Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 2.8e-160 568.5 285 100.0
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 5.2e-130 468.0 282 81.9
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 1.4e-127 459.9 283 80.9
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 1.1e-124 450.3 285 76.8
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 1.1e-124 450.3 282 79.8
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.5e-124 449.9 282 79.4
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 1.0e-122 443.7 282 75.5
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 9.8e-121 437.2 283 73.9
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 3.1e-119 432.2 279 77.1
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 4.1e-119 431.8 282 75.5
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 9.1e-119 430.6 279 75.3
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 2.7e-118 429.1 280 75.0
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.7e-118 429.1 286 74.5
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 7.7e-118 427.6 282 74.8
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 6.5e-117 424.5 282 73.8
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 8.6e-117 424.1 282 74.8
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 5.5e-116 421.4 290 71.4
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 9.5e-116 420.6 282 72.0
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 9.5e-116 420.6 282 73.0
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 1.2e-115 420.2 268 77.2
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 1.2e-115 420.2 282 72.7
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 6.1e-115 417.9 282 72.0
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 8.0e-115 417.5 282 71.6
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 1.0e-114 417.2 281 72.6
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 1.8e-114 416.4 283 72.8
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 1.8e-114 416.4 283 71.4
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 2.3e-114 416.0 282 72.3
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 4.0e-114 415.2 283 72.8
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 4.0e-114 415.2 282 73.4
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 8.9e-114 414.1 278 71.9
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 1.2e-113 413.7 286 72.0
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 1.2e-113 413.7 279 72.4
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 1.2e-113 413.7 282 70.9
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 1.2e-113 413.7 282 72.0
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 1.5e-113 413.3 283 69.3
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 2.0e-113 412.9 280 73.2
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 2.0e-113 412.9 279 72.0
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.0e-113 412.9 284 71.8
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 2.0e-113 412.9 282 70.6
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 2.0e-113 412.9 282 71.6
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 2.6e-113 412.5 279 71.0
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 3.4e-113 412.1 280 72.9
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 4.4e-113 411.8 279 72.8
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 4.4e-113 411.8 284 71.1
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 4.4e-113 411.8 282 70.9
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 1.7e-112 409.8 282 69.5
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.7e-112 409.8 284 71.1
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 2.8e-112 409.1 279 70.6
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 6.3e-112 407.9 283 69.3
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 2.4e-111 406.0 284 70.4
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 2.4e-111 406.0 284 70.4
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 4.1e-111 405.2 279 71.3
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 5.4e-111 404.8 268 71.6
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 5.4e-111 404.8 279 70.3
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 5.4e-111 404.8 292 69.2
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 7.0e-111 404.4 284 71.1
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 1.2e-110 403.7 283 70.7
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.6e-110 403.3 288 71.9
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 2.7e-110 402.5 284 70.1
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 4.5e-110 401.7 282 71.3
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 7.8e-110 401.0 279 69.9
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 1.0e-109 400.6 282 69.9
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 1.0e-109 400.6 279 69.5
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.7e-109 399.8 284 69.7
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 2.9e-109 399.1 284 68.7
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 1.5e-108 396.7 284 69.4
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 3.3e-108 395.6 285 67.4
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 5.6e-108 394.8 282 68.4
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 5.6e-108 394.8 285 67.7
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 5.6e-108 394.8 284 69.7
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 7.3e-108 394.4 285 70.5
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 9.5e-108 394.0 284 69.0
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 2.1e-107 392.9 284 69.4
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 3.6e-107 392.1 283 67.5
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 3.6e-107 392.1 284 67.6
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 4.7e-107 391.7 286 68.9
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 6.1e-107 391.3 285 67.0
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 8.0e-107 391.0 284 66.5
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 1.4e-106 390.2 268 73.1
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.8e-106 389.8 275 69.1
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 3.0e-106 389.0 282 68.1
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 4.0e-106 388.7 284 67.3
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 8.9e-106 387.5 282 66.3
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 2.0e-105 386.3 282 66.0
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 2.6e-105 386.0 279 67.7
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 4.4e-105 385.2 309 63.8
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 7.5e-105 384.4 289 66.4
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 9.8e-105 384.0 280 66.8
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 3.2e-103 379.0 278 65.5
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 6.0e-102 374.8 278 66.5
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 1.1e-98 364.0 300 63.3
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 8.9e-98 360.9 234 74.8
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 5.4e-95 351.7 238 73.5
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 1.2e-94 350.5 286 64.3
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 3.9e-93 345.5 278 65.1
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.9e-92 343.2 351 54.4
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 1.8e-90 336.7 296 58.1
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 1.5e-89 333.6 280 62.5
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 3.7e-88 328.9 285 60.0
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 6.6e-85 318.2 276 57.6
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 4.7e-83 312.0 277 56.3
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 1.8e-82 310.1 276 55.1
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.7e-80 303.5 275 54.9
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.9e-79 300.1 276 55.4
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.9e-76 290.0 197 68.5
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 8.1e-75 284.6 240 60.0
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.4e-74 283.9 248 59.3
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 1.2e-70 270.8 316 48.4
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 3.5e-70 269.2 195 66.7
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.7e-69 266.9 213 66.7
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 4.8e-67 258.8 302 49.3
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 1.8e-66 256.9 201 63.7
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 2.4e-58 229.9 152 72.4
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 6.7e-53 211.8 161 64.0
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 7.4e-52 208.4 226 49.6
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 7.6e-49 198.4 161 61.5
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.3e-44 183.0 216 53.2
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.1e-42 177.9 250 41.6
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.0e-40 171.4 213 50.2
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 2.2e-40 170.2 109 72.5
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 2.2e-35 153.7 248 40.7
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 1.5e-25 120.9 275 33.1
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 6.5e-24 115.5 70 81.4
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 5.5e-23 112.5 119 52.1
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 1.1e-20 104.8 85 60.0
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 2.6e-20 103.6 76 65.8
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 9.7e-20 101.7 109 49.5
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 2.4e-18 97.1 62 79.0
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 2.0e-17 94.0 45 95.6
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 2.6e-17 93.6 154 37.0
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 2.9e-16 90.1 84 57.1
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 3.2e-15 86.7 83 61.4
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 2.7e-14 83.6 61 68.9
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 3.6e-14 83.2 83 54.2
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 8.8e-13 78.6 83 50.6
A02p37740 Brassica napus HOM05D026193 ORTHO05D028104 6.3e-11 72.4 169 36.1
BraA02t08756Z Brassica rapa HOM05D026193 ORTHO05D028104 6.3e-11 72.4 165 35.2
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 1.1e-07 61.6 84 48.8
Actinidia30088 Actinidia chinensis HOM05D005470 ORTHO05D057321 2.7e-06 57.0 44 70.5


User provided reference genes

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