177.9 128 73.4
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 7.9e-42 174.5 182 48.4
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 1.8e-41 173.3 128 75.8
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.9e-40 169.9 188 53.7
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 6.9e-38 161.4 110 73.6
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 2.2e-36 156.4 159 49.1
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 1.1e-35 154.1 108 75.0
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 3.6e-34 149.1 123 54.5
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 3.0e-33 146.0 121 56.2
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 5.1e-33 145.2 142 48.6
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 3.4e-29 132.5 122 56.6
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 7.7e-29 131.3 117 55.6
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 6.1e-26 121.7 126 50.8
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 2.8e-23 112.8 80 65.0
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 3.1e-22 109.4 102 49.0
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 5.5e-19 98.6 131 42.0
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 5.2e-17 92.0 131 42.0
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 1.7e-12 77.0 65 70.8
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 5.0e-12 75.5 133 32.3
EL10As2g23173 Beta vulgaris HOM05D007042 ORTHO05D008441 5.5e-11 72.0 73 47.9
MCO16G209 Micromonas commoda HOM05D007042 ORTHO05D008441 5.2e-09 65.5 186 28.5


User provided reference genes

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