Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 2.0e-135 485.7 243 100.0
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 1.0e-110 403.7 230 87.4
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 3.2e-104 382.1 229 79.9
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 3.5e-103 378.6 229 80.3
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 4.6e-103 378.3 227 79.7
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.7e-102 376.3 229 79.9
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 6.6e-102 374.4 229 79.0
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 1.3e-94 350.1 224 77.2
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 1.7e-94 349.7 229 74.2
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 7.3e-93 344.4 242 71.5
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 7.3e-93 344.4 227 74.0
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 1.6e-92 343.2 227 73.6
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 4.8e-92 341.7 225 74.7
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 6.2e-92 341.3 226 73.5
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 6.2e-92 341.3 230 73.9
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 1.1e-91 340.5 229 73.4
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 1.1e-91 340.5 226 73.5
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 2.4e-91 339.3 227 74.4
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 5.3e-91 338.2 224 73.2
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 2.6e-90 335.9 224 73.2
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 4.5e-90 335.1 225 72.9
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 5.8e-90 334.7 227 71.4
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 9.9e-90 334.0 220 73.6
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 1.7e-89 333.2 224 72.3
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 3.8e-89 332.0 226 72.1
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 3.8e-89 332.0 224 72.3
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 6.4e-89 331.3 230 71.7
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 1.1e-88 330.5 220 72.7
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 1.4e-88 330.1 225 72.0
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 1.4e-88 330.1 223 71.7
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 9.3e-88 327.4 223 71.7
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 1.6e-87 326.6 225 70.7
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 2.1e-87 326.2 248 64.9
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 2.7e-87 325.9 226 72.6
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 2.7e-87 325.9 227 68.7
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 3.5e-87 325.5 223 70.4
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.8e-86 323.2 249 66.3
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 2.3e-86 322.8 227 72.2
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.3e-85 318.9 249 65.9
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 1.6e-84 316.6 226 68.6
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 2.8e-84 315.8 220 70.5
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 3.7e-84 315.5 220 69.1
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 6.2e-84 314.7 248 64.9
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 2.4e-83 312.8 220 69.1
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 5.3e-83 311.6 222 68.0
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 6.9e-83 311.2 222 68.0
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 2.0e-82 309.7 224 67.9
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 2.6e-82 309.3 224 68.3
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 2.2e-81 306.2 227 66.5
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 2.9e-81 305.8 226 65.9
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 2.9e-81 305.8 229 64.2
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 2.9e-81 305.8 225 65.3
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 6.4e-81 304.7 224 65.2
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.1e-80 303.9 220 67.3
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 1.1e-80 303.9 220 67.7
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 4.2e-80 302.0 225 67.6
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 5.5e-80 301.6 228 66.7
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 7.1e-80 301.2 227 63.0
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 9.3e-80 300.8 224 67.4
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 1.2e-79 300.4 227 64.3
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 1.6e-79 300.1 220 65.0
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 1.6e-79 300.1 228 64.9
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 2.1e-79 299.7 222 67.6
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 2.1e-79 299.7 226 65.5
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 2.1e-79 299.7 226 65.0
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 4.6e-79 298.5 229 63.3
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 4.6e-79 298.5 232 64.7
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.0e-78 297.4 220 65.9
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 1.3e-78 297.0 226 65.5
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 1.3e-78 297.0 224 66.5
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 1.8e-78 296.6 208 69.7
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 5.1e-78 295.0 220 65.5
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 6.7e-78 294.7 229 63.3
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 2.5e-77 292.7 220 65.5
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 2.1e-76 289.7 221 63.3
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 4.8e-76 288.5 229 62.0
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 1.1e-75 287.3 221 63.3
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 3.1e-75 285.8 224 61.6
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 6.9e-75 284.6 231 63.2
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 1.7e-73 280.0 221 61.5
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 2.9e-73 279.3 223 62.8
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 4.2e-72 275.4 226 60.6
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 8.2e-68 261.2 162 74.7
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 3.4e-66 255.8 225 58.2
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 1.7e-65 253.4 223 58.3
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 1.1e-64 250.8 235 54.9
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 2.5e-64 249.6 235 60.0
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 2.1e-63 246.5 235 59.6
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 3.6e-63 245.7 221 58.8
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 2.3e-62 243.0 169 70.4
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 8.8e-62 241.1 222 55.9
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 1.5e-61 240.4 162 71.0
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 3.3e-61 239.2 158 69.6
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 1.8e-59 233.4 141 76.6
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 1.8e-59 233.4 175 65.7
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 3.1e-59 232.6 161 67.7
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 1.3e-57 227.3 170 67.1
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 8.5e-57 224.6 224 54.5
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 3.0e-54 216.1 226 49.1
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 8.8e-54 214.5 222 49.5
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 2.8e-52 209.5 218 51.8
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.1e-51 207.6 167 62.3
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 9.1e-51 204.5 167 61.7
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 2.6e-50 203.0 174 59.2
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 7.7e-50 201.4 220 47.3
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 3.6e-47 192.6 151 68.9
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 5.7e-45 185.3 143 62.2
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 3.7e-44 182.6 120 71.7
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 4.1e-43 179.1 120 70.0
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 7.7e-42 174.9 144 67.4
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 2.1e-39 166.8 204 47.5
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 3.4e-37 159.5 107 70.1
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 7.5e-37 158.3 126 66.7
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 5.0e-33 145.6 126 57.9
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 1.2e-29 134.4 226 38.9
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.4e-27 127.5 106 58.5
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 1.4e-14 84.3 52 75.0
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 1.4e-14 84.3 52 75.0
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.3e-14 83.6 185 33.0
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 3.1e-14 83.2 113 41.6
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 3.1e-14 83.2 113 41.6
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 2.3e-09 67.0 47 70.2
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 1.1e-08 64.7 192 27.1
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 1.5e-08 64.3 195 29.7
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 2.1e-07 60.5 194 26.8
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 1.4e-06 57.8 190 27.9
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 1.4e-06 57.8 194 26.8
SEGI_12501 Sequoiadendron giganteum HOM05D006935 ORTHO05D008944 1.8e-06 57.4 193 29.0
ClCG02G010000 Citrullus lanatus HOM05D006820 ORTHO05D008526 4.0e-06 56.2 35 65.7
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 5.2e-06 55.8 189 28.6
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 5.2e-06 55.8 181 29.3
Ah.02g110460 Amaranthus hybridus HOM05D006935 ORTHO05D008944 8.9e-06 55.1 182 26.9


User provided reference genes

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