Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 0.0e+00 1130.5 602 100.0
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 4.9e-311 1070.5 602 94.2
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 3.1e-310 1067.8 602 94.4
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 2.5e-283 978.4 600 86.5
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.6e-282 975.7 598 83.9
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 2.3e-281 971.8 595 86.6
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 1.3e-279 966.1 600 84.8
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 2.8e-279 964.9 600 84.3
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 1.2e-277 959.5 599 83.1
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.7e-277 958.4 599 83.0
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.5e-277 958.0 599 83.0
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.8e-276 954.5 598 82.4
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 5.0e-276 954.1 598 84.1
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.5e-275 952.6 600 85.3
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 7.2e-275 950.3 600 81.3
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 2.1e-274 948.7 600 83.5
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 3.6e-274 948.0 600 84.8
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 4.0e-273 944.5 600 83.7
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 6.8e-273 943.7 600 81.0
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.5e-272 942.6 600 81.0
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 2.6e-272 941.8 600 81.7
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 1.3e-271 939.5 601 82.0
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 2.2e-271 938.7 600 82.5
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 4.9e-271 937.6 600 82.2
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 1.1e-270 936.4 600 82.3
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 1.8e-270 935.6 600 83.3
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 5.4e-270 934.1 600 82.3
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 2.6e-264 915.2 600 80.8
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 5.8e-264 914.1 600 80.7
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 1.7e-263 912.5 598 81.3
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 6.4e-263 910.6 601 81.4
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.4e-262 908.7 601 79.5
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 4.1e-262 907.9 598 80.6
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 4.1e-262 907.9 598 80.6
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 3.5e-261 904.8 598 79.9
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 7.8e-261 903.7 600 79.3
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 3.0e-260 901.7 596 78.0
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 3.9e-260 901.4 600 78.5
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.0e-260 901.0 600 78.5
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 6.6e-260 900.6 610 77.5
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 8.6e-260 900.2 601 80.0
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 9.5e-259 896.7 600 78.0
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 1.2e-258 896.3 608 79.4
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 2.1e-258 895.6 608 77.3
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 2.8e-258 895.2 604 78.3
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.8e-258 895.2 602 77.9
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 8.1e-258 893.6 600 78.7
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 8.1e-258 893.6 607 79.2
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.8e-257 892.5 601 76.9
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 2.6e-256 888.6 601 77.4
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.4e-256 888.3 610 73.8
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.4e-256 888.3 610 73.8
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 2.2e-255 885.6 603 76.6
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 3.2e-254 881.7 602 76.1
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 7.1e-254 880.6 598 76.8
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 7.1e-254 880.6 604 76.7
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 9.2e-254 880.2 599 76.5
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 1.6e-253 879.4 601 76.9
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.6e-253 879.4 604 76.3
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 2.1e-253 879.0 601 75.0
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 2.1e-253 879.0 601 75.0
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 2.1e-253 879.0 604 76.3
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 3.5e-253 878.2 601 77.0
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 7.8e-253 877.1 604 75.5
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 7.8e-253 877.1 604 75.8
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 1.3e-252 876.3 604 76.3
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.3e-252 875.5 600 76.7
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 3.0e-252 875.2 598 76.9
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 3.9e-252 874.8 598 76.1
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 3.9e-252 874.8 598 76.1
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 3.9e-252 874.8 598 76.1
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 3.9e-252 874.8 604 76.7
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 2.5e-251 872.1 606 74.8
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 7.3e-251 870.5 599 76.5
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 6.2e-250 867.5 601 76.0
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 6.2e-250 867.5 601 78.0
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.4e-249 866.3 602 76.4
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.4e-249 866.3 602 77.1
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 2.3e-249 865.5 599 75.3
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 2.0e-248 862.4 602 75.4
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.9e-247 858.6 610 74.4
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 9.2e-246 853.6 607 74.1
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 1.6e-245 852.8 604 75.0
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 2.7e-245 852.0 602 73.3
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 2.7e-245 852.0 614 74.6
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 1.0e-244 850.1 602 72.8
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.0e-244 850.1 601 73.0
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 1.7e-244 849.4 602 75.7
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 2.3e-244 849.0 602 74.6
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 6.6e-244 847.4 609 75.9
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 7.3e-243 844.0 602 74.8
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 3.6e-242 841.6 594 74.9
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 6.2e-242 840.9 597 75.7
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 4.4e-240 834.7 597 74.7
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 9.9e-240 833.6 597 74.7
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 2.2e-239 832.4 605 73.1
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 4.9e-239 831.2 605 72.6
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 2.7e-237 825.5 602 74.1
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 6.0e-237 824.3 603 73.0
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.1e-235 820.1 597 75.4
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 1.9e-235 819.3 604 73.3
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 3.6e-234 815.1 597 73.7
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 3.4e-232 808.5 551 75.7
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 3.4e-232 808.5 598 69.7
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.7e-231 806.2 554 72.7
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 1.7e-228 796.2 643 68.7
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 1.1e-227 793.5 609 71.8
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.2e-224 783.5 600 68.8
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.9e-223 778.1 600 70.5
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 8.1e-218 760.8 600 69.5
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 8.1e-218 760.8 602 69.8
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 2.4e-217 759.2 879 52.3
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 3.1e-217 758.8 611 67.4
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 5.8e-216 754.6 609 67.3
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 1.9e-214 749.6 600 70.5
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 5.1e-212 741.5 618 66.2
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.2e-208 730.3 598 66.1
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 7.6e-208 727.6 598 67.2
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.3e-202 710.3 569 66.4
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 7.7e-192 674.5 474 76.6
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 4.1e-177 625.5 445 76.0
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.7e-173 612.8 598 58.7
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 9.8e-171 604.4 523 67.3
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 3.0e-156 556.2 606 53.0
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 2.6e-155 553.1 603 51.2
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 7.5e-147 525.0 604 52.5
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 8.3e-138 495.0 600 52.5
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 3.5e-128 463.0 587 47.0
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 8.6e-127 458.4 617 45.2
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 5.1e-87 326.2 209 75.6
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 8.2e-85 318.9 243 65.8
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 1.8e-84 317.8 328 57.0
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 1.1e-78 298.5 624 36.7
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 5.3e-68 263.1 243 65.8
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.2e-66 257.7 273 54.9
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 1.2e-59 235.3 590 28.8
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 4.1e-52 210.3 148 72.3
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 4.7e-48 196.8 151 66.9
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 2.8e-32 144.4 98 70.4
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.1e-31 142.5 201 42.8
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 2.3e-31 141.4 605 26.6
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 2.3e-23 114.8 76 68.4
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 2.0e-22 111.7 76 67.1
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 7.5e-22 109.8 116 50.9
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 4.1e-20 104.0 217 48.8
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 2.5e-17 94.7 114 43.0
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.2e-14 85.9 90 46.7
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 4.4e-14 84.0 59 72.9
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 9.9e-06 56.2 99 35.4


User provided reference genes

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