Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G208700 Prunus persica HOM05D000256 ORTHO05D000119 4.6e-78 294.3 129 100.0
MD10G1170300 Malus domestica HOM05D000256 ORTHO05D000119 9.1e-50 200.3 135 67.4
MD05G1181600 Malus domestica HOM05D000256 ORTHO05D000119 1.4e-18 96.7 110 40.9
Manes.03G171700 Manihot esculenta HOM05D000256 ORTHO05D000119 5.4e-18 94.7 110 40.9
Prupe.8G208100 Prunus persica HOM05D000256 ORTHO05D000119 1.9e-15 86.3 118 35.6
Manes.09G050200 Manihot esculenta HOM05D000256 ORTHO05D000119 1.2e-14 83.6 112 36.6
EL10Ac7g17899 Beta vulgaris HOM05D000256 ORTHO05D000119 1.6e-14 83.2 112 38.4
Gorai.004G224300 Gossypium raimondii HOM05D000256 ORTHO05D000119 1.1e-13 80.5 111 37.8
Gohir.A11G198542 Gossypium hirsutum HOM05D000256 ORTHO05D000119 1.8e-13 79.7 112 35.7
Gohir.D08G211350 Gossypium hirsutum HOM05D000256 ORTHO05D000119 5.2e-13 78.2 111 36.9
Manes.03G171600 Manihot esculenta HOM05D000256 ORTHO05D000119 5.2e-13 78.2 113 35.4
Glyma.13G129200 Glycine max HOM05D000256 ORTHO05D000119 6.8e-13 77.8 118 33.1
Gorai.007G244400 Gossypium raimondii HOM05D000256 ORTHO05D000119 8.9e-13 77.4 112 34.8
Thecc.01G232100 Theobroma cacao HOM05D000256 ORTHO05D000119 1.2e-12 77.0 111 31.5
Nn1g08719 Nelumbo nucifera HOM05D000256 ORTHO05D000119 7.5e-12 74.3 114 34.2
Medtr1g069250 Medicago truncatula HOM05D000256 ORTHO05D000119 1.7e-11 73.2 119 30.3
Potri.002G252500 Populus trichocarpa HOM05D000256 ORTHO05D000119 1.7e-11 73.2 112 33.9
Gorai.004G224600 Gossypium raimondii HOM05D000256 ORTHO05D000119 3.7e-11 72.0 118 34.7
VMungo0720G0216 Vigna mungo HOM05D000256 ORTHO05D000119 3.7e-11 72.0 118 32.2
Lalb_Chr06g0170901 Lupinus albus HOM05D000256 ORTHO05D000119 4.9e-11 71.6 117 33.3
Phvul.007G155400 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 4.9e-11 71.6 107 34.6
Ciclev10022738m.g Citrus clementina HOM05D000256 ORTHO05D000119 6.4e-11 71.2 111 30.6
PGR044G1572 Punica granatum HOM05D000256 ORTHO05D000119 6.4e-11 71.2 127 35.4
BraA03t14928Z Brassica rapa HOM05D000256 ORTHO05D000119 8.3e-11 70.9 119 31.1
Gorai.004G058200 Gossypium raimondii HOM05D000256 ORTHO05D000119 8.3e-11 70.9 119 32.8
Gohir.D08G211375 Gossypium hirsutum HOM05D000256 ORTHO05D000119 1.1e-10 70.5 112 34.8
SalBow4G2587 Salvia bowleyana HOM05D000256 ORTHO05D000119 1.1e-10 70.5 119 33.6
A03p58670 Brassica napus HOM05D000256 ORTHO05D000119 1.4e-10 70.1 119 31.1
Migut.C00426 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.4e-10 70.1 112 35.7
Gorai.004G224400 Gossypium raimondii HOM05D000256 ORTHO05D000119 1.9e-10 69.7 112 34.8
Cpa.g.sc8.196 Carica papaya HOM05D009786 ORTHO05D012348 2.4e-10 69.3 110 35.5
Prupe.8G208500 Prunus persica HOM05D000256 ORTHO05D000119 2.4e-10 69.3 133 35.3
Prupe.8G208800 Prunus persica HOM05D000256 ORTHO05D000119 2.4e-10 69.3 111 37.8
TAR365G0192 Trochodendron aralioides HOM05D000256 ORTHO05D000119 2.4e-10 69.3 114 31.6
Gohir.D05G357766 Gossypium hirsutum HOM05D000256 ORTHO05D000119 3.2e-10 68.9 116 30.2
TAR365G0089 Trochodendron aralioides HOM05D000256 ORTHO05D000119 3.2e-10 68.9 114 31.6
Cfa002535 Carpinus fangiana HOM05D000256 ORTHO05D000119 4.1e-10 68.6 115 33.9
Gohir.A08G193480 Gossypium hirsutum HOM05D000256 ORTHO05D000119 4.1e-10 68.6 111 32.4
FvH4_2g19720 Fragaria vesca HOM05D000256 ORTHO05D000119 5.4e-10 68.2 121 34.7
FAN15G1245 Fragaria x ananassa HOM05D000256 ORTHO05D000119 5.4e-10 68.2 121 34.7
FAN24G3535 Fragaria x ananassa HOM05D000256 ORTHO05D000119 5.4e-10 68.2 121 34.7
Lj5g0020940 Lotus japonicus HOM05D000256 ORTHO05D000119 5.4e-10 68.2 115 31.3
Manes.07G056900 Manihot esculenta HOM05D000256 ORTHO05D000119 5.4e-10 68.2 102 33.3
SGA_v2.0_scaffold2G01339 Striga asiatica HOM05D000256 ORTHO05D000119 5.4e-10 68.2 115 33.9
Duzib187G0570 Durio zibethinus HOM05D000256 ORTHO05D000119 7.0e-10 67.8 109 33.0
Gohir.D08G057000 Gossypium hirsutum HOM05D000256 ORTHO05D000119 7.0e-10 67.8 119 31.9
Gorai.009G390100 Gossypium raimondii HOM05D000256 ORTHO05D000119 7.0e-10 67.8 116 30.2
Sed0017779 Sechium edule HOM05D000256 ORTHO05D000119 7.0e-10 67.8 111 33.3
BcaNung00448 Brassica carinata HOM05D000256 ORTHO05D000119 9.2e-10 67.4 119 31.1
BcaNung02888 Brassica carinata HOM05D000256 ORTHO05D000119 9.2e-10 67.4 119 30.3
C07p56620 Brassica napus HOM05D000256 ORTHO05D000119 9.2e-10 67.4 119 30.3
BolC7t46141H Brassica oleracea HOM05D000256 ORTHO05D000119 9.2e-10 67.4 119 30.3
Cpa.g.sc8.195 Carica papaya HOM05D000256 ORTHO05D000119 9.2e-10 67.4 98 35.7
Duzib138G1902 Durio zibethinus HOM05D000256 ORTHO05D000119 9.2e-10 67.4 119 31.9
THA.LOC104816681 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 9.2e-10 67.4 113 36.3
MD10G1170200 Malus domestica HOM05D000256 ORTHO05D000119 1.2e-09 67.0 116 34.5
Prupe.8G208300 Prunus persica HOM05D000256 ORTHO05D000119 1.2e-09 67.0 123 30.1
Migut.C00638 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.6e-09 66.6 112 34.8
Migut.C00642 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.6e-09 66.6 112 34.8
Gohir.A08G193448 Gossypium hirsutum HOM05D000256 ORTHO05D000119 1.6e-09 66.6 111 33.3
Thecc.01G232000 Theobroma cacao HOM05D000256 ORTHO05D000119 1.6e-09 66.6 120 30.8
Nn1g08718 Nelumbo nucifera HOM05D000256 ORTHO05D000119 2.0e-09 66.2 121 29.8
Ciclev10024159m.g Citrus clementina HOM05D000256 ORTHO05D000119 2.7e-09 65.9 111 30.6
FvH4_2g19730 Fragaria vesca HOM05D000256 ORTHO05D000119 2.7e-09 65.9 121 34.7
FAN24G2576 Fragaria x ananassa HOM05D000256 ORTHO05D000119 2.7e-09 65.9 121 34.7
Gohir.A08G193416 Gossypium hirsutum HOM05D000256 ORTHO05D000119 2.7e-09 65.9 101 33.7
Gohir.D05G357520 Gossypium hirsutum HOM05D000256 ORTHO05D000119 2.7e-09 65.9 116 29.3
Gorai.009G389900 Gossypium raimondii HOM05D000256 ORTHO05D000119 2.7e-09 65.9 116 29.3
RcHm_v2.0_Chr5g0039321 Rosa chinensis HOM05D000256 ORTHO05D000119 2.7e-09 65.9 111 32.4
CiPaw.04G108000 Carya illinoinensis HOM05D000256 ORTHO05D000119 3.5e-09 65.5 112 32.1
Nn1g08743 Nelumbo nucifera HOM05D000256 ORTHO05D000119 3.5e-09 65.5 121 29.8
Haze_24742 Corylus avellana HOM05D000256 ORTHO05D000119 4.6e-09 65.1 126 31.7
Gohir.A08G193400 Gossypium hirsutum HOM05D000256 ORTHO05D000119 4.6e-09 65.1 124 29.8
Gohir.A08G193432 Gossypium hirsutum HOM05D000256 ORTHO05D000119 4.6e-09 65.1 110 30.9
Prupe.8G208200 Prunus persica HOM05D000256 ORTHO05D000119 4.6e-09 65.1 116 30.2
TAR362G1185 Trochodendron aralioides HOM05D000256 ORTHO05D000119 4.6e-09 65.1 112 32.1
EL10As7g23807 Beta vulgaris HOM05D000256 ORTHO05D000119 6.0e-09 64.7 112 32.1
Gohir.A08G193464 Gossypium hirsutum HOM05D000256 ORTHO05D000119 6.0e-09 64.7 111 32.4
Duzib187G0996 Durio zibethinus HOM05D000256 ORTHO05D000119 7.8e-09 64.3 103 32.0
FvH4_2g19700 Fragaria vesca HOM05D000256 ORTHO05D000119 7.8e-09 64.3 115 30.4
Gohir.A08G046500 Gossypium hirsutum HOM05D000256 ORTHO05D000119 7.8e-09 64.3 119 31.1
CsaV3_5G013340 Cucumis sativus L. HOM05D000256 ORTHO05D000119 1.0e-08 63.9 100 34.0
Thhalv10026872m.g Eutrema salsugineum HOM05D000256 ORTHO05D000119 1.0e-08 63.9 116 28.4
Gohir.D08G211400 Gossypium hirsutum HOM05D000256 ORTHO05D000119 1.3e-08 63.5 96 36.5
Gorai.004G224500 Gossypium raimondii HOM05D000256 ORTHO05D000119 1.3e-08 63.5 96 36.5
FAN27G2125 Fragaria x ananassa HOM05D000256 ORTHO05D000119 1.7e-08 63.2 121 32.2
Psat6g065280 Pisum sativum HOM05D000256 ORTHO05D000119 1.7e-08 63.2 120 29.2
Duzib211G0476 Durio zibethinus HOM05D000256 ORTHO05D000119 2.3e-08 62.8 112 31.2
Gorai.004G224100 Gossypium raimondii HOM05D000256 ORTHO05D000119 2.3e-08 62.8 124 29.0
RcHm_v2.0_Chr6g0285441 Rosa chinensis HOM05D000256 ORTHO05D000119 2.3e-08 62.8 122 32.0
PGSC0003DMG400014348 Solanum tuberosum HOM05D000256 ORTHO05D000119 2.3e-08 62.8 112 34.8
Sed0001966 Sechium edule HOM05D000256 ORTHO05D000119 3.0e-08 62.4 120 29.2
Prupe.8G208400 Prunus persica HOM05D000256 ORTHO05D000119 3.9e-08 62.0 123 28.5
FAN24G1258 Fragaria x ananassa HOM05D009280 ORTHO05D012103 5.0e-08 61.6 110 32.7
Ciclev10007012m.g Citrus clementina HOM05D010815 ORTHO05D011855 6.6e-08 61.2 113 33.6
Peaxi162Scf01007g00016 Petunia axillaris HOM05D000256 ORTHO05D000119 6.6e-08 61.2 103 33.0
THA.LOC104814676 Tarenaya hassleriana HOM05D000256 ORTHO05D000119 6.6e-08 61.2 116 29.3
TWI14G1030 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 6.6e-08 61.2 122 31.1
Gohir.A08G193600 Gossypium hirsutum HOM05D000256 ORTHO05D000119 8.6e-08 60.8 96 35.4
PGSC0003DMG400038419 Solanum tuberosum HOM05D000256 ORTHO05D000119 8.6e-08 60.8 94 38.3
BcaC09g51683 Brassica carinata HOM05D000256 ORTHO05D000119 1.5e-07 60.1 117 29.1
BolC1t01010H Brassica oleracea HOM05D000256 ORTHO05D000119 1.5e-07 60.1 117 29.1
AT4G29035 Arabidopsis thaliana HOM05D000256 ORTHO05D000119 2.5e-07 59.3 117 29.1
Carub.0007s1159 Capsella rubella HOM05D000256 ORTHO05D000119 2.5e-07 59.3 116 29.3
ClCG08G002620 Citrullus lanatus HOM05D012637 ORTHO05D015615 2.5e-07 59.3 112 34.8
MD13G1110700 Malus domestica HOM05D000256 ORTHO05D000119 2.5e-07 59.3 111 33.3
Oeu012978.1 Olea europaea HOM05D000256 ORTHO05D000119 2.5e-07 59.3 116 32.8
AL7G38740 Arabidopsis lyrata HOM05D000256 ORTHO05D000119 4.3e-07 58.5 116 28.4
AT5G04350 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 4.3e-07 58.5 110 31.8
BcaB01g05894 Brassica carinata HOM05D000149 ORTHO05D000076 4.3e-07 58.5 101 33.7
C03p02010 Brassica napus HOM05D003012 ORTHO05D002833 4.3e-07 58.5 101 33.7
BolC3t12754H Brassica oleracea HOM05D000149 ORTHO05D000076 4.3e-07 58.5 101 33.7
Cfa002530 Carpinus fangiana HOM05D000256 ORTHO05D000119 4.3e-07 58.5 127 26.8
Migut.C00637 Erythranthe guttata HOM05D000256 ORTHO05D000119 4.3e-07 58.5 111 33.3
Gohir.D08G211466 Gossypium hirsutum HOM05D000256 ORTHO05D000119 4.3e-07 58.5 115 30.4
Nn1g08741 Nelumbo nucifera HOM05D000256 ORTHO05D000119 4.3e-07 58.5 121 28.1
Nn1g08742 Nelumbo nucifera HOM05D000256 ORTHO05D000119 4.3e-07 58.5 121 28.1
A03p01640 Brassica napus HOM05D000149 ORTHO05D000076 5.6e-07 58.2 101 33.7
BraA03t09539Z Brassica rapa HOM05D000149 ORTHO05D000076 5.6e-07 58.2 101 33.7
ClCG07G006080 Citrullus lanatus HOM05D000256 ORTHO05D000119 5.6e-07 58.2 109 31.2
Phvul.008G063400 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 5.6e-07 58.2 114 29.8
Prupe.5G054200 Prunus persica HOM05D000256 ORTHO05D000119 5.6e-07 58.2 116 28.4
RcHm_v2.0_Chr6g0285431 Rosa chinensis HOM05D000256 ORTHO05D000119 5.6e-07 58.2 122 31.1
C04p62630 Brassica napus HOM05D003012 ORTHO05D002833 7.3e-07 57.8 111 32.4
Gorai.004G224700 Gossypium raimondii HOM05D000256 ORTHO05D000119 7.3e-07 57.8 115 29.6
Lalb_Chr05g0219511 Lupinus albus HOM05D000256 ORTHO05D000119 7.3e-07 57.8 108 30.6
BolC4t27745H Brassica oleracea HOM05D003012 ORTHO05D002833 9.5e-07 57.4 111 31.5
CsaV3_3G049910 Cucumis sativus L. HOM05D000256 ORTHO05D000119 9.5e-07 57.4 103 31.1
CsaV3_6G051250 Cucumis sativus L. HOM05D000256 ORTHO05D000119 9.5e-07 57.4 110 30.9
Migut.F01939 Erythranthe guttata HOM05D000256 ORTHO05D000119 9.5e-07 57.4 118 28.8
PSO675G3034 Papaver somniferum HOM05D000256 ORTHO05D000119 9.5e-07 57.4 56 41.1
Sp7g26980 Schrenkiella parvula HOM05D000256 ORTHO05D000119 9.5e-07 57.4 116 29.3
Sed0009184 Sechium edule HOM05D000256 ORTHO05D000119 9.5e-07 57.4 112 30.4
Sed0023202 Sechium edule HOM05D000256 ORTHO05D000119 9.5e-07 57.4 117 29.9
Aqoxy4G00684 Aquilegia oxysepala HOM05D000256 ORTHO05D000119 1.2e-06 57.0 100 34.0
RcHm_v2.0_Chr4g0396551 Rosa chinensis HOM05D005430 ORTHO05D000119 1.2e-06 57.0 114 31.6
Sopen09g005850 Solanum pennellii HOM05D000256 ORTHO05D000119 1.2e-06 57.0 116 31.0
THA.LOC104816440 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 1.2e-06 57.0 61 44.3
Carub.0003s1682 Capsella rubella HOM05D000256 ORTHO05D000119 1.6e-06 56.6 91 34.1
Carub.0006s0330 Capsella rubella HOM05D003012 ORTHO05D002833 1.6e-06 56.6 98 33.7
Potri.004G199700 Populus trichocarpa HOM05D000256 ORTHO05D000119 1.6e-06 56.6 120 32.5
PGR042G0022 Punica granatum HOM05D000256 ORTHO05D000119 1.6e-06 56.6 102 29.4
PGR042G0549 Punica granatum HOM05D000256 ORTHO05D000119 1.6e-06 56.6 102 29.4
PGR042G0996 Punica granatum HOM05D000256 ORTHO05D000119 1.6e-06 56.6 102 29.4
PGR042G1053 Punica granatum HOM05D000256 ORTHO05D000119 1.6e-06 56.6 102 29.4
PGR042G1377 Punica granatum HOM05D000256 ORTHO05D000119 1.6e-06 56.6 102 29.4
PGR042G1542 Punica granatum HOM05D000256 ORTHO05D000119 1.6e-06 56.6 102 29.4
PGR042G1949 Punica granatum HOM05D000256 ORTHO05D000119 1.6e-06 56.6 102 29.4
PGR042G2280 Punica granatum HOM05D000256 ORTHO05D000119 1.6e-06 56.6 102 29.4
PGR042G2642 Punica granatum HOM05D000256 ORTHO05D000119 1.6e-06 56.6 102 29.4
PGR042G3183 Punica granatum HOM05D000256 ORTHO05D000119 1.6e-06 56.6 102 29.4
PGR042G3343 Punica granatum HOM05D000256 ORTHO05D000119 1.6e-06 56.6 102 29.4
PGR042G3721 Punica granatum HOM05D000256 ORTHO05D000119 1.6e-06 56.6 102 29.4
A09p64370 Brassica napus HOM05D003012 ORTHO05D002833 2.1e-06 56.2 107 33.6
C04p62640 Brassica napus HOM05D003012 ORTHO05D002833 2.1e-06 56.2 111 31.5
BraA09t41781Z Brassica rapa HOM05D003012 ORTHO05D002833 2.1e-06 56.2 107 33.6
CAN.G884.6 Capsicum annuum HOM05D000256 ORTHO05D000119 2.1e-06 56.2 85 35.3
CARHR284620 Cardamine hirsuta HOM05D000256 ORTHO05D000119 2.1e-06 56.2 116 26.7
Migut.F01941 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.1e-06 56.2 114 30.7
PSO724G0195 Papaver somniferum HOM05D000256 ORTHO05D000119 2.1e-06 56.2 108 29.6
Sed0022717 Sechium edule HOM05D000256 ORTHO05D000119 2.1e-06 56.2 114 28.9
AL3G47730 Arabidopsis lyrata HOM05D000256 ORTHO05D000119 2.8e-06 55.8 115 29.6
AT4G16295 Arabidopsis thaliana HOM05D000256 ORTHO05D000119 2.8e-06 55.8 116 27.6
CsaV3_7G025620 Cucumis sativus L. HOM05D000256 ORTHO05D000119 2.8e-06 55.8 127 30.7
Migut.C00641 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.8e-06 55.8 111 32.4
Sed0000623 Sechium edule HOM05D000256 ORTHO05D000119 2.8e-06 55.8 113 30.1
PGSC0003DMG400021982 Solanum tuberosum HOM05D000256 ORTHO05D000119 2.8e-06 55.8 121 33.9
SGA_v2.0_scaffold57G20171 Striga asiatica HOM05D000256 ORTHO05D000119 2.8e-06 55.8 108 27.8
THA.LOC104816680 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 2.8e-06 55.8 113 30.1
MELO3C021061.2 Cucumis melo HOM05D000256 ORTHO05D000119 3.6e-06 55.5 115 30.4
Nitab4.5_0000401g0200 Nicotiana tabacum HOM05D000256 ORTHO05D000119 3.6e-06 55.5 117 31.6
Sp1g10390 Schrenkiella parvula HOM05D003012 ORTHO05D002833 3.6e-06 55.5 123 30.9
Sed0025080 Sechium edule HOM05D000256 ORTHO05D000119 3.6e-06 55.5 116 31.0
A04p25490 Brassica napus HOM05D003012 ORTHO05D002833 4.7e-06 55.1 111 31.5
BraA04t18052Z Brassica rapa HOM05D003012 ORTHO05D002833 4.7e-06 55.1 111 31.5
MELO3C021040.2 Cucumis melo HOM05D000256 ORTHO05D000119 4.7e-06 55.1 119 30.3
Gohir.A08G193701 Gossypium hirsutum HOM05D000256 ORTHO05D000119 4.7e-06 55.1 118 31.4
RhsimUnG0181400 Rhododendron simsii HOM05D000256 ORTHO05D000119 4.7e-06 55.1 89 33.7
RcHm_v2.0_Chr4g0396541 Rosa chinensis HOM05D000256 ORTHO05D000119 4.7e-06 55.1 121 30.6
Carub.0007s3746 Capsella rubella HOM05D003012 ORTHO05D002833 6.2e-06 54.7 125 32.0
Gohir.D05G357755 Gossypium hirsutum HOM05D000256 ORTHO05D000119 6.2e-06 54.7 116 28.4
Lsat_1_v5_gn_6_61461 Lactuca sativa HOM05D000256 ORTHO05D000119 6.2e-06 54.7 118 31.4
CsaV3_7G025640 Cucumis sativus L. HOM05D000256 ORTHO05D000119 8.1e-06 54.3 114 26.3
Thhalv10015914m.g Eutrema salsugineum HOM05D003012 ORTHO05D000119 8.1e-06 54.3 111 26.1
Oeu009572.1 Olea europaea HOM05D000256 ORTHO05D000119 8.1e-06 54.3 111 27.9


User provided reference genes

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