Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 4.7e-112 407.9 212 100.0
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 5.1e-50 201.8 154 72.7
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 4.7e-43 178.7 175 66.9
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 5.5e-36 155.2 156 60.3
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 9.4e-36 154.5 165 57.0
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.6e-35 152.5 166 56.0
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 8.8e-34 147.9 165 54.5
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.8e-34 147.9 165 54.5
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 2.4e-31 139.8 165 57.6
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 7.0e-31 138.3 150 56.0
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 9.1e-31 137.9 159 55.3
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 3.8e-29 132.5 155 54.2
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 8.0e-27 124.8 159 47.2
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 8.8e-26 121.3 145 49.0
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 1.2e-25 120.9 152 51.3
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.2e-25 120.9 157 49.0
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 2.0e-25 120.2 160 45.6
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 2.6e-25 119.8 157 48.4
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 3.4e-25 119.4 157 49.0
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 3.4e-25 119.4 144 45.8
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 5.7e-25 118.6 169 45.6
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 5.7e-25 118.6 163 46.6
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 7.5e-25 118.2 140 47.1
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 1.3e-24 117.5 164 46.3
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 2.8e-24 116.3 154 48.7
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 2.8e-24 116.3 154 48.7
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 6.3e-24 115.2 167 46.7
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 6.3e-24 115.2 145 49.7
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 8.3e-24 114.8 152 48.7
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 3.1e-23 112.8 159 46.5
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 4.1e-23 112.5 160 45.6
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 5.4e-23 112.1 142 51.4
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 7.0e-23 111.7 149 48.3
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 9.1e-23 111.3 160 45.0
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 2.0e-22 110.2 150 49.3
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 2.7e-22 109.8 158 43.7
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 4.5e-22 109.0 143 49.7
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.9e-22 108.6 160 45.0
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 7.7e-22 108.2 159 48.4
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 1.3e-21 107.5 143 43.4
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 1.3e-21 107.5 160 43.8
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 2.9e-21 106.3 168 45.2
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 5.0e-21 105.5 140 45.7
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 5.0e-21 105.5 150 46.7
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 6.5e-21 105.1 140 46.4
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 8.5e-21 104.8 162 41.4
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 1.9e-20 103.6 138 47.1
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 1.9e-20 103.6 154 43.5
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 1.9e-20 103.6 151 45.7
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 9.4e-20 101.3 157 48.4
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 1.2e-19 100.9 151 39.7
Dinv10443 Davidia involucrata HOM05D005211 ORTHO05D006148 4.7e-19 99.0 162 45.7
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 6.1e-19 98.6 152 43.4
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 1.8e-18 97.1 139 43.9
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 3.0e-18 96.3 151 37.1
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 4.0e-18 95.9 141 42.6
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 5.2e-18 95.5 151 46.4
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 8.8e-18 94.7 139 43.2
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.5e-17 94.0 139 42.4
Ciclev10016996m.g Citrus clementina HOM05D005211 ORTHO05D006148 2.0e-17 93.6 161 46.6
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.4e-17 92.4 136 43.4
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 4.4e-17 92.4 145 42.8
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 5.7e-17 92.0 113 50.4
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 9.8e-17 91.3 136 41.9
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 1.3e-16 90.9 145 42.1
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 1.3e-16 90.9 139 43.2
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.2e-16 90.1 168 36.9
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 2.2e-16 90.1 140 41.4
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 2.8e-16 89.7 152 42.1
QL10p006175 Quercus lobata HOM05D000022 ORTHO05D006148 3.7e-16 89.4 82 62.2
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 4.9e-16 89.0 154 42.2
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 4.9e-16 89.0 150 36.7
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 8.3e-16 88.2 141 44.7
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 1.4e-15 87.4 144 40.3
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 2.4e-15 86.7 140 42.1
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 2.4e-15 86.7 151 39.1
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 3.1e-15 86.3 138 39.1
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 5.4e-15 85.5 168 39.9
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 7.0e-15 85.1 151 42.4
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 9.2e-15 84.7 149 40.9
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 1.6e-14 84.0 155 40.6
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 2.0e-14 83.6 138 42.0
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 3.5e-14 82.8 141 39.7
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 4.5e-14 82.4 151 36.4
Gohir.A07G159000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 4.5e-14 82.4 150 39.3
Gorai.N002800 Gossypium raimondii HOM05D005211 ORTHO05D006148 4.5e-14 82.4 150 39.3
Nitab4.5_0004516g0010 Nicotiana tabacum HOM05D005211 ORTHO05D006148 7.7e-14 81.6 91 53.8
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 7.7e-14 81.6 153 39.2
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 1.0e-13 81.3 120 43.3
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 2.9e-13 79.7 98 46.9
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 3.8e-13 79.3 153 37.9
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 5.0e-13 79.0 99 48.5
Atru.chr6.3543 Acer truncatum HOM05D005211 ORTHO05D006148 6.6e-13 78.6 151 40.4
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 6.6e-13 78.6 140 40.7
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 6.6e-13 78.6 91 45.1
Peaxi162Scf00335g00067 Petunia axillaris HOM05D005211 ORTHO05D006148 1.1e-12 77.8 93 50.5
FAN15G2376 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.9e-12 77.0 100 44.0
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 2.5e-12 76.6 104 47.1
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 3.3e-12 76.3 165 34.5
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 5.6e-12 75.5 148 36.5
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 7.3e-12 75.1 138 39.1
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 9.5e-12 74.7 147 35.4
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.2e-11 74.3 99 47.5
Ah.11g050990 Amaranthus hybridus HOM05D005211 ORTHO05D006148 1.6e-11 73.9 121 42.1
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 1.6e-11 73.9 145 34.5
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 2.8e-11 73.2 146 31.5
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 4.7e-11 72.4 162 35.2
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 4.7e-11 72.4 139 36.0
MSTRG.18497 Avicennia marina HOM05D005211 ORTHO05D006148 8.0e-11 71.6 149 40.9
ECA247G2119 Erigeron canadensis HOM05D005211 ORTHO05D006148 2.3e-10 70.1 103 43.7
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 3.0e-10 69.7 152 36.2
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 3.0e-10 69.7 144 39.6
Solyc12g042010.1 Solanum lycopersicum HOM05D005211 ORTHO05D006148 1.5e-09 67.4 137 36.5
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 1.5e-09 67.4 130 40.8
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 2.0e-09 67.0 147 32.7
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 5.7e-09 65.5 143 35.0
Oeu049588.1 Olea europaea HOM05D005211 ORTHO05D006148 5.7e-09 65.5 91 44.0
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 1.7e-08 63.9 127 32.3
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 1.7e-08 63.9 137 35.0
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 2.2e-08 63.5 137 35.8
Sopen09g012960 Solanum pennellii HOM05D005211 ORTHO05D006148 2.9e-08 63.2 99 42.4
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 2.9e-08 63.2 148 36.5
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 1.1e-07 61.2 138 37.7
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 1.4e-07 60.8 142 35.9
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 2.4e-07 60.1 137 34.3
A05p03550 Brassica napus HOM05D005211 ORTHO05D006148 3.2e-07 59.7 137 38.0
BraA05t19341Z Brassica rapa HOM05D005211 ORTHO05D006148 3.2e-07 59.7 137 38.0
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 4.1e-07 59.3 137 35.8
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 4.1e-07 59.3 137 35.8
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 7.0e-07 58.5 138 36.2
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 7.0e-07 58.5 137 33.6
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 2.7e-06 56.6 137 33.6
BNapus_Darmor_BZH_scaffold_64p00090 Brassica napus HOM05D005211 ORTHO05D006148 3.5e-06 56.2 137 33.6
BraA04t18707Z Brassica rapa HOM05D005211 ORTHO05D006148 3.5e-06 56.2 137 33.6
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 7.8e-06 55.1 137 32.1
Dinv44235 Davidia involucrata HOM05D005211 ORTHO05D006148 7.8e-06 55.1 77 48.1


User provided reference genes

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