Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 2.0e-201 706.8 873 100.0
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 4.6e-153 546.2 875 90.9
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 1.7e-144 517.7 873 80.6
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 3.6e-142 510.0 873 87.6
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 1.9e-135 487.6 877 86.4
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 1.5e-124 451.4 866 85.6
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 7.4e-119 432.6 869 83.8
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 9.6e-119 432.2 869 80.8
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 4.0e-117 426.8 874 80.3
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 4.0e-117 426.8 874 82.8
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 1.0e-112 412.1 872 77.2
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 1.0e-112 412.1 869 76.8
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.1e-109 402.1 875 79.1
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 2.4e-109 401.0 872 81.4
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 3.4e-108 397.1 868 75.2
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 3.8e-107 393.7 869 77.1
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 1.1e-106 392.1 869 81.4
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 1.4e-106 391.7 869 81.6
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 2.3e-104 384.4 874 69.8
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 2.2e-99 367.9 871 78.4
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 3.9e-96 357.1 874 76.2
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 3.7e-94 350.5 873 75.7
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 6.3e-94 349.7 873 74.0
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 2.6e-92 344.4 875 76.2
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 7.7e-92 342.8 868 72.5
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 3.6e-89 334.0 875 73.4
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 6.1e-89 333.2 877 69.3
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 1.0e-88 332.4 873 68.4
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 3.9e-88 330.5 877 73.0
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 6.7e-88 329.7 868 72.1
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 2.0e-87 328.2 875 68.3
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 9.7e-87 325.9 871 75.7
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 1.3e-86 325.5 881 63.6
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 1.7e-86 325.1 873 67.8
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 3.7e-86 323.9 873 79.0
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 8.2e-86 322.8 872 73.7
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 1.4e-85 322.0 869 74.6
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 9.1e-85 319.3 882 66.4
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 7.7e-84 316.2 869 74.3
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 1.0e-83 315.8 869 74.5
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 3.8e-83 313.9 867 76.2
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 1.5e-82 312.0 866 76.6
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 1.9e-82 311.6 872 75.5
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 4.2e-82 310.5 872 69.0
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 4.2e-82 310.5 872 69.0
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 4.2e-82 310.5 869 74.1
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 2.1e-81 308.1 872 75.3
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 3.6e-81 307.4 869 74.7
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 2.3e-80 304.7 868 65.9
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 4.0e-80 303.9 868 75.9
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 1.8e-77 295.0 895 70.8
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 2.4e-77 294.7 867 75.8
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 4.1e-77 293.9 874 67.6
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 1.2e-76 292.4 872 74.9
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 1.2e-76 292.4 872 74.4
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 3.5e-76 290.8 872 74.4
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 1.7e-75 288.5 867 75.8
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 3.2e-74 284.3 868 71.5
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 1.2e-73 282.3 869 74.7
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 8.0e-73 279.6 438 62.3
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 1.4e-72 278.9 868 70.6
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 5.2e-72 276.9 866 76.2
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 7.5e-71 273.1 869 75.4
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 1.7e-70 271.9 872 72.2
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 2.8e-70 271.2 872 74.7
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 4.8e-70 270.4 871 76.3
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 4.8e-70 270.4 365 75.1
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 1.1e-69 269.2 783 80.7
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 1.1e-69 269.2 379 73.1
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.3e-67 262.3 196 66.3
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 2.2e-67 261.5 361 73.1
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 2.9e-67 261.2 365 74.2
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 3.8e-67 260.8 367 73.8
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 1.1e-66 259.2 856 68.7
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 1.9e-66 258.5 374 74.1
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 4.0e-64 250.8 865 75.4
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 5.2e-64 250.4 834 74.7
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 4.4e-63 247.3 872 72.6
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 3.7e-62 244.2 834 74.3
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 7.7e-60 236.5 191 61.8
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 8.0e-57 226.5 381 67.7
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 1.8e-56 225.3 377 67.4
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 2.0e-55 221.9 868 70.3
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 1.3e-54 219.2 836 69.0
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 3.7e-54 217.6 368 68.8
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 4.1e-53 214.2 411 54.0
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 9.2e-53 213.0 877 70.2
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 1.6e-52 212.2 878 66.7
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 4.6e-44 184.1 890 55.7
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 7.8e-44 183.3 324 72.8
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 1.0e-43 183.0 187 50.8
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 1.7e-43 182.2 180 50.6
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 1.7e-43 182.2 880 60.3
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 1.1e-42 179.5 381 61.4
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 1.5e-39 169.1 389 60.4
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 6.4e-38 163.7 375 61.6
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 6.0e-36 157.1 744 78.9
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 2.5e-34 151.8 191 43.5
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 1.8e-32 145.6 185 42.2
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 1.1e-29 136.3 92 75.0
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 5.4e-29 134.0 395 55.7
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 5.2e-24 117.5 142 44.4
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 6.9e-24 117.1 98 60.2
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 1.7e-22 112.5 142 43.7
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.1e-21 109.8 148 46.6
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 1.1e-13 83.2 114 45.6
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 2.5e-10 72.0 62 58.1
SEGI_20674 Sequoiadendron giganteum HOM05D007101 ORTHO05D008632 2.6e-07 62.0 69 47.8


User provided reference genes

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