Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 3.8e-312 1073.5 549 100.0
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 6.6e-275 950.3 549 89.3
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 4.3e-274 947.6 549 89.1
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 2.2e-262 908.7 553 85.4
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 4.6e-260 901.0 553 84.6
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 7.8e-260 900.2 553 84.1
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 4.3e-258 894.4 553 83.9
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 8.1e-257 890.2 554 82.9
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 1.3e-246 856.3 557 80.6
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 3.8e-246 854.7 552 81.0
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 1.8e-240 835.9 565 78.4
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 4.0e-240 834.7 552 78.3
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.5e-239 832.8 552 78.1
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 2.6e-239 832.0 550 78.7
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 4.5e-239 831.2 553 79.7
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 4.5e-239 831.2 552 78.8
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 1.3e-238 829.7 553 79.7
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 1.9e-237 825.9 553 80.3
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 9.3e-237 823.5 559 77.8
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.6e-236 822.8 552 77.5
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 2.1e-236 822.4 557 77.9
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 3.5e-236 821.6 553 77.8
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 5.7e-234 814.3 553 78.7
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 1.6e-233 812.8 553 78.7
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 5.0e-230 801.2 553 76.7
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 5.5e-229 797.7 552 77.4
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 6.7e-227 790.8 558 76.5
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 1.5e-223 779.6 551 74.8
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 3.4e-223 778.5 552 75.0
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 6.1e-220 767.7 559 74.1
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 6.7e-219 764.2 556 75.0
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.2e-215 753.4 553 72.0
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 5.9e-215 751.1 541 74.5
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 3.8e-214 748.4 558 74.0
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 5.0e-214 748.0 636 66.7
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 6.5e-214 747.7 518 76.3
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 2.1e-212 742.7 559 72.8
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 3.6e-212 741.9 554 73.6
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.4e-211 740.0 559 71.6
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 3.0e-211 738.8 556 71.6
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 8.8e-211 737.3 606 66.3
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.1e-210 736.9 554 71.1
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 2.0e-210 736.1 554 71.1
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 2.0e-210 736.1 559 73.2
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 3.3e-210 735.3 554 72.2
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 2.2e-209 732.6 562 71.9
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 4.8e-209 731.5 555 71.0
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 1.1e-208 730.3 555 72.8
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 1.1e-208 730.3 555 70.6
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 2.0e-207 726.1 554 72.7
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 2.0e-207 726.1 553 72.3
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 4.5e-207 724.9 554 72.2
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 7.7e-207 724.2 543 71.3
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.3e-206 723.4 557 70.0
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 6.5e-206 721.1 545 73.4
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.5e-205 719.9 573 68.6
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 4.0e-203 711.8 555 69.2
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 4.0e-203 711.8 561 70.1
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 5.7e-202 708.0 552 68.8
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 6.3e-201 704.5 554 69.1
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 5.9e-199 698.0 560 68.0
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 1.0e-198 697.2 554 68.6
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 6.5e-198 694.5 554 68.1
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 8.5e-198 694.1 554 67.7
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 1.9e-197 693.0 560 67.9
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 9.4e-197 690.6 612 64.9
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 2.7e-196 689.1 554 69.9
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 2.3e-195 686.0 555 67.4
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 4.0e-195 685.3 569 68.0
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.2e-194 683.7 572 65.4
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.3e-193 680.2 575 64.9
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 6.3e-193 677.9 584 63.5
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 6.3e-193 677.9 559 67.3
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 6.3e-193 677.9 467 76.9
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 2.7e-191 672.5 565 67.1
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.8e-190 668.7 693 56.1
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 9.5e-189 664.1 553 66.0
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.6e-186 656.0 692 55.1
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 7.5e-186 654.4 557 65.4
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 1.9e-181 639.8 581 61.1
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 3.3e-181 639.0 449 76.2
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 4.3e-181 638.6 515 67.8
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 2.8e-180 636.0 562 64.1
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 3.6e-180 635.6 468 70.7
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 4.7e-180 635.2 638 58.8
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 1.4e-176 623.6 571 62.9
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 2.7e-175 619.4 569 63.1
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 4.6e-175 618.6 577 62.9
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 1.3e-174 617.1 570 62.5
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 3.0e-174 615.9 571 62.2
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 1.5e-173 613.6 566 62.2
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 1.9e-173 613.2 573 62.8
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 4.3e-173 612.1 572 62.8
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 1.6e-172 610.1 570 61.6
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 3.0e-166 589.3 563 62.5
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 6.4e-161 571.6 576 61.5
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 1.1e-160 570.9 571 61.8
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 1.1e-160 570.9 571 61.8
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 2.4e-160 569.7 563 61.3
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 1.1e-157 560.8 576 59.9
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 1.5e-157 560.5 555 58.6
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 3.3e-157 559.3 576 59.7
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 8.9e-155 551.2 560 57.7
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 1.7e-153 547.0 558 59.5
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.1e-152 544.3 533 59.8
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 4.3e-149 532.3 432 68.8
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 7.8e-143 511.5 413 68.3
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 3.0e-142 509.6 566 53.5
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 7.6e-138 495.0 581 51.8
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 1.4e-136 490.7 568 52.5
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 9.6e-133 478.0 557 52.6
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 4.2e-128 462.6 563 51.5
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 6.0e-127 458.8 555 49.9
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 9.0e-123 444.9 400 62.0
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 1.3e-100 371.3 561 45.6
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 1.3e-97 361.3 309 65.4
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 5.0e-97 359.4 550 43.5
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 1.1e-93 348.2 285 64.9
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 6.5e-81 305.8 361 48.5
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 2.1e-79 300.8 502 41.8
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 3.0e-57 227.3 466 39.5
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 3.1e-54 217.2 264 44.3
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.1e-35 155.6 157 60.5
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 2.1e-31 141.4 112 68.8
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 2.2e-28 131.3 86 76.7
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 1.1e-27 129.0 91 74.7
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 2.1e-23 114.8 84 69.0
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 1.2e-18 99.0 208 29.3
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 6.0e-18 96.7 218 33.0
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 3.9e-17 94.0 236 29.2
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 8.7e-17 92.8 74 64.9
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 9.6e-16 89.4 185 37.3
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.1e-14 85.9 231 28.1
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 1.1e-11 75.9 62 67.7
TAR633G2245 Trochodendron aralioides HOM05D005604 ORTHO05D006745 5.1e-09 67.0 100 48.0


User provided reference genes

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