Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G190400 Prunus persica HOM05D004226 ORTHO05D004842 1.1e-87 326.6 169 100.0
CiPaw.13G055300 Carya illinoinensis HOM05D004226 ORTHO05D004842 7.5e-36 154.5 166 54.8
Duzib138G1045 Durio zibethinus HOM05D004226 ORTHO05D004842 9.8e-36 154.1 164 57.9
Phvul.008G136900 Phaseolus vulgaris HOM05D004226 ORTHO05D004842 2.2e-35 152.9 164 53.0
Gohir.A11G142500 Gossypium hirsutum HOM05D004226 ORTHO05D004842 3.7e-35 152.1 164 54.3
Gorai.007G159600 Gossypium raimondii HOM05D004226 ORTHO05D004842 3.7e-35 152.1 164 53.7
Gohir.D11G148800 Gossypium hirsutum HOM05D004226 ORTHO05D004842 4.9e-35 151.8 164 54.3
Eucgr.H00726 Eucalyptus grandis HOM05D004226 ORTHO05D004842 1.4e-34 150.2 163 54.6
Manes.12G054100 Manihot esculenta HOM05D004226 ORTHO05D004842 2.4e-34 149.4 166 55.4
Actinidia23795 Actinidia chinensis HOM05D004226 ORTHO05D004842 3.1e-34 149.1 164 51.2
VMungo1383G2422 Vigna mungo HOM05D004226 ORTHO05D004842 3.1e-34 149.1 164 53.0
PGR083G1064 Punica granatum HOM05D004226 ORTHO05D004842 7.0e-34 147.9 169 54.4
Dinv28812 Davidia involucrata HOM05D004226 ORTHO05D004842 1.2e-33 147.1 165 52.1
Glyma.18G152900 Glycine max HOM05D004226 ORTHO05D004842 5.9e-33 144.8 164 50.0
TWI36G1598 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 5.9e-33 144.8 172 52.9
Lalb_Chr03g0041091 Lupinus albus HOM05D004226 ORTHO05D004842 7.8e-33 144.4 166 50.0
Dinv10439 Davidia involucrata HOM05D004226 ORTHO05D004842 1.0e-32 144.1 162 51.9
Lalb_Chr01g0021991 Lupinus albus HOM05D004226 ORTHO05D004842 1.0e-32 144.1 161 51.6
TAR365G1191 Trochodendron aralioides HOM05D004226 ORTHO05D004842 1.0e-32 144.1 165 53.9
CANSAT01G0104 Cannabis sativa HOM05D004226 ORTHO05D004842 2.9e-32 142.5 170 52.4
Duzib133G0243 Durio zibethinus HOM05D004226 ORTHO05D004842 3.9e-32 142.1 164 54.9
Haze_03501 Corylus avellana HOM05D004226 ORTHO05D004842 5.0e-32 141.7 156 55.1
MD10G1152100 Malus domestica HOM05D004226 ORTHO05D004842 8.6e-32 141.0 177 48.6
MD05G1159600 Malus domestica HOM05D004226 ORTHO05D004842 1.1e-31 140.6 180 48.9
Psat3g151000 Pisum sativum HOM05D004226 ORTHO05D004842 1.1e-31 140.6 158 51.3
vmacro02815 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 1.1e-31 140.6 161 52.2
Potri.002G251200 Populus trichocarpa HOM05D004226 ORTHO05D004842 3.3e-31 139.0 167 52.1
Cfa010569 Carpinus fangiana HOM05D004226 ORTHO05D004842 4.3e-31 138.7 156 54.5
Hund02794 Selenicereus undatus HOM05D004226 ORTHO05D004842 4.3e-31 138.7 165 52.1
TAR362G0792 Trochodendron aralioides HOM05D004226 ORTHO05D004842 4.3e-31 138.7 153 55.6
DCAR_004767 Daucus carota HOM05D004226 ORTHO05D004842 9.5e-31 137.5 168 47.6
EL10Ac5g10626 Beta vulgaris HOM05D004226 ORTHO05D004842 2.1e-30 136.3 160 53.1
MSTRG.18494 Avicennia marina HOM05D004226 ORTHO05D004842 2.8e-30 136.0 158 53.2
Lsat_1_v5_gn_8_98041 Lactuca sativa HOM05D004226 ORTHO05D004842 2.8e-30 136.0 154 51.3
TWI18G1341 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 2.8e-30 136.0 164 50.0
Ah.11g051030 Amaranthus hybridus HOM05D004226 ORTHO05D004842 3.6e-30 135.6 163 52.8
Cpa.g.sc8.73 Carica papaya HOM05D004226 ORTHO05D004842 4.7e-30 135.2 162 50.6
Migut.N00664 Erythranthe guttata HOM05D004226 ORTHO05D004842 6.1e-30 134.8 148 54.1
QL09p046251 Quercus lobata HOM05D004226 ORTHO05D004842 8.0e-30 134.4 174 48.9
Sabra02G0191000 Salix brachista HOM05D004226 ORTHO05D004842 8.0e-30 134.4 191 47.1
Glyma.08G344200 Glycine max HOM05D004226 ORTHO05D004842 1.0e-29 134.0 166 48.8
Hma1.2p1_0781F.1_g216920 Hydrangea macrophylla HOM05D004226 ORTHO05D004842 1.0e-29 134.0 175 50.3
ClCG05G015470 Citrullus lanatus HOM05D004226 ORTHO05D004842 1.4e-29 133.7 164 50.0
Oeu003656.1 Olea europaea HOM05D004226 ORTHO05D004842 1.4e-29 133.7 156 50.0
CSS0019192 Camellia sinensis var. sinensis HOM05D004226 ORTHO05D004842 1.8e-29 133.3 127 55.9
Actinidia30018 Actinidia chinensis HOM05D004226 ORTHO05D004842 2.3e-29 132.9 161 50.9
TAR633G1997 Trochodendron aralioides HOM05D004226 ORTHO05D004842 2.3e-29 132.9 172 50.6
Aqoxy2G03959 Aquilegia oxysepala HOM05D004226 ORTHO05D004842 5.2e-29 131.7 158 49.4
Actinidia34543 Actinidia chinensis HOM05D004226 ORTHO05D004842 6.8e-29 131.3 164 47.0
vmacro14692 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 6.8e-29 131.3 160 50.6
Thecc.01G211100 Theobroma cacao HOM05D004226 ORTHO05D004842 8.9e-29 131.0 164 51.2
Rhsim13G0052600 Rhododendron simsii HOM05D004226 ORTHO05D004842 1.2e-28 130.6 170 48.8
THA.LOC104802646 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 1.2e-28 130.6 166 50.0
DCAR_012646 Daucus carota HOM05D004226 ORTHO05D004842 1.5e-28 130.2 169 50.3
HanXRQChr16g0507911 Helianthus annuus HOM05D004226 ORTHO05D004842 2.0e-28 129.8 149 51.0
ECA247G2547 Erigeron canadensis HOM05D004226 ORTHO05D004842 2.6e-28 129.4 132 53.0
Nitab4.5_0000038g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 2.6e-28 129.4 160 52.5
Ciclev10016998m.g Citrus clementina HOM05D004226 ORTHO05D004842 4.4e-28 128.6 163 50.3
Lj1g0015941 Lotus japonicus HOM05D004226 ORTHO05D004842 4.4e-28 128.6 176 51.1
Lj2A1117T18 Lonicera japonica HOM05D004226 ORTHO05D004842 5.8e-28 128.3 164 47.6
DCAR_018624 Daucus carota HOM05D004226 ORTHO05D004842 7.5e-28 127.9 164 45.7
MELO3C003732.2 Cucumis melo HOM05D004226 ORTHO05D004842 9.8e-28 127.5 168 48.8
Hund09468 Selenicereus undatus HOM05D004226 ORTHO05D004842 9.8e-28 127.5 169 46.2
ECA236G1737 Erigeron canadensis HOM05D004226 ORTHO05D004842 1.7e-27 126.7 163 49.7
Nitab4.5_0009151g0020 Nicotiana tabacum HOM05D004226 ORTHO05D004842 1.7e-27 126.7 160 51.9
Rhsim01G0248500 Rhododendron simsii HOM05D004226 ORTHO05D004842 2.2e-27 126.3 164 49.4
AUR62008122 Chenopodium quinoa HOM05D004226 ORTHO05D004842 4.9e-27 125.2 163 47.9
Cc01_g16140 Coffea canephora HOM05D004226 ORTHO05D004842 4.9e-27 125.2 167 48.5
HanXRQChr09g0257641 Helianthus annuus HOM05D004226 ORTHO05D004842 4.9e-27 125.2 144 51.4
Nn1g08255 Nelumbo nucifera HOM05D004226 ORTHO05D004842 4.9e-27 125.2 179 45.8
HanXRQChr08g0231431 Helianthus annuus HOM05D004226 ORTHO05D004842 1.1e-26 124.0 162 48.1
ATR0686G035 Amborella trichopoda HOM05D004226 ORTHO05D004842 2.4e-26 122.9 162 46.9
CsaV3_3G046080 Cucumis sativus L. HOM05D004226 ORTHO05D004842 4.1e-26 122.1 163 46.6
BolC7t44438H Brassica oleracea HOM05D004226 ORTHO05D004842 7.0e-26 121.3 167 46.1
Peaxi162Scf00372g00004 Petunia axillaris HOM05D004226 ORTHO05D004842 7.0e-26 121.3 162 49.4
THA.LOC104822467 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 1.2e-25 120.6 164 45.1
Aa31sc186G10 Aethionema arabicum HOM05D004226 ORTHO05D004842 1.6e-25 120.2 165 46.1
AUR62028700 Chenopodium quinoa HOM05D004226 ORTHO05D004842 2.0e-25 119.8 161 47.2
TPR.G26804 Trifolium pratense HOM05D004226 ORTHO05D004842 2.7e-25 119.4 166 46.4
COL.COLO4_26572 Corchorus olitorius HOM05D004226 ORTHO05D004842 6.0e-25 118.2 166 48.8
HPP92_024259 Vanilla planifolia HOM05D004226 ORTHO05D004842 6.0e-25 118.2 158 47.5
SEGI_00481 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 7.8e-25 117.9 174 43.1
SGA_v2.0_scaffold624G53238 Striga asiatica HOM05D004226 ORTHO05D004842 1.3e-24 117.1 155 47.1
Sp2g18850 Schrenkiella parvula HOM05D004226 ORTHO05D004842 1.7e-24 116.7 169 45.6
PGSC0003DMG400027348 Solanum tuberosum HOM05D004226 ORTHO05D004842 1.7e-24 116.7 157 48.4
Oeu057834.2 Olea europaea HOM05D000039 ORTHO05D005440 2.3e-24 116.3 143 51.0
Sc17g0001670 Simmondsia chinensis HOM05D004226 ORTHO05D004842 3.0e-24 115.9 133 48.1
A06p39150 Brassica napus HOM05D004226 ORTHO05D004842 6.6e-24 114.8 172 45.9
C07p39180 Brassica napus HOM05D004226 ORTHO05D004842 6.6e-24 114.8 173 45.1
Sopen11g003480 Solanum pennellii HOM05D004226 ORTHO05D004842 1.1e-23 114.0 157 47.8
C09p04850 Brassica napus HOM05D004226 ORTHO05D004842 1.5e-23 113.6 172 45.3
Thhalv10005050m.g Eutrema salsugineum HOM05D004226 ORTHO05D004842 1.9e-23 113.2 163 46.0
Sed0006210 Sechium edule HOM05D004226 ORTHO05D004842 1.9e-23 113.2 167 45.5
MSTRG.21303 Avicennia marina HOM05D004226 ORTHO05D004842 2.5e-23 112.8 158 45.6
BolC2t11714H Brassica oleracea HOM05D004226 ORTHO05D004842 2.5e-23 112.8 165 45.5
BraA06t26830Z Brassica rapa HOM05D004226 ORTHO05D004842 2.5e-23 112.8 172 45.3
Medtr7g052690 Medicago truncatula HOM05D004226 ORTHO05D004842 2.5e-23 112.8 167 44.3
BcaC06g30793 Brassica carinata HOM05D004226 ORTHO05D004842 4.3e-23 112.1 169 45.0
C02p56560 Brassica napus HOM05D004226 ORTHO05D004842 4.3e-23 112.1 165 45.5
BcaC03g17654 Brassica carinata HOM05D004226 ORTHO05D004842 7.3e-23 111.3 165 44.8
A09p04540 Brassica napus HOM05D004226 ORTHO05D004842 9.5e-23 110.9 170 45.3
BraA09t36089Z Brassica rapa HOM05D004226 ORTHO05D004842 9.5e-23 110.9 170 45.3
SGA_v2.0_scaffold8G04494 Striga asiatica HOM05D004226 ORTHO05D004842 9.5e-23 110.9 157 45.9
BcaC04g23773 Brassica carinata HOM05D004226 ORTHO05D004842 2.1e-22 109.8 172 43.6
BolC9t53412H Brassica oleracea HOM05D004226 ORTHO05D004842 3.6e-22 109.0 167 44.9
Lj3g0009756 Lotus japonicus HOM05D004226 ORTHO05D004842 3.6e-22 109.0 151 46.4
Gohir.D07G094900 Gossypium hirsutum HOM05D004226 ORTHO05D004842 8.0e-22 107.8 165 46.7
Gorai.001G102200 Gossypium raimondii HOM05D004226 ORTHO05D004842 8.0e-22 107.8 165 46.7
SGA_v2.0_scaffold29G12070 Striga asiatica HOM05D004226 ORTHO05D004842 8.0e-22 107.8 185 41.6
Nitab4.5_0002311g0050 Nicotiana tabacum HOM05D004226 ORTHO05D004842 2.3e-21 106.3 172 45.9
CAN.G181.39 Capsicum annuum HOM05D004226 ORTHO05D004842 3.1e-21 105.9 136 47.1
BraA02t08736Z Brassica rapa HOM05D004226 ORTHO05D004842 5.2e-21 105.1 166 43.4
Gohir.A07G090200 Gossypium hirsutum HOM05D004226 ORTHO05D004842 5.2e-21 105.1 165 45.5
A02p37490 Brassica napus HOM05D004226 ORTHO05D004842 6.8e-21 104.8 166 43.4
Sopen06g002500 Solanum pennellii HOM05D004226 ORTHO05D004842 6.8e-21 104.8 159 44.0
Carub.0008s0806 Capsella rubella HOM05D004226 ORTHO05D004842 8.9e-21 104.4 181 42.0
PGSC0003DMG400020653 Solanum tuberosum HOM05D004226 ORTHO05D004842 8.9e-21 104.4 159 47.2
PSO017G4362 Papaver somniferum HOM05D004226 ORTHO05D004842 1.2e-20 104.0 167 41.9
PSO675G4654 Papaver somniferum HOM05D004226 ORTHO05D004842 1.5e-20 103.6 167 41.9
Mapoly0001s0501 Marchantia polymorpha HOM05D004226 ORTHO05D004842 2.0e-20 103.2 158 39.9
Ca_07469_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 2.6e-20 102.8 91 59.3
Ca_30573_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 2.6e-20 102.8 91 59.3
Solyc06g007610.2 Solanum lycopersicum HOM05D004226 ORTHO05D004842 5.8e-20 101.7 159 43.4
RcHm_v2.0_Chr6g0282841 Rosa chinensis HOM05D004226 ORTHO05D004842 7.5e-20 101.3 168 44.0
Nitab4.5_0002167g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 2.2e-19 99.8 167 46.7
Migut.D00735 Erythranthe guttata HOM05D004226 ORTHO05D004842 8.3e-19 97.8 124 46.8
SMO146G0354 Selaginella moellendorffii HOM05D004226 ORTHO05D004842 1.4e-18 97.1 124 45.2
FAN15G3314 Fragaria x ananassa HOM05D004226 ORTHO05D004842 1.9e-18 96.7 169 40.2
Lj3g0001126 Lotus japonicus HOM05D004226 ORTHO05D004842 1.9e-18 96.7 153 40.5
THA.LOC104818997 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 1.9e-18 96.7 162 43.2
CDE05G1161 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 2.4e-18 96.3 153 41.8
FAN24G0678 Fragaria x ananassa HOM05D004226 ORTHO05D004842 2.4e-18 96.3 171 39.8
FvH4_2g17810 Fragaria vesca HOM05D004226 ORTHO05D004842 4.1e-18 95.5 171 39.8
Duzib168G0485 Durio zibethinus HOM05D004226 ORTHO05D004842 2.1e-17 93.2 134 47.8
Migut.D00732 Erythranthe guttata HOM05D004226 ORTHO05D004842 2.1e-17 93.2 125 45.6
FAN27G2858 Fragaria x ananassa HOM05D004226 ORTHO05D004842 7.8e-17 91.3 154 39.6
FAN27G3147 Fragaria x ananassa HOM05D004226 ORTHO05D004842 7.8e-17 91.3 154 39.6
AT5G48480 Arabidopsis thaliana HOM05D004226 ORTHO05D004842 1.7e-16 90.1 160 41.9
AL8G21330 Arabidopsis lyrata HOM05D004226 ORTHO05D004842 3.0e-16 89.4 173 39.3
BcaB07g30025 Brassica carinata HOM05D004226 ORTHO05D004842 5.1e-16 88.6 159 40.3
SHI10249 Sapria himalayana HOM05D004226 ORTHO05D004842 5.1e-16 88.6 138 44.2
CARHR183600 Cardamine hirsuta HOM05D004226 ORTHO05D004842 1.1e-15 87.4 156 39.7
CDE05G0628 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 5.6e-15 85.1 132 43.9
Atru.chr6.3547 Acer truncatum HOM05D004226 ORTHO05D004842 1.2e-14 84.0 130 43.8
BcaB07g30020 Brassica carinata HOM05D004226 ORTHO05D004842 6.2e-14 81.6 106 50.9
Lj2P1154T27 Lonicera japonica HOM05D004226 ORTHO05D004842 6.2e-14 81.6 76 57.9
Duzib205G0826 Durio zibethinus HOM05D004226 ORTHO05D004842 8.1e-14 81.3 145 41.4
Cfa011865 Carpinus fangiana HOM05D004226 ORTHO05D004842 7.5e-12 74.7 77 57.1
Psat0s337g0040 Pisum sativum HOM05D004226 ORTHO05D004842 9.9e-12 74.3 93 45.2
Duzib170G0075 Durio zibethinus HOM05D004226 ORTHO05D004842 1.7e-11 73.6 136 42.6
Duzib138G0271 Durio zibethinus HOM05D004226 ORTHO05D004842 4.9e-11 72.0 124 39.5
Sc19g0005500 Simmondsia chinensis HOM05D004226 ORTHO05D004842 1.4e-10 70.5 62 54.8
Duzib211G0475 Durio zibethinus HOM05D004226 ORTHO05D004842 7.1e-10 68.2 138 39.1
Pp3c13_5750 Physcomitrium patens HOM05D004226 ORTHO05D004842 1.6e-09 67.0 137 32.8
BcaC06g31007 Brassica carinata HOM05D004226 ORTHO05D004842 6.6e-08 61.6 162 36.4
unitig_0.g1219 Utricularia gibba HOM05D004226 ORTHO05D004842 1.5e-07 60.5 71 47.9
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 1.9e-07 60.1 66 50.0
Medtr8g011510 Medicago truncatula HOM05D004226 ORTHO05D004842 9.5e-07 57.8 134 32.8


User provided reference genes

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