Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 4.7e-77 291.2 156 100.0
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 2.3e-15 86.3 56 83.9
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 1.1e-14 84.0 60 80.0
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 7.4e-14 81.3 62 77.4
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 7.4e-14 81.3 62 75.8
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 9.7e-14 80.9 56 76.8
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 1.3e-13 80.5 54 79.6
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 1.7e-13 80.1 56 78.6
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.7e-13 80.1 56 78.6
Lj3g0027829 Lotus japonicus HOM05D005458 ORTHO05D005672 1.7e-13 80.1 53 81.1
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 1.7e-13 80.1 60 76.7
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 2.2e-13 79.7 64 76.6
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.2e-13 79.7 62 75.8
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 2.8e-13 79.3 56 82.1
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 2.8e-13 79.3 58 79.3
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 3.7e-13 79.0 61 78.7
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 8.2e-13 77.8 77 66.2
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 8.2e-13 77.8 78 62.8
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 8.2e-13 77.8 56 75.0
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 1.1e-12 77.4 57 75.4
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.1e-12 77.4 54 81.5
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 1.8e-12 76.6 64 75.0
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 2.4e-12 76.3 76 59.2
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 2.4e-12 76.3 54 79.6
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 3.1e-12 75.9 59 74.6
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 3.1e-12 75.9 59 74.6
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 4.1e-12 75.5 56 78.6
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 4.1e-12 75.5 61 75.4
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 5.3e-12 75.1 62 79.0
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 5.3e-12 75.1 68 69.1
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 9.1e-12 74.3 62 74.2
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 9.1e-12 74.3 52 82.7
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 1.2e-11 73.9 63 73.0
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 1.2e-11 73.9 58 69.0
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 1.2e-11 73.9 64 70.3
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 1.6e-11 73.6 65 70.8
VMungo0331G1336 Vigna mungo HOM05D005458 ORTHO05D005672 1.6e-11 73.6 54 75.9
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 2.0e-11 73.2 58 77.6
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 2.0e-11 73.2 48 79.2
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 2.0e-11 73.2 62 74.2
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 2.6e-11 72.8 141 41.8
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 3.5e-11 72.4 48 81.2
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 4.5e-11 72.0 61 72.1
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 4.5e-11 72.0 47 80.9
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 4.5e-11 72.0 66 60.6
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 4.5e-11 72.0 54 77.8
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 4.5e-11 72.0 65 73.8
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 5.9e-11 71.6 63 73.0
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 5.9e-11 71.6 63 68.3
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 5.9e-11 71.6 58 70.7
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 7.7e-11 71.2 66 65.2
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 1.0e-10 70.9 50 82.0
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 1.0e-10 70.9 49 83.7
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.0e-10 70.9 48 77.1
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.0e-10 70.9 48 77.1
MD05G1174200 Malus domestica HOM05D005458 ORTHO05D005672 1.0e-10 70.9 62 67.7
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 1.3e-10 70.5 76 57.9
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 1.3e-10 70.5 56 73.2
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 1.3e-10 70.5 63 66.7
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 1.3e-10 70.5 57 75.4
ClCG09G008920 Citrullus lanatus HOM05D001590 ORTHO05D005672 1.7e-10 70.1 73 60.3
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.7e-10 70.1 62 67.7
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.7e-10 70.1 62 67.7
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 1.7e-10 70.1 65 67.7
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 2.2e-10 69.7 46 82.6
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 2.2e-10 69.7 52 78.8
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 2.2e-10 69.7 50 82.0
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 2.9e-10 69.3 48 83.3
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 2.9e-10 69.3 48 83.3
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 2.9e-10 69.3 56 76.8
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 2.9e-10 69.3 50 80.0
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 2.9e-10 69.3 62 64.5
CiPaw.03G148500 Carya illinoinensis HOM05D005458 ORTHO05D005672 3.8e-10 68.9 61 68.9
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 3.8e-10 68.9 58 72.4
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 3.8e-10 68.9 63 68.3
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 5.0e-10 68.6 48 83.3
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 8.5e-10 67.8 45 86.7
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 1.1e-09 67.4 45 82.2
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 1.1e-09 67.4 48 77.1
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 1.1e-09 67.4 48 77.1
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 1.1e-09 67.4 62 67.7
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 1.5e-09 67.0 49 79.6
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 1.5e-09 67.0 69 66.7
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 1.9e-09 66.6 48 81.2
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 1.9e-09 66.6 48 81.2
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 1.9e-09 66.6 48 81.2
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.9e-09 66.6 48 79.2
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 1.9e-09 66.6 59 69.5
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.9e-09 66.6 56 69.6
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 1.9e-09 66.6 50 78.0
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 2.5e-09 66.2 49 77.6
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 3.2e-09 65.9 48 79.2
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 3.2e-09 65.9 54 77.8
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 3.2e-09 65.9 48 79.2
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 4.2e-09 65.5 58 69.0
COL.COLO4_12105 Corchorus olitorius HOM05D001094 ORTHO05D001050 5.5e-09 65.1 52 69.2
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 7.2e-09 64.7 48 75.0
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 9.4e-09 64.3 56 75.0
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 9.4e-09 64.3 58 63.8
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 1.2e-08 63.9 61 68.9
arahy.Tifrunner.gnm1.ann1.U1G5UA Arachis hypogaea HOM05D005458 ORTHO05D005672 1.6e-08 63.5 43 81.4
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.6e-08 63.5 54 70.4
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 2.1e-08 63.2 70 58.6
Psat4g203440 Pisum sativum HOM05D005458 ORTHO05D005672 2.1e-08 63.2 71 56.3
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 2.7e-08 62.8 50 74.0
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 6.1e-08 61.6 60 70.0
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 8.0e-08 61.2 45 80.0
BcaB04g17662 Brassica carinata HOM05D005458 ORTHO05D005672 1.0e-07 60.8 45 80.0
Dinv27235 Davidia involucrata HOM05D005458 ORTHO05D005672 1.0e-07 60.8 53 73.6
Aa31LG9G4030 Aethionema arabicum HOM05D005458 ORTHO05D005672 1.8e-07 60.1 44 79.5
Cc01_g16920 Coffea canephora HOM05D005458 ORTHO05D005672 2.3e-07 59.7 39 82.1
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 2.3e-07 59.7 61 65.6
Phvul.010G019201 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 2.3e-07 59.7 84 50.0
Medtr8g013640 Medicago truncatula HOM05D005458 ORTHO05D005672 3.0e-07 59.3 57 64.9
MELO3C021034.2 Cucumis melo HOM05D005458 ORTHO05D005672 6.7e-07 58.2 46 73.9
Sp7g11280 Schrenkiella parvula HOM05D017066 ORTHO05D005672 8.8e-07 57.8 43 79.1
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 1.2e-06 57.4 45 68.9
Manes.03G147401 Manihot esculenta HOM05D005458 ORTHO05D005672 1.2e-06 57.4 64 60.9
ECA236G0552 Erigeron canadensis HOM05D001779 ORTHO05D001753 1.5e-06 57.0 51 62.7
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 2.0e-06 56.6 55 70.9
Ah.05g178960 Amaranthus hybridus HOM05D005458 ORTHO05D005672 2.6e-06 56.2 45 73.3
Glyma.16G094600 Glycine max HOM05D005458 ORTHO05D005672 2.6e-06 56.2 52 61.5
Rhsim04G0088400 Rhododendron simsii HOM05D005388 ORTHO05D006281 3.3e-06 55.8 50 66.0
AL8G12500 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 5.7e-06 55.1 53 67.9
CSS0011663 Camellia sinensis var. sinensis HOM05D005458 ORTHO05D005672 5.7e-06 55.1 37 81.1
Rhsim13G0046400 Rhododendron simsii HOM05D005458 ORTHO05D005672 9.7e-06 54.3 47 66.0


User provided reference genes

Program Settings