Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G204400 Prunus persica HOM05D005884 ORTHO05D007282 1.4e-100 369.8 215 100.0
FAN15G1921 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.1e-55 220.7 223 64.6
FAN27G0062 Fragaria x ananassa HOM05D005884 ORTHO05D007282 6.6e-53 211.5 222 64.9
FAN24G3425 Fragaria x ananassa HOM05D005884 ORTHO05D007282 2.5e-52 209.5 222 64.0
RcHm_v2.0_Chr6g0285061 Rosa chinensis HOM05D005884 ORTHO05D007282 5.6e-52 208.4 220 63.6
FAN15G1595 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.2e-51 207.2 223 63.2
FvH4_2g19250 Fragaria vesca HOM05D005884 ORTHO05D007282 2.8e-51 206.1 222 63.5
MD05G1177500 Malus domestica HOM05D005884 ORTHO05D007282 1.4e-47 193.7 218 63.8
GSVIVG01028583001 Vitis vinifera HOM05D005884 ORTHO05D007282 2.0e-33 146.7 222 54.1
Ciclev10022209m.g Citrus clementina HOM05D005884 ORTHO05D007282 4.9e-32 142.1 221 48.9
Thecc.01G227600 Theobroma cacao HOM05D005884 ORTHO05D007282 1.4e-31 140.6 171 52.0
CiPaw.03G150900 Carya illinoinensis HOM05D005884 ORTHO05D007282 5.4e-31 138.7 214 48.1
Duzib133G0404 Durio zibethinus HOM05D005884 ORTHO05D007282 2.1e-30 136.7 167 54.5
CiPaw.04G106200 Carya illinoinensis HOM05D005884 ORTHO05D007282 7.8e-30 134.8 219 46.6
Dinv04661 Davidia involucrata HOM05D005884 ORTHO05D007282 1.0e-29 134.4 148 60.1
Nn1g07794 Nelumbo nucifera HOM05D005884 ORTHO05D007282 1.3e-29 134.0 177 52.5
TAR362G0919 Trochodendron aralioides HOM05D005884 ORTHO05D007282 1.7e-29 133.7 219 47.9
CSS0024949 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 6.6e-29 131.7 195 53.3
Cc03_g12390 Coffea canephora HOM05D005884 ORTHO05D007282 8.6e-29 131.3 218 46.3
MD10G1165900 Malus domestica HOM05D005884 ORTHO05D007282 8.6e-29 131.3 128 66.4
TAR633G1722 Trochodendron aralioides HOM05D005884 ORTHO05D007282 8.6e-29 131.3 200 54.5
CSS0032503 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 1.9e-28 130.2 195 53.3
Lj3g0000124 Lotus japonicus HOM05D005884 ORTHO05D007282 1.2e-27 127.5 151 57.0
Haze_24787 Corylus avellana HOM05D005884 ORTHO05D007282 2.8e-27 126.3 134 60.4
Potri.002G241000 Populus trichocarpa HOM05D005884 ORTHO05D007282 2.8e-27 126.3 210 46.7
Rhsim01G0257200 Rhododendron simsii HOM05D005884 ORTHO05D007282 2.8e-27 126.3 205 47.3
Cfa002560 Carpinus fangiana HOM05D005884 ORTHO05D007282 6.2e-27 125.2 134 59.7
Dinv19212 Davidia involucrata HOM05D005884 ORTHO05D007282 8.1e-27 124.8 228 43.9
Gorai.001G186100 Gossypium raimondii HOM05D005884 ORTHO05D007282 8.1e-27 124.8 193 50.8
Aqoxy2G03761 Aquilegia oxysepala HOM05D005884 ORTHO05D007282 1.4e-26 124.0 204 46.1
Cpa.g.sc8.170 Carica papaya HOM05D005884 ORTHO05D007282 2.4e-26 123.2 169 51.5
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 2.4e-26 123.2 128 59.4
QL02p021928 Quercus lobata HOM05D005884 ORTHO05D007282 3.1e-26 122.9 209 48.8
TWI36G0226 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 3.1e-26 122.9 195 46.2
Oeu015899.1 Olea europaea HOM05D005884 ORTHO05D007282 4.0e-26 122.5 112 65.2
PGR044G0377 Punica granatum HOM05D005884 ORTHO05D007282 5.2e-26 122.1 156 51.9
Gohir.A07G156200 Gossypium hirsutum HOM05D005884 ORTHO05D007282 6.9e-26 121.7 191 47.1
Gohir.D07G162500 Gossypium hirsutum HOM05D005884 ORTHO05D007282 6.9e-26 121.7 193 51.3
Actinidia23729 Actinidia chinensis HOM05D005884 ORTHO05D007282 8.9e-26 121.3 224 45.5
ClCG09G009110 Citrullus lanatus HOM05D005884 ORTHO05D007282 8.9e-26 121.3 166 50.0
Lj2A1133T33 Lonicera japonica HOM05D005884 ORTHO05D007282 1.2e-25 120.9 131 58.0
TWI18G1166 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 1.5e-25 120.6 197 46.7
Hma1.2p1_0351F.1_g132860 Hydrangea macrophylla HOM05D005884 ORTHO05D007282 2.0e-25 120.2 183 48.6
Eucgr.H00802 Eucalyptus grandis HOM05D005884 ORTHO05D007282 2.6e-25 119.8 99 70.7
arahy.Tifrunner.gnm1.ann1.C60K2U Arachis hypogaea HOM05D005884 ORTHO05D007282 3.4e-25 119.4 118 61.9
arahy.Tifrunner.gnm1.ann1.Q3DN0U Arachis hypogaea HOM05D005884 ORTHO05D007282 3.4e-25 119.4 132 58.3
HanXRQChr01g0014641 Helianthus annuus HOM05D005884 ORTHO05D007282 4.4e-25 119.0 131 56.5
Sc05g0002430 Simmondsia chinensis HOM05D005884 ORTHO05D007282 4.4e-25 119.0 106 67.0
CsaV3_7G025830 Cucumis sativus L. HOM05D005884 ORTHO05D007282 7.6e-25 118.2 158 49.4
ECA248G2691 Erigeron canadensis HOM05D005884 ORTHO05D007282 7.6e-25 118.2 103 66.0
vmacro14762 Vaccinium macrocarpon HOM05D005884 ORTHO05D007282 9.9e-25 117.9 208 42.3
Sabra02G0183600 Salix brachista HOM05D005884 ORTHO05D007282 2.9e-24 116.3 218 42.7
Ca_20129_v3 Cicer arietinum L. HOM05D005884 ORTHO05D007282 3.8e-24 115.9 79 78.5
Phvul.010G014200 Phaseolus vulgaris HOM05D005884 ORTHO05D007282 3.8e-24 115.9 150 52.7
Manes.13G044700 Manihot esculenta HOM05D005884 ORTHO05D007282 4.9e-24 115.5 224 45.1
EL10Ac7g17785 Beta vulgaris HOM05D005884 ORTHO05D007282 8.4e-24 114.8 155 51.0
MELO3C012764.2 Cucumis melo HOM05D005884 ORTHO05D007282 1.1e-23 114.4 160 48.8
Glyma.03G080200 Glycine max HOM05D005884 ORTHO05D007282 1.4e-23 114.0 158 49.4
CAN.G122.4 Capsicum annuum HOM05D005884 ORTHO05D007282 1.9e-23 113.6 85 71.8
Solyc09g061440.4 Solanum lycopersicum HOM05D005884 ORTHO05D007282 1.9e-23 113.6 85 70.6
Duzib138G0327 Durio zibethinus HOM05D005884 ORTHO05D007282 2.4e-23 113.2 131 55.0
Hund18350 Selenicereus undatus HOM05D005884 ORTHO05D007282 2.4e-23 113.2 195 45.6
Lsat_1_v5_gn_5_179880 Lactuca sativa HOM05D005884 ORTHO05D007282 3.2e-23 112.8 163 45.4
Manes.12G041200 Manihot esculenta HOM05D005884 ORTHO05D007282 4.2e-23 112.5 112 58.0
PGSC0003DMG400028009 Solanum tuberosum HOM05D005884 ORTHO05D007282 5.4e-23 112.1 73 79.5
Migut.D00525 Erythranthe guttata HOM05D005884 ORTHO05D007282 7.1e-23 111.7 137 51.1
Nitab4.5_0000866g0050 Nicotiana tabacum HOM05D005884 ORTHO05D007282 7.1e-23 111.7 86 69.8
MSTRG.18383 Avicennia marina HOM05D005884 ORTHO05D007282 9.3e-23 111.3 174 50.0
Nitab4.5_0003790g0020 Nicotiana tabacum HOM05D005884 ORTHO05D007282 9.3e-23 111.3 109 61.5
AUR62031836 Chenopodium quinoa HOM05D005884 ORTHO05D007282 1.2e-22 110.9 153 52.3
PSO017G2163 Papaver somniferum HOM05D005884 ORTHO05D007282 1.2e-22 110.9 71 83.1
DCAR_018555 Daucus carota HOM05D005884 ORTHO05D007282 1.6e-22 110.5 135 52.6
AUR62008873 Chenopodium quinoa HOM05D005884 ORTHO05D007282 2.1e-22 110.2 141 50.4
Sopen09g024260 Solanum pennellii HOM05D005884 ORTHO05D007282 2.1e-22 110.2 143 49.7
Ah.08g213990 Amaranthus hybridus HOM05D005884 ORTHO05D007282 3.5e-22 109.4 145 51.7
Peaxi162Scf00107g01314 Petunia axillaris HOM05D005884 ORTHO05D007282 3.5e-22 109.4 100 62.0
CDE02G3372 Ceratophyllum demersum HOM05D005884 ORTHO05D007282 4.6e-22 109.0 103 61.2
Glyma.18G149300 Glycine max HOM05D005884 ORTHO05D007282 4.6e-22 109.0 158 47.5
CANSAT01G0442 Cannabis sativa HOM05D005884 ORTHO05D007282 1.0e-21 107.8 191 47.6
Carub.0007s2947 Capsella rubella HOM05D005884 ORTHO05D007282 1.0e-21 107.8 114 58.8
Thhalv10026263m.g Eutrema salsugineum HOM05D005884 ORTHO05D007282 1.0e-21 107.8 172 44.8
SGA_v2.0_scaffold8G04650 Striga asiatica HOM05D005884 ORTHO05D007282 1.3e-21 107.5 109 58.7
Sed0001531 Sechium edule HOM05D005884 ORTHO05D007282 1.7e-21 107.1 193 43.5
ATR0736G055 Amborella trichopoda HOM05D005884 ORTHO05D007282 3.9e-21 105.9 95 58.9
Lalb_Chr07g0194041 Lupinus albus HOM05D005884 ORTHO05D007282 3.9e-21 105.9 183 45.9
PSO063G4085 Papaver somniferum HOM05D005884 ORTHO05D007282 8.7e-21 104.8 139 52.5
BcaB03g16138 Brassica carinata HOM05D005884 ORTHO05D007282 1.1e-20 104.4 130 50.8
SalBow4G1286 Salvia bowleyana HOM05D005884 ORTHO05D007282 1.5e-20 104.0 146 50.0
Medtr4g017880 Medicago truncatula HOM05D005884 ORTHO05D007282 1.9e-20 103.6 162 46.9
Psat7g243200 Pisum sativum HOM05D005884 ORTHO05D007282 2.5e-20 103.2 188 44.7
Sp7g10660 Schrenkiella parvula HOM05D005884 ORTHO05D007282 2.5e-20 103.2 137 48.9
Gorai.009G365800 Gossypium raimondii HOM05D005884 ORTHO05D007282 5.6e-20 102.1 131 55.7
MBI07_g23671_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 5.6e-20 102.1 158 45.6
Migut.N02263 Erythranthe guttata HOM05D005884 ORTHO05D007282 2.1e-19 100.1 164 45.7
A04p08870 Brassica napus HOM05D005884 ORTHO05D007282 2.8e-19 99.8 131 56.5
Gohir.A09G200610 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.4e-18 97.4 120 55.8
BcaC02g09439 Brassica carinata HOM05D005884 ORTHO05D007282 1.8e-18 97.1 195 44.6
TPR.G8219 Trifolium pratense HOM05D005884 ORTHO05D007282 2.4e-18 96.7 125 52.0
BolC4t25837H Brassica oleracea HOM05D005884 ORTHO05D007282 3.1e-18 96.3 195 44.6
HPP92_022492 Vanilla planifolia HOM05D005884 ORTHO05D007282 3.1e-18 96.3 127 45.7
SEGI_25444 Sequoiadendron giganteum HOM05D005884 ORTHO05D007282 5.3e-18 95.5 67 74.6
BraA04t16580Z Brassica rapa HOM05D005884 ORTHO05D007282 6.9e-18 95.1 194 43.8
THA.LOC104808781 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 2.0e-17 93.6 177 42.9
unitig_22.g6325 Utricularia gibba HOM05D005884 ORTHO05D007282 7.6e-17 91.7 156 42.3
C04p42740 Brassica napus HOM05D005884 ORTHO05D007282 1.7e-16 90.5 76 68.4
TAR194G0001 Trochodendron aralioides HOM05D005884 ORTHO05D004773 3.8e-16 89.4 131 54.2
MBI10_g44186_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 1.4e-15 87.4 149 43.0
MSTRG.17548 Avicennia marina HOM05D005884 ORTHO05D007282 1.9e-15 87.0 152 44.7
Os04g0513000 Oryza sativa ssp. japonica HOM05D005884 ORTHO05D007282 7.1e-15 85.1 123 43.1
Zm00001eb426500 Zea mays HOM05D005884 ORTHO05D007282 7.1e-15 85.1 121 43.8
THA.LOC104804605 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 9.3e-15 84.7 91 57.1
VMungo0331G1358 Vigna mungo HOM05D005884 ORTHO05D007282 1.2e-14 84.3 111 49.5
CARHR218670 Cardamine hirsuta HOM05D005884 ORTHO05D007282 1.8e-13 80.5 147 42.9
Atru.chr3.3178 Acer truncatum HOM05D005884 ORTHO05D007282 3.9e-13 79.3 116 48.3
Mapoly0028s0026 Marchantia polymorpha HOM05D005884 ORTHO05D007282 6.7e-13 78.6 186 36.6
MBI06_g14323_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 1.9e-12 77.0 77 55.8
AT4G13200 Arabidopsis thaliana HOM05D005884 ORTHO05D007282 2.5e-12 76.6 107 51.4
SalBow2G0198 Salvia bowleyana HOM05D005884 ORTHO05D007282 5.6e-12 75.5 81 51.9
AL9U10790 Arabidopsis lyrata HOM05D005884 ORTHO05D007282 6.2e-11 72.0 148 41.2
Sed0008993 Sechium edule HOM05D005884 ORTHO05D007282 1.4e-10 70.9 98 52.0
AagrBONN_evm.TU.Sc2ySwM_228.3174 Anthoceros agrestis HOM05D005884 ORTHO05D007282 1.8e-10 70.5 49 69.4
Aa31LG9G4610 Aethionema arabicum HOM05D005884 ORTHO05D007282 3.1e-10 69.7 212 37.3
MCO02G464 Micromonas commoda HOM05D005884 ORTHO05D007282 7.6e-09 65.1 62 54.8
Gohir.A03G143925 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.3e-08 64.3 105 50.5
Gorai.001G116800 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.3e-08 64.3 106 50.9
Gorai.001G128300 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.3e-08 64.3 105 50.5
Gorai.002G226800 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.3e-08 64.3 106 50.9
Pp3c5_25810 Physcomitrium patens HOM05D005884 ORTHO05D007282 9.3e-07 58.2 142 36.6


User provided reference genes

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