Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 5.0e-230 800.8 425 100.0
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 6.8e-118 428.3 445 60.2
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 6.6e-105 385.2 455 56.3
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 2.3e-97 360.1 443 56.9
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 8.0e-95 351.7 444 56.5
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.8e-94 350.5 594 47.6
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 9.8e-93 344.7 592 46.8
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 8.3e-92 341.7 593 47.0
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.1e-91 341.3 593 46.7
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 6.0e-90 335.5 593 46.7
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 3.5e-82 309.7 438 51.6
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 7.8e-82 308.5 439 51.3
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 3.6e-79 299.7 450 52.2
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 1.2e-77 294.7 441 49.2
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 1.5e-77 294.3 473 48.6
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 2.0e-77 293.9 428 48.4
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 5.8e-77 292.4 450 51.1
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 7.6e-77 292.0 466 47.9
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 2.9e-76 290.0 445 48.1
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 4.9e-76 289.3 440 49.1
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 9.6e-72 275.0 453 50.1
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 8.1e-71 271.9 491 44.6
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 3.4e-69 266.5 483 43.5
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 4.4e-69 266.2 447 46.3
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.2e-68 263.8 442 46.2
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 2.9e-68 263.5 450 45.1
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.4e-67 261.2 442 45.5
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.6e-66 257.7 440 44.5
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 7.8e-66 255.4 447 46.3
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 2.1e-63 247.3 444 44.8
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 5.8e-61 239.2 471 43.1
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 7.1e-59 232.3 421 43.7
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 9.3e-59 231.9 439 45.1
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 1.2e-58 231.5 434 44.2
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 8.7e-57 225.3 406 40.9
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 1.9e-56 224.2 422 43.4
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 1.3e-55 221.5 430 41.4
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 2.1e-55 220.7 454 41.9
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 2.1e-55 220.7 454 41.9
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 2.1e-55 220.7 482 40.2
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.8e-54 217.6 439 42.1
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 1.5e-53 214.5 434 39.2
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 4.5e-53 213.0 527 39.5
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 5.5e-51 206.1 429 41.3
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 5.5e-51 206.1 459 42.7
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 1.2e-50 204.9 459 38.1
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 1.2e-50 204.9 442 41.4
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 6.0e-50 202.6 413 38.7
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 7.9e-50 202.2 526 38.4
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.3e-49 200.7 448 40.4
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 7.4e-48 195.7 435 41.6
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 4.8e-47 193.0 446 40.4
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.8e-47 193.0 442 40.3
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 1.4e-46 191.4 446 40.6
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 1.4e-46 191.4 437 39.8
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 3.1e-46 190.3 455 37.4
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 5.8e-45 186.0 435 40.9
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 7.6e-45 185.7 446 39.9
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 1.0e-44 185.3 317 47.6
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 1.3e-44 184.9 446 39.9
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 1.3e-44 184.9 446 39.9
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 1.7e-44 184.5 439 41.5
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.7e-44 184.5 424 39.2
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 1.7e-44 184.5 410 39.0
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 2.2e-44 184.1 472 35.4
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 2.2e-44 184.1 426 38.3
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 1.4e-43 181.4 450 37.6
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 3.2e-43 180.3 439 39.9
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 7.9e-42 175.6 443 38.4
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 1.8e-41 174.5 132 68.9
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 2.5e-40 170.6 425 35.5
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.6e-39 167.9 419 34.4
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 2.2e-39 167.5 331 42.6
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 2.2e-39 167.5 313 41.2
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 2.4e-38 164.1 443 37.5
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.1e-38 163.7 432 35.9
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.1e-38 163.7 432 35.9
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.1e-38 163.3 435 38.6
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 6.9e-38 162.5 430 36.3
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 6.9e-38 162.5 442 36.7
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 6.9e-38 162.5 411 34.1
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 7.7e-37 159.1 415 33.7
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.7e-36 157.9 334 36.8
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 3.8e-36 156.8 432 35.9
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 6.5e-36 156.0 137 65.7
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 1.1e-35 155.2 437 37.1
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.9e-35 154.5 313 39.6
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 3.2e-35 153.7 411 34.3
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 9.4e-35 152.1 484 34.3
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 9.4e-35 152.1 441 38.1
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 1.2e-34 151.8 316 37.7
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 2.7e-34 150.6 447 35.3
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 6.7e-33 146.0 305 39.3
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 1.1e-32 145.2 438 35.6
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 1.1e-32 145.2 360 33.9
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 1.5e-32 144.8 451 34.4
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 2.0e-32 144.4 434 35.9
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 3.3e-32 143.7 416 34.4
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 4.3e-32 143.3 514 31.9
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 4.1e-30 136.7 431 32.5
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 6.9e-30 136.0 391 36.8
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 2.0e-29 134.4 432 34.7
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 2.6e-29 134.0 440 35.9
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 5.9e-29 132.9 465 34.8
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 7.7e-29 132.5 439 33.3
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.7e-28 131.3 434 33.9
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 5.0e-28 129.8 256 39.8
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 2.5e-27 127.5 212 41.5
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 4.7e-26 123.2 126 54.0
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.4e-25 121.7 211 37.4
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 3.9e-25 120.2 333 36.6
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 8.8e-25 119.0 557 30.5
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 4.4e-24 116.7 124 52.4
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 9.7e-24 115.5 406 33.5
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 2.2e-23 114.4 168 42.3
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 3.7e-23 113.6 184 39.1
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 4.1e-22 110.2 419 28.9
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.2e-21 108.6 120 47.5
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 4.5e-21 106.7 120 59.2
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 1.3e-20 105.1 120 46.7
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 5.0e-20 103.2 403 34.5
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 6.5e-20 102.8 498 30.1
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 1.1e-19 102.1 130 46.9
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 2.0e-16 91.3 55 76.4
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 2.6e-16 90.9 106 51.9
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 9.7e-16 89.0 416 29.1
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 1.7e-15 88.2 115 52.2
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 5.9e-13 79.7 145 44.1
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 1.3e-12 78.6 272 32.7
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 2.2e-12 77.8 167 40.1
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 1.2e-08 65.5 135 40.7
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 2.6e-08 64.3 427 23.0
Sed0007907 Sechium edule HOM05D005417 ORTHO05D002591 2.8e-07 60.8 105 44.8
AUR62001135 Chenopodium quinoa HOM05D005417 ORTHO05D002591 3.7e-07 60.5 220 30.5


User provided reference genes

Program Settings