Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 3.1e-130 468.8 243 100.0
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 3.3e-92 342.4 228 77.6
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 3.7e-91 339.0 228 77.6
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 8.5e-72 274.6 230 64.3
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 5.5e-71 271.9 228 64.9
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 1.2e-70 270.8 228 65.4
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 7.9e-70 268.1 228 63.6
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 1.0e-69 267.7 227 65.2
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 1.1e-68 264.2 229 62.4
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 4.4e-68 262.3 228 62.3
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 1.8e-66 256.9 233 59.7
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 3.1e-66 256.1 228 61.0
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 6.9e-66 255.0 230 63.0
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 7.7e-65 251.5 226 59.3
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 1.0e-64 251.1 227 62.1
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 1.7e-64 250.4 236 57.6
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 3.8e-64 249.2 232 56.9
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 8.5e-64 248.1 230 60.0
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 8.5e-64 248.1 242 57.0
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 1.1e-63 247.7 227 58.6
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 1.1e-63 247.7 229 55.9
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 1.9e-63 246.9 228 58.8
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.9e-63 246.9 227 59.5
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 3.2e-63 246.1 232 59.1
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 4.2e-63 245.7 227 59.5
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 4.2e-63 245.7 227 59.9
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 4.2e-63 245.7 211 60.7
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 5.5e-63 245.4 229 59.4
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.5e-63 245.4 227 59.9
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.5e-63 245.4 227 59.9
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.5e-63 245.4 227 59.9
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 7.2e-63 245.0 199 64.8
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 7.2e-63 245.0 233 58.8
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 9.4e-63 244.6 203 62.6
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 1.2e-62 244.2 229 58.5
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 3.6e-62 242.7 187 64.7
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.3e-61 240.0 232 56.9
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 3.0e-61 239.6 228 60.1
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 3.0e-61 239.6 189 65.1
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 3.9e-61 239.2 235 56.6
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 3.9e-61 239.2 228 57.0
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 8.8e-61 238.0 227 56.8
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 8.8e-61 238.0 233 56.2
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 2.0e-60 236.9 233 56.7
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 7.4e-60 235.0 228 58.8
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.4e-60 235.0 227 57.7
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 9.7e-60 234.6 225 59.1
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 9.7e-60 234.6 200 60.5
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 9.7e-60 234.6 229 56.3
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 1.7e-59 233.8 227 58.1
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.7e-59 233.8 229 55.5
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.7e-59 232.6 244 54.9
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 8.2e-59 231.5 228 57.0
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 8.2e-59 231.5 244 56.1
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 8.2e-59 231.5 204 57.4
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 8.2e-59 231.5 229 56.8
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 2.4e-58 229.9 198 63.1
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.1e-58 229.6 244 55.7
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 9.1e-58 228.0 234 54.7
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.6e-57 227.3 228 57.0
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 1.6e-57 227.3 228 54.4
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 2.0e-57 226.9 194 57.7
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 3.5e-57 226.1 228 55.7
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 4.5e-57 225.7 230 51.7
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 7.7e-57 224.9 192 60.9
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 1.0e-56 224.6 228 54.8
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 1.7e-56 223.8 194 63.9
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 2.2e-56 223.4 231 54.1
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 2.9e-56 223.0 230 50.4
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 6.5e-56 221.9 231 51.1
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 1.5e-55 220.7 194 56.2
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 2.5e-55 219.9 224 53.6
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.5e-55 219.9 193 63.2
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 4.2e-55 219.2 262 51.5
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 5.5e-55 218.8 229 52.0
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 1.2e-54 217.6 194 55.2
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 3.6e-54 216.1 231 53.2
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 3.6e-54 216.1 194 54.6
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 3.6e-54 216.1 194 55.2
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 3.6e-54 216.1 193 54.9
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 8.0e-54 214.9 228 51.3
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 1.8e-53 213.8 225 51.6
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 2.3e-53 213.4 181 58.6
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 2.3e-53 213.4 228 51.8
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 3.0e-53 213.0 194 54.1
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 3.0e-53 213.0 228 51.8
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 5.2e-53 212.2 194 54.1
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 5.2e-53 212.2 194 53.6
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 5.2e-53 212.2 228 51.3
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 8.8e-53 211.5 227 52.0
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 1.5e-52 210.7 231 54.1
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 5.7e-52 208.8 194 52.6
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 5.7e-52 208.8 194 52.6
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 9.7e-52 208.0 231 49.8
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 9.7e-52 208.0 226 51.8
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 1.7e-51 207.2 194 52.6
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 2.8e-51 206.5 232 53.9
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 3.7e-51 206.1 232 53.0
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 1.1e-50 204.5 232 50.9
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 1.1e-50 204.5 181 54.7
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 1.1e-50 204.5 181 54.1
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.4e-50 204.1 227 51.5
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 1.8e-50 203.8 247 52.2
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.1e-50 203.0 187 57.8
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 3.1e-50 203.0 231 48.5
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 3.1e-50 203.0 253 47.0
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 4.5e-49 199.1 234 49.6
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 7.7e-49 198.4 198 52.0
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 8.5e-48 194.9 245 47.3
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 9.4e-47 191.4 224 50.0
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 6.1e-46 188.7 152 61.8
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 8.0e-46 188.3 194 48.5
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 8.0e-46 188.3 260 41.9
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.0e-45 188.0 201 46.8
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 2.6e-44 183.3 181 54.1
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 3.7e-43 179.5 181 53.0
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 6.3e-43 178.7 142 64.8
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 5.9e-41 172.2 237 47.3
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 2.2e-40 170.2 149 61.1
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 8.5e-40 168.3 171 51.5
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 2.5e-39 166.8 189 49.7
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 6.1e-38 162.2 131 63.4
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 8.0e-38 161.8 231 42.9
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 4.0e-37 159.5 235 41.7
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 5.2e-37 159.1 244 41.4
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 2.0e-36 157.1 195 45.1
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 5.0e-32 142.5 203 41.4
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 4.7e-30 136.0 152 50.0
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 6.1e-30 135.6 122 57.4
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 4.0e-29 132.9 225 37.8
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.3e-27 127.9 199 39.7
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 9.2e-26 121.7 203 38.9
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.6e-25 120.9 231 38.1
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.0e-25 120.6 182 40.1
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 2.8e-22 110.2 116 50.0
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 3.6e-22 109.8 135 48.9
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.4e-18 97.1 76 67.1
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.3e-16 91.3 88 59.1
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.4e-13 81.3 88 52.3
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 7.5e-12 75.5 71 52.1
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 2.7e-09 67.0 184 28.8
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 6.0e-09 65.9 164 31.7
FAN27G0705 Fragaria x ananassa HOM05D004951 ORTHO05D005840 8.6e-08 62.0 99 44.4
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 3.6e-06 56.6 53 52.8


User provided reference genes

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