Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 4.4e-95 351.7 230 100.0
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 2.3e-80 302.8 230 82.6
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 1.8e-77 293.1 230 81.3
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 1.6e-76 290.0 227 79.7
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 8.5e-75 284.3 228 67.5
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 1.1e-74 283.9 230 72.2
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 2.5e-74 282.7 227 75.3
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 9.4e-74 280.8 227 76.2
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 9.4e-74 280.8 230 80.0
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 9.4e-74 280.8 230 80.0
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 1.2e-73 280.4 230 75.7
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 1.6e-73 280.0 230 73.0
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 2.1e-73 279.6 230 73.5
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 2.7e-73 279.3 231 79.7
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 6.1e-73 278.1 230 79.1
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 1.4e-72 276.9 230 77.0
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 1.3e-70 270.4 230 72.2
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 4.8e-70 268.5 228 71.9
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 6.3e-70 268.1 230 76.5
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 2.4e-69 266.2 226 74.8
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 5.4e-69 265.0 231 71.9
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 9.1e-69 264.2 228 70.2
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 1.2e-68 263.8 230 71.7
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 1.6e-68 263.5 231 71.4
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 3.5e-68 262.3 228 73.2
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 5.9e-68 261.5 230 70.0
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 1.0e-67 260.8 228 67.1
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 2.3e-67 259.6 230 77.0
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 2.3e-67 259.6 229 70.7
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 2.3e-67 259.6 229 70.7
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 6.6e-67 258.1 230 74.8
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 8.6e-67 257.7 228 68.4
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 1.5e-66 256.9 227 77.5
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 4.2e-66 255.4 229 69.0
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 5.5e-66 255.0 228 71.9
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 7.2e-66 254.6 229 70.3
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 7.2e-66 254.6 229 67.7
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 9.5e-66 254.2 230 75.7
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 9.5e-66 254.2 225 69.3
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 4.7e-65 251.9 230 76.1
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 1.0e-64 250.8 222 76.1
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 1.0e-64 250.8 229 73.8
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 1.8e-64 250.0 230 74.8
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 4.0e-64 248.8 228 68.0
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 5.2e-64 248.4 230 78.7
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 8.9e-64 247.7 228 68.9
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 8.9e-64 247.7 230 74.3
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 2.6e-63 246.1 225 72.9
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 7.5e-63 244.6 226 72.6
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.3e-62 243.8 225 69.3
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 4.9e-62 241.9 230 73.0
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 6.3e-62 241.5 229 69.9
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 8.3e-62 241.1 230 72.6
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 1.4e-61 240.4 230 70.0
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.4e-61 240.4 229 72.9
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 3.1e-61 239.2 226 69.0
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 3.1e-61 239.2 228 72.8
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 9.2e-61 237.7 225 65.3
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 1.6e-60 236.9 230 71.3
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 1.0e-59 234.2 228 70.6
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 2.3e-59 233.0 227 64.8
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 2.3e-59 233.0 229 70.3
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 2.3e-59 233.0 235 64.7
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 2.9e-59 232.6 230 69.1
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 5.0e-59 231.9 230 72.2
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 5.0e-59 231.9 230 67.0
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 2.5e-58 229.6 227 67.0
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 3.3e-58 229.2 227 74.4
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 5.6e-58 228.4 245 62.9
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 5.6e-58 228.4 225 65.3
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 7.3e-58 228.0 228 62.3
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 1.2e-57 227.3 228 66.2
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 1.2e-57 227.3 230 69.6
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 1.6e-57 226.9 226 64.6
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 2.1e-57 226.5 259 63.3
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 4.7e-57 225.3 231 70.6
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 4.0e-56 222.2 249 59.8
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 4.0e-56 222.2 230 69.1
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 1.5e-55 220.3 228 64.9
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 2.0e-55 219.9 230 65.7
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 3.4e-55 219.2 331 54.7
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 4.4e-55 218.8 227 73.6
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.3e-54 217.2 228 72.4
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 2.9e-54 216.1 228 68.0
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 3.7e-54 215.7 228 71.5
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 6.4e-54 214.9 233 64.8
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 6.4e-54 214.9 226 73.0
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 8.3e-54 214.5 155 74.2
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 1.9e-53 213.4 228 68.4
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 4.1e-53 212.2 227 55.9
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 9.2e-53 211.1 230 55.2
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 1.6e-52 210.3 230 63.9
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 4.6e-52 208.8 228 69.3
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 7.8e-52 208.0 230 65.2
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 2.3e-51 206.5 226 60.2
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.9e-50 203.4 230 63.9
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 1.6e-49 200.3 223 51.6
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 2.8e-49 199.5 237 61.2
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 3.6e-49 199.1 226 55.8
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 2.3e-48 196.4 230 67.4
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 2.0e-47 193.4 228 57.9
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 3.4e-47 192.6 228 57.5
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 1.3e-46 190.7 230 66.5
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 2.2e-46 189.9 228 53.1
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 2.9e-46 189.5 228 54.4
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 4.9e-46 188.7 228 54.4
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 4.1e-45 185.7 226 64.6
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 7.8e-44 181.4 226 61.9
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 7.8e-44 181.4 226 61.9
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 6.6e-43 178.3 227 63.0
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 1.1e-42 177.6 226 61.9
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 2.5e-42 176.4 226 61.5
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 8.1e-41 171.4 188 66.0
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 8.1e-41 171.4 226 54.4
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 4.0e-40 169.1 211 61.1
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 2.0e-39 166.8 226 61.9
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 3.2e-37 159.5 99 78.8
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 1.7e-27 127.1 66 89.4
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 3.9e-27 125.9 226 48.2
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 8.1e-25 118.2 79 75.9
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 5.3e-24 115.5 231 37.7
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 1.7e-22 110.5 68 79.4
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 2.9e-22 109.8 231 36.4
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 2.4e-21 106.7 95 58.9
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 1.2e-20 104.4 225 38.2
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 3.3e-18 96.3 225 43.1
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 2.1e-17 93.6 230 33.9
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 5.4e-13 79.0 159 40.3
PSO541G1702 Papaver somniferum HOM05D006255 ORTHO05D008014 7.1e-13 78.6 94 55.3
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 2.5e-10 70.1 50 70.0
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 1.0e-06 58.2 78 42.3


User provided reference genes

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