Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G207500 Prunus persica HOM05D007485 ORTHO05D009437 1.2e-92 343.2 183 100.0
MD10G1169600 Malus domestica HOM05D007485 ORTHO05D009437 8.3e-73 277.3 184 80.4
MD05G1180900 Malus domestica HOM05D007485 ORTHO05D009437 4.6e-71 271.6 184 79.9
RcHm_v2.0_Chr6g0285341 Rosa chinensis HOM05D007485 ORTHO05D009437 1.9e-61 239.6 184 73.9
Haze_24766 Corylus avellana HOM05D007485 ORTHO05D009437 5.6e-61 238.0 185 72.4
Cfa002536 Carpinus fangiana HOM05D001836 ORTHO05D001519 2.2e-57 226.1 186 70.4
Atru.chr5.1880 Acer truncatum HOM05D007485 ORTHO05D009437 1.2e-55 220.3 188 66.5
FvH4_2g19580 Fragaria vesca HOM05D007485 ORTHO05D009437 1.0e-54 217.2 183 66.1
FAN27G2610 Fragaria x ananassa HOM05D007485 ORTHO05D009437 5.1e-54 214.9 183 66.1
FAN24G1628 Fragaria x ananassa HOM05D007485 ORTHO05D009437 6.6e-54 214.5 183 66.1
CSS0034782 Camellia sinensis var. sinensis HOM05D007485 ORTHO05D009437 1.5e-53 213.4 183 65.0
Thecc.01G230100 Theobroma cacao HOM05D007485 ORTHO05D009437 2.5e-53 212.6 184 64.1
Gohir.A07G201700 Gossypium hirsutum HOM05D007485 ORTHO05D009437 3.3e-53 212.2 184 64.1
TWI59G0176 Tripterygium wilfordii HOM05D007485 ORTHO05D009437 1.6e-52 209.9 183 65.6
Gohir.D07G208000 Gossypium hirsutum HOM05D007485 ORTHO05D009437 2.1e-52 209.5 184 63.0
CiPaw.03G152400 Carya illinoinensis HOM05D007485 ORTHO05D009437 2.4e-51 206.1 183 63.9
Actinidia37576 Actinidia chinensis HOM05D007485 ORTHO05D009437 1.2e-50 203.8 172 68.0
Duzib133G1001 Durio zibethinus HOM05D007485 ORTHO05D009437 3.4e-50 202.2 184 62.5
FAN15G2643 Fragaria x ananassa HOM05D007485 ORTHO05D009437 7.6e-50 201.1 183 63.4
PGR083G2217 Punica granatum HOM05D007485 ORTHO05D009437 9.9e-50 200.7 187 61.5
Potri.002G251800 Populus trichocarpa HOM05D007485 ORTHO05D009437 1.7e-49 199.9 168 71.4
Gorai.001G234600 Gossypium raimondii HOM05D007485 ORTHO05D009437 3.8e-49 198.7 199 58.3
Manes.12G043200 Manihot esculenta HOM05D007485 ORTHO05D009437 2.4e-48 196.1 185 63.8
Cc01_g17350 Coffea canephora HOM05D007485 ORTHO05D009437 3.2e-48 195.7 185 63.2
MSTRG.18375 Avicennia marina HOM05D007485 ORTHO05D009437 4.6e-47 191.8 179 58.7
GSVIVG01028546001 Vitis vinifera HOM05D007485 ORTHO05D009437 7.8e-47 191.0 192 62.0
Phvul.008G122300 Phaseolus vulgaris HOM05D007485 ORTHO05D009437 1.0e-46 190.7 183 57.9
Migut.D00513 Erythranthe guttata HOM05D007485 ORTHO05D009437 1.7e-46 189.9 169 64.5
VMungo1383G3371 Vigna mungo HOM05D007485 ORTHO05D009437 1.7e-46 189.9 183 57.9
Lalb_Chr19g0125461 Lupinus albus HOM05D007485 ORTHO05D009437 5.1e-46 188.3 167 62.3
Glyma.18G175800 Glycine max HOM05D007485 ORTHO05D009437 8.7e-46 187.6 183 57.9
Glyma.08G357300 Glycine max HOM05D007485 ORTHO05D009437 1.9e-45 186.4 183 56.8
Sopen06g002830 Solanum pennellii HOM05D007485 ORTHO05D009437 2.1e-44 183.0 179 58.1
arahy.Tifrunner.gnm1.ann1.9XF3L6 Arachis hypogaea HOM05D007485 ORTHO05D009437 3.6e-44 182.2 185 58.4
CAN.G322.118 Capsicum annuum HOM05D007485 ORTHO05D009437 3.6e-44 182.2 168 60.1
Solyc06g007990.4 Solanum lycopersicum HOM05D007485 ORTHO05D009437 6.2e-44 181.4 178 56.2
Ciclev10022604m.g Citrus clementina HOM05D007485 ORTHO05D009437 1.4e-43 180.3 183 57.4
CANSAT01G1289 Cannabis sativa HOM05D007485 ORTHO05D009437 3.1e-43 179.1 189 56.6
Rhsim13G0042600 Rhododendron simsii HOM05D007485 ORTHO05D009437 3.1e-43 179.1 179 59.2
Nitab4.5_0001740g0030 Nicotiana tabacum HOM05D007485 ORTHO05D009437 4.0e-43 178.7 193 54.9
Lj1g0002217 Lotus japonicus HOM05D007485 ORTHO05D009437 9.0e-43 177.6 184 56.0
Medtr7g059255 Medicago truncatula HOM05D007485 ORTHO05D009437 1.2e-42 177.2 167 61.7
Nn1g03123 Nelumbo nucifera HOM05D007485 ORTHO05D009437 1.7e-41 173.3 154 66.9
Peaxi162Scf00499g00019 Petunia axillaris HOM05D007485 ORTHO05D009437 1.7e-41 173.3 163 62.0
SalBow6G3754 Salvia bowleyana HOM05D007485 ORTHO05D009437 3.8e-41 172.2 181 54.7
vmacro02738 Vaccinium macrocarpon HOM05D007485 ORTHO05D009437 1.9e-40 169.9 211 53.1
CsaV3_3G028690 Cucumis sativus L. HOM05D007485 ORTHO05D009437 5.4e-40 168.3 187 56.7
MELO3C012792.2 Cucumis melo HOM05D007485 ORTHO05D009437 7.1e-40 167.9 183 55.2
arahy.Tifrunner.gnm1.ann1.W4TMFE Arachis hypogaea HOM05D007485 ORTHO05D009437 2.7e-39 166.0 216 50.0
THA.LOC104808772 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 9.6e-37 157.5 178 55.6
AL9U10750 Arabidopsis lyrata HOM05D007485 ORTHO05D009437 1.3e-36 157.1 169 55.6
Lsat_1_v5_gn_9_12821 Lactuca sativa HOM05D007485 ORTHO05D009437 1.6e-36 156.8 185 53.5
Carub.0007s2945 Capsella rubella HOM05D007485 ORTHO05D009437 3.6e-36 155.6 169 56.2
QL09p044412 Quercus lobata HOM05D007485 ORTHO05D009437 3.6e-36 155.6 150 57.3
SGA_v2.0_scaffold1G00709 Striga asiatica HOM05D007485 ORTHO05D009437 3.6e-36 155.6 177 53.1
AT4G13220 Arabidopsis thaliana HOM05D007485 ORTHO05D009437 6.2e-36 154.8 169 55.0
Thhalv10026377m.g Eutrema salsugineum HOM05D007485 ORTHO05D009437 2.4e-35 152.9 178 52.8
Sp7g10710 Schrenkiella parvula HOM05D007485 ORTHO05D009437 9.0e-35 151.0 179 51.4
EL10Ac7g17803 Beta vulgaris HOM05D007485 ORTHO05D009437 1.5e-34 150.2 180 50.0
CARHR126310 Cardamine hirsuta HOM05D007485 ORTHO05D009437 3.4e-34 149.1 162 56.2
CARHR218700 Cardamine hirsuta HOM05D007485 ORTHO05D009437 1.7e-33 146.7 161 54.0
Eucgr.C02436 Eucalyptus grandis HOM05D007485 ORTHO05D009437 1.7e-33 146.7 132 63.6
A08p33350 Brassica napus HOM05D007485 ORTHO05D009437 2.9e-33 146.0 191 52.4
BcaC07g38678 Brassica carinata HOM05D007485 ORTHO05D009437 8.4e-33 144.4 193 52.3
BolC8t49113H Brassica oleracea HOM05D007485 ORTHO05D009437 8.4e-33 144.4 193 52.3
BraA08t35252Z Brassica rapa HOM05D007485 ORTHO05D009437 8.4e-33 144.4 190 52.1
BcaB03g13243 Brassica carinata HOM05D007485 ORTHO05D009437 2.4e-32 142.9 175 55.4
C08p14780 Brassica napus HOM05D007485 ORTHO05D009437 5.4e-32 141.7 194 52.1
MBI10_g09190_MAGBIO Magnolia biondii HOM05D007485 ORTHO05D009437 1.2e-31 140.6 171 53.2
Sed0027911 Sechium edule HOM05D007485 ORTHO05D009437 1.2e-31 140.6 232 43.1
PSO017G5507 Papaver somniferum HOM05D007485 ORTHO05D009437 1.6e-31 140.2 132 62.1
HPP92_025808 Vanilla planifolia HOM05D007485 ORTHO05D009437 1.6e-31 140.2 155 54.2
PGSC0003DMG400014703 Solanum tuberosum HOM05D007485 ORTHO05D009437 2.7e-31 139.4 106 68.9
AUR62008887 Chenopodium quinoa HOM05D007485 ORTHO05D009437 1.8e-30 136.7 171 50.9
COL.COLO4_36853 Corchorus olitorius HOM05D007485 ORTHO05D009437 1.8e-30 136.7 135 58.5
ECA247G1773 Erigeron canadensis HOM05D007485 ORTHO05D009437 1.8e-30 136.7 126 63.5
Aa31LG9G4570 Aethionema arabicum HOM05D007485 ORTHO05D009437 3.9e-30 135.6 154 53.9
Aqoxy2G03844 Aquilegia oxysepala HOM05D007485 ORTHO05D009437 5.1e-30 135.2 127 61.4
Sc05g0002340 Simmondsia chinensis HOM05D007485 ORTHO05D009437 6.7e-30 134.8 159 51.6
AUR62031821 Chenopodium quinoa HOM05D007485 ORTHO05D009437 8.7e-30 134.4 186 45.2
HanXRQChr15g0468381 Helianthus annuus HOM05D007485 ORTHO05D009437 1.9e-29 133.3 167 51.5
TPR.G9157 Trifolium pratense HOM05D007485 ORTHO05D009437 7.4e-29 131.3 107 65.4
Os12g0276100 Oryza sativa ssp. japonica HOM05D007485 ORTHO05D009437 1.3e-28 130.6 117 61.5
PSO063G7151 Papaver somniferum HOM05D007485 ORTHO05D009437 1.6e-28 130.2 116 66.4
unitig_0.g180 Utricularia gibba HOM05D007485 ORTHO05D009437 2.8e-28 129.4 171 50.3
CDE12G0678 Ceratophyllum demersum HOM05D007485 ORTHO05D009437 6.2e-28 128.3 129 55.0
Psat0s3317g0040 Pisum sativum HOM05D007485 ORTHO05D009437 4.2e-24 115.5 135 51.9
Zm00001eb102490 Zea mays HOM05D007485 ORTHO05D009437 1.0e-22 110.9 116 53.4
Zm00001eb317800 Zea mays HOM05D007485 ORTHO05D009437 7.4e-21 104.8 113 50.4
Hund18369 Selenicereus undatus HOM05D007485 ORTHO05D009437 1.1e-19 100.9 149 48.3
QL09p045086 Quercus lobata HOM05D007485 ORTHO05D009437 4.2e-16 89.0 73 67.1
ATR0088G060 Amborella trichopoda HOM05D007485 ORTHO05D009437 1.0e-14 84.3 58 74.1
Pp3c25_600 Physcomitrium patens HOM05D007485 ORTHO05D009437 1.5e-13 80.5 121 39.7
ClCG07G001710 Citrullus lanatus HOM05D007485 ORTHO05D009437 7.4e-13 78.2 102 51.0
Nitab4.5_0003180g0040 Nicotiana tabacum HOM05D007485 ORTHO05D009437 2.8e-12 76.3 141 37.6
HanXRQChr12g0377041 Helianthus annuus HOM05D007485 ORTHO05D009437 1.0e-09 67.8 59 64.4
THA.LOC104804650 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 2.9e-09 66.2 77 51.9
Cre16.g687200 Chlamydomonas reinhardtii HOM05D007485 ORTHO05D009437 6.1e-07 58.5 137 32.8
TPR.G23276 Trifolium pratense HOM05D000033 ORTHO05D007915 6.1e-07 58.5 68 50.0
Mapoly0101s0026 Marchantia polymorpha HOM05D007485 ORTHO05D009437 1.4e-06 57.4 56 51.8


User provided reference genes

Program Settings