Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G209900 Prunus persica HOM05D016859 ORTHO05D010367 4.1e-289 997.3 477 100.0
MD10G1171500 Malus domestica HOM05D016859 ORTHO05D010367 1.8e-135 486.9 356 68.8
FAN27G2643 Fragaria x ananassa HOM05D016859 ORTHO05D010367 1.9e-116 423.7 647 39.4
FAN15G1208 Fragaria x ananassa HOM05D016859 ORTHO05D010367 7.9e-115 418.3 647 39.3
FAN24G1655 Fragaria x ananassa HOM05D016859 ORTHO05D010367 1.0e-114 417.9 647 38.8
FvH4_2g19950 Fragaria vesca HOM05D016859 ORTHO05D010367 5.1e-114 415.6 647 38.8
RcHm_v2.0_Chr6g0285611 Rosa chinensis HOM05D016859 ORTHO05D010367 3.5e-107 392.9 726 36.8
Ciclev10019870m.g Citrus clementina HOM05D009210 ORTHO05D010367 7.7e-54 215.7 463 33.7
QL07p009176 Quercus lobata HOM05D009210 ORTHO05D010367 1.1e-52 211.8 507 30.8
QL09p043508 Quercus lobata HOM05D009210 ORTHO05D010367 1.1e-52 211.8 507 30.8
QL09p043802 Quercus lobata HOM05D009210 ORTHO05D010367 1.2e-51 208.4 507 30.6
QL09p043653 Quercus lobata HOM05D009210 ORTHO05D010367 1.0e-50 205.3 507 30.6
Cfa002512 Carpinus fangiana HOM05D009210 ORTHO05D010367 5.2e-50 203.0 603 27.9
TWI59G1397 Tripterygium wilfordii HOM05D009210 ORTHO05D010367 4.9e-48 196.4 505 31.3
Manes.13G042500 Manihot esculenta HOM05D009210 ORTHO05D010367 7.8e-46 189.1 524 31.3
Thecc.01G245200 Theobroma cacao HOM05D009210 ORTHO05D010367 2.8e-43 180.6 453 31.8
Dinv19248 Davidia involucrata HOM05D009210 ORTHO05D010367 1.3e-40 171.8 398 33.4
CSS0048272 Camellia sinensis var. sinensis HOM05D009210 ORTHO05D010367 9.2e-39 165.6 471 31.6
Lj1A79G19 Lonicera japonica HOM05D009210 ORTHO05D010367 1.2e-38 165.2 463 30.9
Duzib211G0683 Durio zibethinus HOM05D009210 ORTHO05D010367 7.8e-38 162.5 510 30.6
QL09p043642 Quercus lobata HOM05D009210 ORTHO05D010367 4.4e-33 146.7 385 29.4
Cpa.g.sc8.212 Carica papaya HOM05D009210 ORTHO05D010367 1.9e-31 141.4 469 27.5
Haze_24738 Corylus avellana HOM05D009210 ORTHO05D010367 9.2e-31 139.0 279 33.0
COL.COLO4_08165 Corchorus olitorius HOM05D009210 ORTHO05D010367 2.7e-30 137.5 501 28.1
CANSAT01G1047 Cannabis sativa HOM05D009210 ORTHO05D010367 3.3e-28 130.6 384 29.4
Gohir.A07G202550 Gossypium hirsutum HOM05D009210 ORTHO05D010367 1.7e-24 118.2 197 38.6
Gohir.D07G208750 Gossypium hirsutum HOM05D009210 ORTHO05D010367 4.1e-23 113.6 238 35.7
Gorai.001G235700 Gossypium raimondii HOM05D009210 ORTHO05D010367 2.3e-21 107.8 163 40.5
Psat6g065120 Pisum sativum HOM05D014010 ORTHO05D010367 1.1e-18 99.0 211 33.2
Medtr1g069195 Medicago truncatula HOM05D014010 ORTHO05D010367 1.4e-18 98.6 210 34.3
Actinidia30107 Actinidia chinensis HOM05D009210 ORTHO05D010367 2.4e-18 97.8 264 29.2
Nn3g19852 Nelumbo nucifera HOM05D009210 ORTHO05D010367 2.0e-17 94.7 122 44.3
Lj5g0020428 Lotus japonicus HOM05D014010 ORTHO05D010367 5.8e-17 93.2 205 32.7
TPR.G25869 Trifolium pratense HOM05D014010 ORTHO05D010367 7.6e-17 92.8 171 33.3
Sed0006753 Sechium edule HOM05D026148 ORTHO05D010367 6.4e-16 89.7 527 22.8
Oeu052100.2 Olea europaea HOM05D013334 ORTHO05D015998 8.4e-16 89.4 458 24.9
MD10G1171600 Malus domestica HOM05D016859 ORTHO05D010367 2.4e-15 87.8 58 70.7
ClCG09G009440 Citrullus lanatus HOM05D026148 ORTHO05D010367 9.2e-15 85.9 551 22.3
Glyma.13G129600 Glycine max HOM05D014010 ORTHO05D010367 1.6e-14 85.1 197 36.0
SGA_v2.0_scaffold3G01596 Striga asiatica HOM05D009210 ORTHO05D015998 2.7e-14 84.3 508 24.2
Ca_09627_v3 Cicer arietinum L. HOM05D014010 ORTHO05D010367 7.8e-14 82.8 145 37.2
Lalb_Chr02g0152931 Lupinus albus HOM05D014010 ORTHO05D010367 1.2e-11 75.5 124 40.3
CsaV3_7G025420 Cucumis sativus L. HOM05D026148 ORTHO05D010367 4.7e-11 73.6 526 22.8
PSO764G0241 Papaver somniferum HOM05D024193 ORTHO05D010367 4.7e-11 73.6 147 34.0
Atru.chr5.1922 Acer truncatum HOM05D009210 ORTHO05D010367 4.0e-10 70.5 124 34.7
GSVIVG01028482001 Vitis vinifera HOM05D009210 ORTHO05D010367 5.2e-10 70.1 47 74.5
Phvul.007G155700 Phaseolus vulgaris HOM05D014010 ORTHO05D010367 6.9e-10 69.7 136 37.5
Atru.chr5.1921 Acer truncatum HOM05D009210 ORTHO05D010367 9.0e-10 69.3 84 46.4
PSO832G3586 Papaver somniferum HOM05D024193 ORTHO05D010367 9.0e-10 69.3 144 33.3
arahy.Tifrunner.gnm1.ann1.201IN6 Arachis hypogaea HOM05D014010 ORTHO05D010367 2.0e-09 68.2 179 35.8
PGR044G0436 Punica granatum HOM05D009210 ORTHO05D010367 4.4e-09 67.0 122 35.2
Aqoxy5G00051 Aquilegia oxysepala HOM05D024193 ORTHO05D010367 7.6e-09 66.2 237 27.8
MELO3C024146.2 Cucumis melo HOM05D026148 ORTHO05D010367 9.9e-09 65.9 515 21.9
QL09p043548 Quercus lobata HOM05D002769 ORTHO05D010367 3.8e-08 63.9 277 26.0
DCAR_000542 Daucus carota HOM05D009210 ORTHO05D010367 6.4e-08 63.2 90 41.1
ECA236G3347 Erigeron canadensis HOM05D040207 ORTHO05D010367 1.4e-07 62.0 93 36.6
Duzib133G1530 Durio zibethinus HOM05D009210 ORTHO05D010367 2.4e-07 61.2 199 29.1
MSTRG.17532 Avicennia marina HOM05D013334 ORTHO05D015998 3.2e-07 60.8 211 27.0
SalBow6G1944 Salvia bowleyana HOM05D013334 ORTHO05D010367 7.1e-07 59.7 120 34.2
Hund18342 Selenicereus undatus HOM05D017699 ORTHO05D019543 9.3e-07 59.3 111 36.9


User provided reference genes

Program Settings