Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 3.8e-113 412.1 318 100.0
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 8.7e-78 294.7 320 84.4
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 8.2e-60 235.0 322 75.8
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 1.8e-59 233.8 332 73.5
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 6.5e-57 225.3 332 72.6
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 2.1e-55 220.3 332 72.0
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 1.0e-46 191.4 337 65.6
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 6.7e-46 188.7 337 65.3
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 1.2e-42 177.9 285 67.4
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 5.5e-40 169.1 279 71.0
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 2.1e-39 167.2 308 68.5
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 4.7e-39 166.0 327 60.6
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 4.7e-39 166.0 279 70.6
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 1.0e-38 164.9 282 66.0
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 1.2e-37 161.4 281 69.4
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 2.0e-37 160.6 280 54.3
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 5.7e-37 159.1 284 65.5
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 5.7e-37 159.1 311 65.3
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 1.7e-36 157.5 316 59.8
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 3.7e-36 156.4 345 51.3
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 3.7e-36 156.4 300 67.7
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 4.8e-36 156.0 288 61.8
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 1.4e-35 154.5 262 70.2
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 1.8e-35 154.1 292 59.9
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 1.8e-35 154.1 283 68.9
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 3.1e-35 153.3 315 63.8
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 7.0e-35 152.1 312 63.1
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 9.1e-35 151.8 330 62.7
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 1.2e-34 151.4 358 57.3
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 1.2e-34 151.4 313 64.2
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 2.7e-34 150.2 306 63.7
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 3.5e-34 149.8 261 67.0
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 4.5e-34 149.4 280 66.1
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 4.5e-34 149.4 317 61.8
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 5.9e-34 149.1 165 55.8
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 5.9e-34 149.1 276 63.8
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 1.7e-33 147.5 284 59.9
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 2.9e-33 146.7 276 63.4
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 2.9e-33 146.7 340 54.1
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 3.8e-33 146.4 314 62.1
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 5.0e-33 146.0 292 64.0
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 6.6e-33 145.6 280 65.0
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 6.6e-33 145.6 311 63.7
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 8.6e-33 145.2 291 62.9
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 1.5e-32 144.4 331 59.5
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 1.5e-32 144.4 295 63.4
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 3.3e-32 143.3 280 65.0
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 3.3e-32 143.3 338 60.1
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 4.2e-32 142.9 284 65.8
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 5.5e-32 142.5 322 56.2
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 5.5e-32 142.5 325 60.6
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 5.5e-32 142.5 337 59.3
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 9.5e-32 141.7 280 63.9
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 2.1e-31 140.6 223 78.5
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 3.6e-31 139.8 288 60.8
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 4.7e-31 139.4 266 62.8
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 6.1e-31 139.0 297 60.6
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 8.0e-31 138.7 341 58.7
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 3.0e-30 136.7 371 53.1
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 4.0e-30 136.3 311 60.8
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 5.2e-30 136.0 399 50.1
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 6.8e-30 135.6 320 57.8
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 8.9e-30 135.2 306 60.1
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 1.2e-29 134.8 310 60.6
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.5e-29 134.4 191 84.3
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 2.0e-29 134.0 257 65.4
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 2.6e-29 133.7 367 54.2
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 3.4e-29 133.3 332 57.5
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 4.4e-29 132.9 257 66.5
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 4.4e-29 132.9 292 59.9
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 5.7e-29 132.5 318 56.3
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 9.8e-29 131.7 189 81.0
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 9.8e-29 131.7 267 68.9
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 9.8e-29 131.7 227 76.7
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 1.3e-28 131.3 275 63.6
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 1.3e-28 131.3 274 62.0
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 3.7e-28 129.8 288 56.6
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 3.7e-28 129.8 244 67.6
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 4.9e-28 129.4 271 57.2
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 8.3e-28 128.6 254 59.4
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 8.3e-28 128.6 219 78.1
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 1.1e-27 128.3 300 58.7
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 2.4e-27 127.1 338 58.3
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 5.4e-27 125.9 298 56.7
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 7.0e-27 125.6 247 68.4
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 1.2e-26 124.8 226 72.1
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 2.7e-26 123.6 157 49.7
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 3.5e-26 123.2 247 70.0
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 3.5e-26 123.2 237 68.4
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 4.5e-26 122.9 282 62.4
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 4.5e-26 122.9 357 56.3
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 5.9e-26 122.5 258 66.3
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 1.7e-25 120.9 230 72.6
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 1.7e-25 120.9 215 52.6
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 8.6e-25 118.6 191 77.0
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 8.6e-25 118.6 187 80.7
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 1.5e-24 117.9 189 74.6
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 1.2e-23 114.8 364 49.7
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 1.6e-23 114.4 201 74.1
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 2.8e-23 113.6 289 42.6
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 6.1e-23 112.5 160 45.6
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 5.2e-22 109.4 128 53.1
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 6.8e-22 109.0 363 49.6
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 1.5e-21 107.8 352 55.1
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 9.8e-21 105.1 60 83.3
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 6.4e-20 102.4 104 59.6
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 1.4e-19 101.3 127 51.2
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 1.9e-19 100.9 268 44.8
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 7.8e-18 95.5 190 41.6
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 1.0e-17 95.1 380 28.2
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 1.3e-17 94.7 197 72.1
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 5.0e-17 92.8 94 56.4
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 1.1e-16 91.7 207 70.0
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 3.3e-16 90.1 177 53.7
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 3.7e-12 76.6 82 48.8
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 1.1e-11 75.1 82 47.6
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 7.0e-11 72.4 82 46.3
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 9.2e-11 72.0 36 94.4
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 2.7e-10 70.5 149 89.9
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 1.7e-09 67.8 82 42.7
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 3.0e-09 67.0 82 43.9
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.9e-09 66.6 63 47.6
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 8.6e-09 65.5 113 39.8
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 1.5e-08 64.7 113 39.8
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 1.9e-08 64.3 100 38.0
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 3.3e-08 63.5 63 46.0
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 3.3e-08 63.5 85 41.2
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 3.3e-08 63.5 63 46.0
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 7.3e-08 62.4 138 34.1
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 7.3e-08 62.4 100 37.0
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 1.6e-07 61.2 113 35.4
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 1.6e-07 61.2 111 36.0
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 2.8e-07 60.5 107 36.4
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 3.6e-07 60.1 127 32.3
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 3.6e-07 60.1 100 38.0
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 4.7e-07 59.7 64 42.2
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 6.2e-07 59.3 43 67.4
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 1.1e-06 58.5 83 41.0
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 1.4e-06 58.2 104 33.7
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 1.4e-06 58.2 126 34.1
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-06 58.2 126 34.1
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 1.4e-06 58.2 64 42.2
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 5.2e-06 56.2 70 40.0
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 8.9e-06 55.5 48 50.0


User provided reference genes

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