Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 4.7e-299 1030.4 518 100.0
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 1.5e-239 832.8 518 81.3
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 1.4e-218 763.1 516 75.6
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 1.8e-218 762.7 518 75.7
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.9e-215 752.7 518 74.9
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 6.6e-208 727.6 481 77.1
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 8.6e-208 727.2 571 68.0
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 3.8e-171 605.5 520 61.5
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 3.4e-164 582.4 519 61.7
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 4.5e-164 582.0 519 61.5
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 2.2e-163 579.7 519 60.3
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 2.3e-160 569.7 521 60.5
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 1.8e-157 560.1 519 57.8
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 1.1e-154 550.8 524 58.8
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 1.4e-154 550.4 528 58.5
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 1.9e-154 550.1 519 58.0
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 1.8e-152 543.5 519 56.1
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 2.3e-152 543.1 519 56.6
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 5.1e-152 542.0 520 55.6
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 1.1e-151 540.8 519 55.9
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 1.9e-151 540.0 603 54.1
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 2.5e-151 539.7 519 56.5
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 3.3e-151 539.3 528 55.1
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 5.7e-151 538.5 522 56.3
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 2.1e-150 536.6 524 56.7
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 1.5e-148 530.4 519 55.5
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 1.2e-145 520.8 519 54.5
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 1.2e-145 520.8 527 55.4
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 5.1e-144 515.4 574 52.3
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 2.2e-142 510.0 521 55.7
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 6.9e-141 505.0 484 58.3
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 6.5e-139 498.4 520 54.8
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 1.9e-138 496.9 519 52.2
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 1.9e-138 496.9 519 52.0
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 1.6e-137 493.8 520 50.6
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 2.1e-137 493.4 521 52.6
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 2.7e-137 493.0 519 52.6
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 2.3e-136 490.0 524 53.2
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 2.3e-136 490.0 520 52.5
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 5.7e-135 485.3 535 51.8
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 7.4e-135 485.0 520 53.8
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 2.8e-134 483.0 523 54.9
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 2.8e-134 483.0 523 54.9
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 1.1e-133 481.1 519 53.4
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 3.1e-133 479.6 522 51.0
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 8.5e-131 471.5 519 50.3
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 3.2e-130 469.5 518 52.1
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.2e-130 469.5 486 53.1
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 1.8e-128 463.8 521 50.5
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 3.0e-128 463.0 515 50.9
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 2.0e-127 460.3 523 50.1
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.8e-126 456.4 521 48.4
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 3.1e-125 453.0 518 50.0
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 2.0e-124 450.3 521 50.1
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 4.5e-124 449.1 521 48.0
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 1.0e-123 448.0 519 48.7
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 1.7e-123 447.2 517 48.2
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 5.0e-123 445.7 512 48.6
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 6.5e-123 445.3 520 49.0
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 8.5e-123 444.9 531 46.9
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 8.5e-123 444.9 525 50.7
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 1.9e-122 443.7 493 51.1
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 3.2e-122 443.0 505 49.5
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 2.7e-121 439.9 522 48.1
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 3.6e-121 439.5 522 47.9
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 4.7e-121 439.1 446 54.0
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 1.0e-120 438.0 526 48.1
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 1.0e-120 438.0 483 50.1
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 1.4e-120 437.6 522 47.7
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 1.8e-120 437.2 517 48.5
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 1.8e-120 437.2 522 47.9
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 1.8e-120 437.2 517 48.5
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 1.8e-120 437.2 519 49.5
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 1.8e-120 437.2 555 47.4
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 2.3e-120 436.8 448 54.5
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 2.3e-120 436.8 518 48.3
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 3.0e-120 436.4 516 48.6
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 4.0e-120 436.0 464 50.6
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 9.7e-119 431.4 522 50.8
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 1.1e-117 427.9 459 51.2
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 1.4e-117 427.6 519 48.0
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 2.4e-117 426.8 460 51.7
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 5.3e-117 425.6 519 48.2
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 9.1e-117 424.9 612 43.5
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 1.7e-115 420.6 462 50.2
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 2.9e-115 419.9 526 46.8
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 5.7e-111 405.6 521 45.9
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 1.7e-110 404.1 523 45.9
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 4.8e-110 402.5 529 43.7
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 7.0e-109 398.7 522 45.2
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.2e-105 387.9 353 58.4
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 1.2e-103 381.3 504 42.9
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 2.8e-102 376.7 489 47.9
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 7.0e-93 345.5 269 67.7
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 1.3e-91 341.3 373 49.6
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 3.0e-91 340.1 376 49.5
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 2.0e-87 327.4 526 39.2
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 1.3e-86 324.7 455 43.7
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.0e-83 313.5 289 59.2
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 3.1e-80 303.5 374 46.5
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 3.4e-79 300.1 446 39.2
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 2.4e-72 277.3 209 68.9
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 6.8e-72 275.8 501 37.7
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 6.2e-65 252.7 316 45.3
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 3.3e-58 230.3 192 64.6
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 1.3e-57 228.4 472 36.2
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 7.1e-53 212.6 289 46.0
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 9.3e-53 212.2 455 32.3
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 5.1e-51 206.5 235 46.4
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 8.7e-51 205.7 309 41.1
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 6.2e-49 199.5 289 43.3
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 1.5e-47 194.9 482 32.2
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 4.5e-47 193.4 142 66.9
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 7.6e-47 192.6 438 32.0
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 7.6e-47 192.6 298 39.9
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 1.1e-45 188.7 270 42.6
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 2.1e-36 157.9 141 55.3
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.3e-30 138.7 125 60.0
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 3.2e-29 134.0 118 59.3
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 8.8e-27 125.9 126 54.0
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 6.9e-24 116.3 145 42.8
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 6.7e-19 99.8 143 39.2
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 1.2e-15 89.0 240 30.0
TAR362G0264 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.5e-15 88.6 109 44.0
Haze_05914 Corylus avellana HOM05D006020 ORTHO05D007665 4.2e-13 80.5 103 42.7
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 6.7e-11 73.2 80 50.0
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.1e-10 72.4 80 48.8
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 1.7e-09 68.6 62 56.5
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 2.4e-08 64.7 151 31.1
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 2.2e-06 58.2 63 42.9


User provided reference genes

Program Settings