Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 0.0e+00 1216.4 608 100.0
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 3.9e-284 981.1 608 80.8
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 5.6e-267 924.1 611 77.6
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 9.6e-243 843.6 615 71.4
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 1.4e-225 786.6 606 66.8
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 3.2e-222 775.4 607 65.7
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 5.2e-220 768.1 603 65.8
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 2.2e-218 762.7 604 64.6
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 2.5e-214 749.2 623 61.3
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 1.2e-211 740.3 610 62.6
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 1.0e-207 727.2 602 62.3
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 2.9e-207 725.7 603 62.7
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 8.5e-207 724.2 606 63.7
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 6.1e-205 718.0 606 62.4
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 1.7e-202 709.9 602 61.1
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 2.2e-202 709.5 606 61.7
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 2.8e-202 709.1 605 61.0
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 3.7e-202 708.8 605 61.3
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 8.3e-202 707.6 603 61.7
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 9.1e-201 704.1 615 59.2
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 9.1e-201 704.1 605 60.3
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 2.9e-199 699.1 626 62.3
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 4.4e-195 685.3 522 67.8
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 4.4e-195 685.3 579 61.7
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 3.7e-194 682.2 685 56.1
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 1.6e-192 676.8 604 59.6
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 2.7e-192 676.0 603 59.5
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 1.3e-191 673.7 571 62.0
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 1.9e-190 669.8 609 58.0
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 7.3e-190 667.9 609 58.5
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 2.1e-189 666.4 609 58.3
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 4.7e-189 665.2 606 59.1
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 3.5e-184 649.0 608 57.2
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 5.2e-180 635.2 630 54.4
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 2.0e-179 633.3 609 55.8
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 1.3e-178 630.6 655 53.1
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 1.7e-178 630.2 622 55.6
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 1.7e-178 630.2 615 56.1
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 2.9e-178 629.4 630 54.3
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 6.4e-178 628.2 630 54.1
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 1.1e-177 627.5 605 54.9
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 2.1e-173 613.2 626 52.9
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 1.1e-172 610.9 625 52.0
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 3.4e-171 605.9 629 52.6
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 3.7e-170 602.4 618 52.8
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 1.4e-169 600.5 605 52.9
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 1.4e-169 600.5 605 52.9
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 2.4e-169 599.7 605 52.9
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 2.1e-168 596.7 481 65.7
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 2.7e-168 596.3 621 53.1
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 3.5e-168 595.9 627 52.2
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 1.7e-167 593.6 644 50.8
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 2.3e-167 593.2 627 51.8
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 3.0e-167 592.8 608 51.6
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 6.6e-167 591.7 609 52.1
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 1.5e-166 590.5 607 52.4
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 5.6e-166 588.6 622 51.0
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 2.8e-165 586.3 608 52.0
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 2.8e-165 586.3 605 50.6
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 4.0e-164 582.4 609 52.5
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 2.6e-163 579.7 642 50.0
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 2.6e-163 579.7 623 50.2
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 3.4e-163 579.3 639 50.9
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 7.6e-163 578.2 627 50.1
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 1.7e-162 577.0 610 51.6
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 2.2e-162 576.6 621 50.9
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 1.4e-161 573.9 607 50.7
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 4.6e-160 568.9 635 49.8
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 1.5e-158 563.9 624 50.8
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 1.5e-158 563.9 711 46.7
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 1.5e-158 563.9 625 49.9
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 1.2e-157 560.8 617 49.4
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 3.2e-153 546.2 394 73.1
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 7.3e-150 535.0 618 48.7
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 3.7e-141 506.1 612 46.6
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 1.2e-136 491.1 484 55.4
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 1.4e-129 467.6 475 51.6
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 1.9e-129 467.2 394 61.4
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 2.1e-128 463.8 484 52.9
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 1.1e-121 441.4 655 42.3
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 2.6e-115 420.2 365 57.8
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 7.2e-105 385.6 408 52.0
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 9.4e-105 385.2 349 57.3
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 1.4e-103 381.3 316 63.3
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 3.7e-101 373.2 318 61.9
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 3.6e-96 356.7 277 62.5
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 4.8e-93 346.3 332 56.9
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 5.3e-92 342.8 277 64.3
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 4.4e-70 270.0 276 52.9
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 4.3e-65 253.4 224 60.3
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 9.8e-62 242.3 230 55.2
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 1.1e-60 238.8 224 54.5
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 7.0e-60 236.1 334 41.9
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 1.2e-59 235.3 672 28.7
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 1.2e-54 218.8 415 34.9
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 3.2e-52 210.7 275 46.9
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 3.5e-51 207.2 626 29.1
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 1.7e-45 188.3 266 43.6
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 8.7e-42 176.0 354 33.3
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 3.5e-35 154.1 150 55.3
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 4.3e-33 147.1 168 53.0
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 9.0e-31 139.4 150 50.0
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 2.6e-30 137.9 117 55.6
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 2.6e-30 137.9 114 56.1
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 7.6e-30 136.3 158 43.7
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 7.6e-30 136.3 238 39.9
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 6.4e-29 133.3 154 47.4
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 2.1e-27 128.3 586 26.1
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 1.8e-26 125.2 146 48.6
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 3.0e-26 124.4 131 45.8
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 6.7e-26 123.2 128 46.1
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 1.9e-25 121.7 360 29.2
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 1.4e-23 115.5 122 53.3
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 1.4e-23 115.5 122 51.6
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 1.8e-23 115.2 354 28.2
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 1.2e-19 102.4 101 48.5
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 8.2e-16 89.7 196 32.1
RcHm_v2.0_Chr3g0485191 Rosa chinensis HOM05D006061 ORTHO05D007450 1.1e-15 89.4 55 72.7
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 1.8e-15 88.6 113 43.4
RcHm_v2.0_Chr6g0254781 Rosa chinensis HOM05D006061 ORTHO05D007450 4.0e-15 87.4 54 72.2
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 1.1e-12 79.3 92 45.7
SHI26848 Sapria himalayana HOM05D006061 ORTHO05D007450 7.1e-12 76.6 74 56.8
RcHm_v2.0_Chr7g0210011 Rosa chinensis HOM05D006061 ORTHO05D007450 5.1e-10 70.5 43 72.1
PSO541G3330 Papaver somniferum HOM05D006061 ORTHO05D007450 6.3e-08 63.5 116 35.3


User provided reference genes

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