Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G192000 Prunus persica HOM05D006940 ORTHO05D008626 6.5e-60 233.8 113 100.0
RcHm_v2.0_Chr6g0283181 Rosa chinensis HOM05D006940 ORTHO05D008626 3.2e-43 178.3 114 78.9
MD10G1153200 Malus domestica HOM05D006940 ORTHO05D008626 5.5e-43 177.6 112 82.1
MD05G1163400 Malus domestica HOM05D006940 ORTHO05D008626 8.0e-42 173.7 115 79.1
FvH4_2g17950 Fragaria vesca HOM05D006940 ORTHO05D008626 4.0e-41 171.4 114 75.4
FAN15G1530 Fragaria x ananassa HOM05D006940 ORTHO05D008626 4.0e-41 171.4 114 75.4
FAN24G1170 Fragaria x ananassa HOM05D006940 ORTHO05D008626 1.5e-40 169.5 114 74.6
FAN27G2163 Fragaria x ananassa HOM05D006940 ORTHO05D008626 3.7e-39 164.9 114 72.8
Dinv28817 Davidia involucrata HOM05D006940 ORTHO05D008626 6.5e-36 154.1 112 69.6
CSS0001884 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 2.3e-33 145.6 114 64.9
Gohir.A11G141800 Gossypium hirsutum HOM05D006940 ORTHO05D008626 5.7e-32 141.0 103 66.0
Gorai.N003800 Gossypium raimondii HOM05D006940 ORTHO05D008626 9.8e-32 140.2 102 68.6
TAR365G0827 Trochodendron aralioides HOM05D006940 ORTHO05D008626 1.3e-31 139.8 106 66.0
QL09p045850 Quercus lobata HOM05D006940 ORTHO05D008626 2.2e-31 139.0 104 67.3
Thecc.01G212400 Theobroma cacao HOM05D006940 ORTHO05D008626 2.2e-31 139.0 104 69.2
Gohir.D07G166700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 6.3e-31 137.5 102 67.6
Gohir.A07G159700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.1e-30 136.7 102 66.7
Gohir.D11G148100 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.1e-30 136.7 103 65.0
Gorai.007G158800 Gossypium raimondii HOM05D006940 ORTHO05D008626 2.4e-30 135.6 103 64.1
Glyma.18G152800 Glycine max HOM05D006940 ORTHO05D008626 3.1e-30 135.2 112 62.5
Duzib211G0506 Durio zibethinus HOM05D006940 ORTHO05D008626 7.0e-30 134.0 103 65.0
Potri.002G249901 Populus trichocarpa HOM05D006940 ORTHO05D008626 7.0e-30 134.0 104 64.4
Psat0s1437g0080 Pisum sativum HOM05D006940 ORTHO05D008626 9.2e-30 133.7 111 62.2
Duzib133G0939 Durio zibethinus HOM05D006940 ORTHO05D008626 1.2e-29 133.3 103 67.0
Duzib138G0498 Durio zibethinus HOM05D006940 ORTHO05D008626 1.6e-29 132.9 104 66.3
arahy.Tifrunner.gnm1.ann1.ZA5GY6 Arachis hypogaea HOM05D006940 ORTHO05D008626 4.5e-29 131.3 112 62.5
Medtr7g052120 Medicago truncatula HOM05D006940 ORTHO05D008626 4.5e-29 131.3 111 61.3
Atru.chr6.1604 Acer truncatum HOM05D006940 ORTHO05D008626 7.8e-29 130.6 99 65.7
TPR.G26809 Trifolium pratense HOM05D006940 ORTHO05D008626 1.0e-28 130.2 111 62.2
Ciclev10033128m.g Citrus clementina HOM05D006940 ORTHO05D008626 1.3e-28 129.8 106 65.1
Gohir.D07G203400 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.3e-28 129.8 104 67.3
Gorai.001G228900 Gossypium raimondii HOM05D006940 ORTHO05D008626 1.3e-28 129.8 104 67.3
Nn1g08072 Nelumbo nucifera HOM05D006940 ORTHO05D008626 2.3e-28 129.0 106 60.4
Nitab4.5_0000038g0040 Nicotiana tabacum HOM05D006940 ORTHO05D008626 2.9e-28 128.6 111 58.6
Phvul.008G137700 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 5.0e-28 127.9 110 60.9
Glyma.08G345100 Glycine max HOM05D006940 ORTHO05D008626 6.6e-28 127.5 113 59.3
Lj1g0019270 Lotus japonicus HOM05D006940 ORTHO05D008626 6.6e-28 127.5 111 60.4
Lalb_Chr21g0315011 Lupinus albus HOM05D006940 ORTHO05D008626 6.6e-28 127.5 111 59.5
PGR044G1150 Punica granatum HOM05D006940 ORTHO05D008626 8.6e-28 127.1 104 62.5
Rhsim13G0052100 Rhododendron simsii HOM05D006940 ORTHO05D008626 1.1e-27 126.7 105 62.9
CiPaw.13G054100 Carya illinoinensis HOM05D006940 ORTHO05D008626 1.5e-27 126.3 105 61.9
Gohir.A07G197033 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.9e-27 125.9 104 66.3
Manes.12G052500 Manihot esculenta HOM05D006940 ORTHO05D008626 1.9e-27 125.9 104 62.5
CSS0043498 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 3.3e-27 125.2 112 58.0
Eucgr.K02098 Eucalyptus grandis HOM05D006940 ORTHO05D008626 4.3e-27 124.8 110 60.9
MELO3C021111.2 Cucumis melo HOM05D006940 ORTHO05D008626 5.6e-27 124.4 104 63.5
Lalb_Chr03g0041181 Lupinus albus HOM05D006940 ORTHO05D008626 5.6e-27 124.4 111 55.0
CsaV3_7G026610 Cucumis sativus L. HOM05D006940 ORTHO05D008626 1.6e-26 122.9 100 59.0
Nitab4.5_0003186g0010 Nicotiana tabacum HOM05D006940 ORTHO05D008626 1.6e-26 122.9 109 57.8
CiPaw.14G043100 Carya illinoinensis HOM05D006940 ORTHO05D008626 2.1e-26 122.5 105 61.0
PGSC0003DMG400007740 Solanum tuberosum HOM05D006940 ORTHO05D008626 3.6e-26 121.7 109 57.8
TWI36G1176 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 4.7e-26 121.3 106 57.5
arahy.Tifrunner.gnm1.ann1.7YS827 Arachis hypogaea HOM05D006940 ORTHO05D008626 1.8e-25 119.4 107 60.7
Haze_03308 Corylus avellana HOM05D006940 ORTHO05D008626 1.8e-25 119.4 80 67.5
CANSAT01G0416 Cannabis sativa HOM05D006940 ORTHO05D008626 2.3e-25 119.0 115 56.5
CANSAT01G0831 Cannabis sativa HOM05D006940 ORTHO05D008626 2.3e-25 119.0 115 56.5
CANSAT01G1056 Cannabis sativa HOM05D006940 ORTHO05D008626 2.3e-25 119.0 115 56.5
Aa31sc38G90 Aethionema arabicum HOM05D006940 ORTHO05D008626 8.9e-25 117.1 108 56.5
TWI75G1309 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 1.2e-24 116.7 104 54.8
Sabra02G0190300 Salix brachista HOM05D006940 ORTHO05D008626 2.0e-24 115.9 90 61.1
PSO675G0779 Papaver somniferum HOM05D006940 ORTHO05D008626 2.6e-24 115.5 121 52.9
VMungo0331G0069 Vigna mungo HOM05D006940 ORTHO05D008626 2.6e-24 115.5 106 55.7
Cpa.g.sc8.85 Carica papaya HOM05D006940 ORTHO05D008626 4.4e-24 114.8 97 56.7
Sopen08g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 4.4e-24 114.8 105 57.1
Hma1.2p1_0781F.1_g216880 Hydrangea macrophylla HOM05D006940 ORTHO05D008626 5.7e-24 114.4 59 84.7
AL9U11560 Arabidopsis lyrata HOM05D006940 ORTHO05D008626 7.5e-24 114.0 104 54.8
Nn7g37664 Nelumbo nucifera HOM05D006940 ORTHO05D008626 7.5e-24 114.0 107 54.2
Sp7g09835 Schrenkiella parvula HOM05D006940 ORTHO05D008626 7.5e-24 114.0 104 58.7
BcaB04g17733 Brassica carinata HOM05D006940 ORTHO05D008626 9.8e-24 113.6 65 75.4
A08p07220 Brassica napus HOM05D006940 ORTHO05D008626 9.8e-24 113.6 65 75.4
C08p08940 Brassica napus HOM05D006940 ORTHO05D008626 9.8e-24 113.6 65 75.4
BolC8t47738H Brassica oleracea HOM05D006940 ORTHO05D008626 9.8e-24 113.6 65 75.4
BraA08t32735Z Brassica rapa HOM05D006940 ORTHO05D008626 9.8e-24 113.6 65 75.4
DCAR_012690 Daucus carota HOM05D000328 ORTHO05D008626 9.8e-24 113.6 76 67.1
Manes.13G053500 Manihot esculenta HOM05D006940 ORTHO05D008626 9.8e-24 113.6 89 65.2
PSO017G0530 Papaver somniferum HOM05D006940 ORTHO05D008626 9.8e-24 113.6 121 52.1
HanXRQChr08g0231211 Helianthus annuus HOM05D006940 ORTHO05D008626 1.3e-23 113.2 105 59.0
Solyc08g066610.3 Solanum lycopersicum HOM05D006940 ORTHO05D008626 1.3e-23 113.2 109 54.1
AT4G12970 Arabidopsis thaliana HOM05D006940 ORTHO05D008626 1.7e-23 112.8 104 56.7
CARHR218280 Cardamine hirsuta HOM05D006940 ORTHO05D008626 1.7e-23 112.8 107 55.1
vmacro02811 Vaccinium macrocarpon HOM05D006940 ORTHO05D008626 1.7e-23 112.8 50 92.0
Sed0027137 Sechium edule HOM05D006940 ORTHO05D008626 2.2e-23 112.5 115 48.7
Carub.0007s2980 Capsella rubella HOM05D006940 ORTHO05D008626 3.7e-23 111.7 104 53.8
COL.COLO4_06154 Corchorus olitorius HOM05D006940 ORTHO05D008626 3.7e-23 111.7 79 67.1
Phvul.010G031000 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 3.7e-23 111.7 113 47.8
Migut.D02467 Erythranthe guttata HOM05D006940 ORTHO05D008626 4.9e-23 111.3 107 59.8
Thhalv10026516m.g Eutrema salsugineum HOM05D006940 ORTHO05D008626 4.9e-23 111.3 104 55.8
Sopen09g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 4.9e-23 111.3 105 56.2
Sed0013755 Sechium edule HOM05D006940 ORTHO05D008626 6.4e-23 110.9 63 74.6
MSTRG.20995 Avicennia marina HOM05D006940 ORTHO05D008626 1.4e-22 109.8 109 54.1
Os01g0914400 Oryza sativa ssp. japonica HOM05D006940 ORTHO05D008626 1.4e-22 109.8 115 47.0
SalBow7G1139 Salvia bowleyana HOM05D006940 ORTHO05D008626 1.4e-22 109.8 50 90.0
MBI07_g41210_MAGBIO Magnolia biondii HOM05D006940 ORTHO05D008626 1.8e-22 109.4 117 48.7
SalBow6G3514 Salvia bowleyana HOM05D006940 ORTHO05D008626 1.8e-22 109.4 107 57.0
MSTRG.18810 Avicennia marina HOM05D006940 ORTHO05D008626 3.2e-22 108.6 106 53.8
Psat0s4060g0200 Pisum sativum HOM05D006940 ORTHO05D008626 3.2e-22 108.6 109 56.0
TPR.G2024 Trifolium pratense HOM05D006940 ORTHO05D008626 5.4e-22 107.8 70 71.4
Oeu064661.1 Olea europaea HOM05D006940 ORTHO05D008626 7.0e-22 107.5 106 54.7
TAR636G0441 Trochodendron aralioides HOM05D006940 ORTHO05D008626 1.2e-21 106.7 86 65.1
Lsat_1_v5_gn_9_16040 Lactuca sativa HOM05D006940 ORTHO05D008626 2.0e-21 105.9 90 57.8
Sc01g0005680 Simmondsia chinensis HOM05D006940 ORTHO05D008626 2.7e-21 105.5 103 51.5
THA.LOC104818992 Tarenaya hassleriana HOM05D006940 ORTHO05D008626 3.5e-21 105.1 104 54.8
Zm00001eb364920 Zea mays HOM05D006940 ORTHO05D008626 7.8e-21 104.0 52 78.8
EL10Ac5g11605 Beta vulgaris HOM05D006940 ORTHO05D008626 1.3e-20 103.2 50 78.0
GSVIVG01031691001 Vitis vinifera HOM05D006940 ORTHO05D008626 1.3e-20 103.2 47 85.1
Lsat_1_v5_gn_8_97920 Lactuca sativa HOM05D006940 ORTHO05D008626 1.7e-20 102.8 50 84.0
Zm00001eb143570 Zea mays HOM05D006940 ORTHO05D008626 3.9e-20 101.7 107 47.7
HanXRQChr16g0507861 Helianthus annuus HOM05D006940 ORTHO05D008626 5.0e-20 101.3 54 79.6
ATR0609G114 Amborella trichopoda HOM05D006940 ORTHO05D008626 1.1e-19 100.1 50 84.0
SEGI_36325 Sequoiadendron giganteum HOM05D006940 ORTHO05D008626 4.7e-18 94.7 116 43.1
MSTRG.12756 Avicennia marina HOM05D006940 ORTHO05D008626 6.2e-18 94.4 47 78.7
HPP92_011792 Vanilla planifolia HOM05D006940 ORTHO05D008626 6.8e-17 90.9 106 45.3
AUR62042875 Chenopodium quinoa HOM05D006940 ORTHO05D008626 2.6e-16 89.0 43 74.4
PGSC0003DMG400020111 Solanum tuberosum HOM05D006940 ORTHO05D008626 3.7e-15 85.1 50 74.0
Zm00001eb174960 Zea mays HOM05D006940 ORTHO05D008626 3.7e-15 85.1 49 65.3
SMO351G0191 Selaginella moellendorffii HOM05D006940 ORTHO05D008626 5.4e-14 81.3 49 65.3


User provided reference genes

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