Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G213900 Prunus persica HOM05D000229 ORTHO05D000182 9.0e-37 156.4 77 100.0
Prupe.2G276300 Prunus persica HOM05D000229 ORTHO05D000182 1.3e-14 82.8 50 80.0
CiPaw.04G059300 Carya illinoinensis HOM05D000229 ORTHO05D000182 2.2e-14 82.0 50 78.0
Oeu022473.1 Olea europaea HOM05D000229 ORTHO05D000182 2.8e-14 81.6 64 64.1
vmacro06813 Vaccinium macrocarpon HOM05D000229 ORTHO05D000182 2.8e-14 81.6 50 80.0
MD07G1252700 Malus domestica HOM05D000229 ORTHO05D000182 4.8e-14 80.9 50 80.0
QL09p005415 Quercus lobata HOM05D000229 ORTHO05D000182 8.2e-14 80.1 50 76.0
CiPaw.03G092500 Carya illinoinensis HOM05D000229 ORTHO05D000182 2.4e-13 78.6 50 76.0
Ciclev10005463m.g Citrus clementina HOM05D000229 ORTHO05D000182 3.1e-13 78.2 50 72.0
CANSAT56G2434 Cannabis sativa HOM05D000229 ORTHO05D000182 4.1e-13 77.8 50 74.0
Dinv16842 Davidia involucrata HOM05D000229 ORTHO05D000182 4.1e-13 77.8 50 76.0
Atru.chr1.759 Acer truncatum HOM05D000229 ORTHO05D000182 5.3e-13 77.4 50 76.0
Potri.001G125400 Populus trichocarpa HOM05D000229 ORTHO05D000182 5.3e-13 77.4 50 74.0
RcHm_v2.0_Chr1g0374161 Rosa chinensis HOM05D000229 ORTHO05D000182 5.3e-13 77.4 50 76.0
Dinv06567 Davidia involucrata HOM05D000229 ORTHO05D000182 6.9e-13 77.0 50 76.0
FvH4_7g27320 Fragaria vesca HOM05D000229 ORTHO05D000182 1.2e-12 76.3 50 76.0
FAN06G2303 Fragaria x ananassa HOM05D000229 ORTHO05D000182 1.2e-12 76.3 50 76.0
Sabra01G0096500 Salix brachista HOM05D000229 ORTHO05D000182 1.2e-12 76.3 50 68.0
Glyma.12G006800 Glycine max HOM05D000229 ORTHO05D000182 1.5e-12 75.9 50 72.0
GSVIVG01014048001 Vitis vinifera HOM05D000229 ORTHO05D000182 1.5e-12 75.9 50 70.0
CSS0045689 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 2.0e-12 75.5 50 72.0
Cc02_g04360 Coffea canephora HOM05D000229 ORTHO05D000182 2.6e-12 75.1 50 72.0
Hma1.2p1_0432F.1_g151840 Hydrangea macrophylla HOM05D000229 ORTHO05D000182 2.6e-12 75.1 50 74.0
VMungo1127G2160 Vigna mungo HOM05D000229 ORTHO05D000182 2.6e-12 75.1 50 72.0
arahy.Tifrunner.gnm1.ann1.6W49KF Arachis hypogaea HOM05D000229 ORTHO05D000182 3.4e-12 74.7 50 70.0
FAN03G1108 Fragaria x ananassa HOM05D000229 ORTHO05D000182 3.4e-12 74.7 50 74.0
FAN03G1512 Fragaria x ananassa HOM05D000229 ORTHO05D000182 3.4e-12 74.7 50 74.0
FAN10G2574 Fragaria x ananassa HOM05D000229 ORTHO05D000182 3.4e-12 74.7 50 74.0
FAN10G2752 Fragaria x ananassa HOM05D000229 ORTHO05D000182 3.4e-12 74.7 50 74.0
Lj3g0005558 Lotus japonicus HOM05D000229 ORTHO05D000182 4.5e-12 74.3 50 72.0
Lalb_Chr01g0022431 Lupinus albus HOM05D000229 ORTHO05D000182 4.5e-12 74.3 50 72.0
Medtr4g036845 Medicago truncatula HOM05D000229 ORTHO05D000182 4.5e-12 74.3 50 70.0
RcHm_v2.0_Chr1g0374851 Rosa chinensis HOM05D000229 ORTHO05D000182 4.5e-12 74.3 48 75.0
Glyma.09G229500 Glycine max HOM05D000229 ORTHO05D000182 5.9e-12 73.9 50 70.0
Phvul.011G007600 Phaseolus vulgaris HOM05D000229 ORTHO05D000182 5.9e-12 73.9 50 70.0
Peaxi162Scf00241g00024 Petunia axillaris HOM05D000229 ORTHO05D000182 1.0e-11 73.2 50 70.0
arahy.Tifrunner.gnm1.ann1.P7LS6G Arachis hypogaea HOM05D000229 ORTHO05D000182 1.3e-11 72.8 50 68.0
Manes.06G133900 Manihot esculenta HOM05D000229 ORTHO05D000182 1.7e-11 72.4 50 70.0
Manes.06G134000 Manihot esculenta HOM05D000229 ORTHO05D000182 1.7e-11 72.4 50 72.0
AUR62002210 Chenopodium quinoa HOM05D000229 ORTHO05D000182 2.2e-11 72.0 50 72.0
Nn1g00978 Nelumbo nucifera HOM05D000229 ORTHO05D000182 2.2e-11 72.0 50 70.0
Cfa008154 Carpinus fangiana HOM05D000229 ORTHO05D000182 2.9e-11 71.6 50 72.0
Psat7g159600 Pisum sativum HOM05D000229 ORTHO05D000182 2.9e-11 71.6 50 68.0
TAR375G0843 Trochodendron aralioides HOM05D000229 ORTHO05D000182 2.9e-11 71.6 50 68.0
EL10Ac3g05851 Beta vulgaris HOM05D000229 ORTHO05D000182 3.8e-11 71.2 50 70.0
AUR62015489 Chenopodium quinoa HOM05D000229 ORTHO05D000182 3.8e-11 71.2 50 70.0
Haze_13891 Corylus avellana HOM05D000229 ORTHO05D000182 5.0e-11 70.9 50 70.0
Eucgr.A02898 Eucalyptus grandis HOM05D000229 ORTHO05D000182 5.0e-11 70.9 50 66.0
CSS0023192 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 6.5e-11 70.5 65 56.9
CAN.G48.36 Capsicum annuum HOM05D000229 ORTHO05D000182 6.5e-11 70.5 50 70.0
COL.COLO4_14106 Corchorus olitorius HOM05D000229 ORTHO05D000182 8.5e-11 70.1 50 66.0
Rhsim03G0166200 Rhododendron simsii HOM05D000229 ORTHO05D000182 8.5e-11 70.1 51 68.6
TPR.G3677 Trifolium pratense HOM05D000229 ORTHO05D000182 8.5e-11 70.1 50 68.0
Ca_25530_v3 Cicer arietinum L. HOM05D000229 ORTHO05D000182 1.1e-10 69.7 50 68.0
Actinidia13580 Actinidia chinensis HOM05D000229 ORTHO05D000182 1.4e-10 69.3 50 66.0
Actinidia24998 Actinidia chinensis HOM05D000229 ORTHO05D000182 1.4e-10 69.3 50 66.0
Aqoxy7G00774 Aquilegia oxysepala HOM05D000229 ORTHO05D000182 1.9e-10 68.9 50 68.0
Duzib205G0617 Durio zibethinus HOM05D000229 ORTHO05D000182 1.9e-10 68.9 50 66.0
TWI14G0996 Tripterygium wilfordii HOM05D000229 ORTHO05D000182 1.9e-10 68.9 50 66.0
Nitab4.5_0002816g0100 Nicotiana tabacum HOM05D000229 ORTHO05D000182 2.5e-10 68.6 50 66.0
Sc19g0002060 Simmondsia chinensis HOM05D000229 ORTHO05D000182 2.5e-10 68.6 50 66.0
Solyc03g093270.3 Solanum lycopersicum HOM05D000229 ORTHO05D000182 2.5e-10 68.6 50 70.0
Sopen03g024060 Solanum pennellii HOM05D000229 ORTHO05D000182 2.5e-10 68.6 50 70.0
PGSC0003DMG400014822 Solanum tuberosum HOM05D000229 ORTHO05D000182 2.5e-10 68.6 50 70.0
Nitab4.5_0002816g0070 Nicotiana tabacum HOM05D000229 ORTHO05D000182 3.2e-10 68.2 50 64.0
Oeu042555.1 Olea europaea HOM05D000229 ORTHO05D000182 3.2e-10 68.2 64 56.2
Ah.07g207730 Amaranthus hybridus HOM05D000229 ORTHO05D000182 4.2e-10 67.8 50 68.0
CAN.G48.35 Capsicum annuum HOM05D000229 ORTHO05D000182 4.2e-10 67.8 50 68.0
SalBow6G5779 Salvia bowleyana HOM05D000229 ORTHO05D000182 4.2e-10 67.8 50 62.0
Thecc.03G154000 Theobroma cacao HOM05D000229 ORTHO05D000182 4.2e-10 67.8 50 64.0
Aa31LG11G1210 Aethionema arabicum HOM05D000229 ORTHO05D000182 5.5e-10 67.4 47 72.3
BcaC03g18147 Brassica carinata HOM05D000229 ORTHO05D000182 5.5e-10 67.4 50 66.0
BolC2t12274H Brassica oleracea HOM05D000229 ORTHO05D000182 5.5e-10 67.4 50 66.0
Carub.0008s2310 Capsella rubella HOM05D000229 ORTHO05D000182 5.5e-10 67.4 50 68.0
Sopen03g024070 Solanum pennellii HOM05D000229 ORTHO05D000182 5.5e-10 67.4 50 68.0
PGSC0003DMG400041306 Solanum tuberosum HOM05D000229 ORTHO05D000182 5.5e-10 67.4 50 68.0
Nn6g33940 Nelumbo nucifera HOM05D000229 ORTHO05D000182 7.2e-10 67.0 50 66.0
Solyc03g093280.3 Solanum lycopersicum HOM05D000229 ORTHO05D000182 7.2e-10 67.0 50 66.0
Solyc03g093290.2 Solanum lycopersicum HOM05D000229 ORTHO05D000182 7.2e-10 67.0 50 66.0
AL8G39300 Arabidopsis lyrata HOM05D000229 ORTHO05D000182 9.4e-10 66.6 50 66.0
AT5G62420 Arabidopsis thaliana HOM05D000229 ORTHO05D000182 9.4e-10 66.6 50 66.0
DCAR_020184 Daucus carota HOM05D000229 ORTHO05D000182 9.4e-10 66.6 48 70.8
BcaC01g02467 Brassica carinata HOM05D000229 ORTHO05D000182 1.2e-09 66.2 50 66.0
A06p29120 Brassica napus HOM05D000229 ORTHO05D000182 1.2e-09 66.2 50 66.0
C03p64470 Brassica napus HOM05D000229 ORTHO05D000182 1.2e-09 66.2 50 66.0
BolC3t18702H Brassica oleracea HOM05D000229 ORTHO05D000182 1.2e-09 66.2 50 66.0
BraA06t25860Z Brassica rapa HOM05D000229 ORTHO05D000182 1.2e-09 66.2 50 66.0
Thhalv10004621m.g Eutrema salsugineum HOM05D000229 ORTHO05D000182 1.2e-09 66.2 50 66.0
BcaB02g09644 Brassica carinata HOM05D000229 ORTHO05D000182 1.6e-09 65.9 50 66.0
A02p42290 Brassica napus HOM05D000229 ORTHO05D000182 1.6e-09 65.9 50 66.0
BraA02t09158Z Brassica rapa HOM05D000229 ORTHO05D000182 1.6e-09 65.9 50 66.0
Migut.F00483 Erythranthe guttata HOM05D000229 ORTHO05D000182 1.6e-09 65.9 50 62.0
ATR0317G010 Amborella trichopoda HOM05D000229 ORTHO05D000182 2.1e-09 65.5 50 62.0
Gohir.D03G106800 Gossypium hirsutum HOM05D000229 ORTHO05D000182 2.7e-09 65.1 50 62.0
Gorai.003G113200 Gossypium raimondii HOM05D000229 ORTHO05D000182 2.7e-09 65.1 50 62.0
SEGI_05977 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 2.7e-09 65.1 50 62.0
BcaB07g29833 Brassica carinata HOM05D000229 ORTHO05D000182 3.6e-09 64.7 50 64.0
CARHR276210 Cardamine hirsuta HOM05D000229 ORTHO05D000182 3.6e-09 64.7 50 66.0
Sp2g25600 Schrenkiella parvula HOM05D000229 ORTHO05D000182 3.6e-09 64.7 50 66.0
SGA_v2.0_scaffold2G01217 Striga asiatica HOM05D000229 ORTHO05D000182 3.6e-09 64.7 50 62.0
C02p62150 Brassica napus HOM05D000229 ORTHO05D000182 4.6e-09 64.3 50 64.0
SalBow6G6874 Salvia bowleyana HOM05D000229 ORTHO05D000182 6.1e-09 63.9 45 68.9
PGSC0003DMG400039522 Solanum tuberosum HOM05D000229 ORTHO05D000182 7.9e-09 63.5 50 66.0
FAN06G3514 Fragaria x ananassa HOM05D000229 ORTHO05D000182 1.0e-08 63.2 62 58.1
FAN01G1358 Fragaria x ananassa HOM05D000229 ORTHO05D000182 1.8e-08 62.4 60 56.7
Gohir.A03G059266 Gossypium hirsutum HOM05D000229 ORTHO05D000182 1.8e-08 62.4 50 60.0
ClCG07G016800 Citrullus lanatus HOM05D000229 ORTHO05D000182 5.1e-08 60.8 50 54.0
PGR042G1397 Punica granatum HOM05D000229 ORTHO05D000182 5.1e-08 60.8 52 59.6
Nn5g28098 Nelumbo nucifera HOM05D000229 ORTHO05D000182 1.5e-07 59.3 44 65.9
SEGI_00736 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 1.5e-07 59.3 50 56.0
SEGI_02825 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 2.0e-07 58.9 50 56.0
SEGI_23411 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 2.6e-07 58.5 50 54.0
SEGI_31906 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 2.6e-07 58.5 50 54.0
MELO3C017668.2 Cucumis melo HOM05D000229 ORTHO05D000182 4.4e-07 57.8 51 56.9
CsaV3_4G003990 Cucumis sativus L. HOM05D000229 ORTHO05D000182 4.4e-07 57.8 51 56.9
Lj6g0008254 Lotus japonicus HOM05D000229 ORTHO05D000182 4.4e-07 57.8 51 62.7
CsaV3_1G007520 Cucumis sativus L. HOM05D000229 ORTHO05D000182 7.4e-07 57.0 50 52.0
Sed0003248 Sechium edule HOM05D000229 ORTHO05D000182 7.4e-07 57.0 50 52.0
SEGI_03662 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 1.3e-06 56.2 49 55.1
SEGI_06432 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 1.3e-06 56.2 50 54.0
CsaV3_7G000450 Cucumis sativus L. HOM05D000229 ORTHO05D005155 1.7e-06 55.8 50 54.0
Lj5g0018251 Lotus japonicus HOM05D000229 ORTHO05D000182 1.7e-06 55.8 51 60.8
Lj6g0001033 Lotus japonicus HOM05D000229 ORTHO05D000182 1.7e-06 55.8 51 60.8
Lj6g0011112 Lotus japonicus HOM05D000229 ORTHO05D000182 1.7e-06 55.8 51 60.8
Lj6g0020645 Lotus japonicus HOM05D000229 ORTHO05D000182 1.7e-06 55.8 51 60.8
SMO361G0542 Selaginella moellendorffii HOM05D000229 ORTHO05D000182 1.7e-06 55.8 54 50.0
arahy.Tifrunner.gnm1.ann1.QZ74IT Arachis hypogaea HOM05D000229 ORTHO05D000182 2.2e-06 55.5 51 58.8
Eucgr.B02712 Eucalyptus grandis HOM05D000229 ORTHO05D000182 2.2e-06 55.5 54 50.0
VMungo1309G2968 Vigna mungo HOM05D000229 ORTHO05D000182 2.2e-06 55.5 51 56.9
CiPaw.13G051300 Carya illinoinensis HOM05D000229 ORTHO05D000182 2.8e-06 55.1 50 58.0
CiPaw.01G258400 Carya illinoinensis HOM05D000229 ORTHO05D000182 3.7e-06 54.7 50 58.0
CsaV3_7G000440 Cucumis sativus L. HOM05D000229 ORTHO05D005155 3.7e-06 54.7 50 54.0
Lj6g0018982 Lotus japonicus HOM05D000229 ORTHO05D000182 3.7e-06 54.7 51 58.8
QL05p048498 Quercus lobata HOM05D000229 ORTHO05D000182 3.7e-06 54.7 50 58.0
ATR0149G024 Amborella trichopoda HOM05D000229 ORTHO05D005155 4.8e-06 54.3 50 50.0
CiPaw.13G051400 Carya illinoinensis HOM05D000229 ORTHO05D000182 4.8e-06 54.3 50 58.0
AUR62016843 Chenopodium quinoa HOM05D000229 ORTHO05D005155 4.8e-06 54.3 64 42.2
arahy.Tifrunner.gnm1.ann1.LKGH4A Arachis hypogaea HOM05D000229 ORTHO05D000182 6.3e-06 53.9 51 54.9
arahy.Tifrunner.gnm1.ann1.W0G0JC Arachis hypogaea HOM05D000229 ORTHO05D001189 6.3e-06 53.9 51 54.9
MELO3C002170.2 Cucumis melo HOM05D000229 ORTHO05D000182 6.3e-06 53.9 50 50.0
SMO119G0214 Selaginella moellendorffii HOM05D000229 ORTHO05D000182 6.3e-06 53.9 50 50.0
arahy.Tifrunner.gnm1.ann1.C0YWEX Arachis hypogaea HOM05D000229 ORTHO05D000182 8.2e-06 53.5 51 56.9
CARHR112120 Cardamine hirsuta HOM05D000229 ORTHO05D005155 8.2e-06 53.5 50 54.0
AUR62010376 Chenopodium quinoa HOM05D000229 ORTHO05D005155 8.2e-06 53.5 50 50.0
COL.COLO4_16311 Corchorus olitorius HOM05D000229 ORTHO05D000182 8.2e-06 53.5 50 56.0
COL.COLO4_37878 Corchorus olitorius HOM05D000229 ORTHO05D000182 8.2e-06 53.5 50 58.0
COL.COLO4_37879 Corchorus olitorius HOM05D000229 ORTHO05D000182 8.2e-06 53.5 50 58.0
Haze_26310 Corylus avellana HOM05D000229 ORTHO05D000182 8.2e-06 53.5 67 43.3
Thecc.02G074200 Theobroma cacao HOM05D000229 ORTHO05D005155 8.2e-06 53.5 50 50.0


User provided reference genes

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