Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 2.2e-263 911.8 465 100.0
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 5.7e-211 737.6 449 82.9
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 1.8e-204 716.1 448 79.9
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 3.1e-193 678.7 452 77.0
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 7.0e-193 677.6 452 76.8
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 7.2e-190 667.5 452 76.1
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.6e-189 666.4 452 76.8
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 1.2e-163 580.5 449 65.3
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 3.7e-162 575.5 434 66.8
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 1.9e-161 573.2 450 65.6
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 2.7e-160 569.3 448 65.2
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 9.9e-155 550.8 448 62.3
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 1.7e-154 550.1 419 67.1
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 1.7e-154 550.1 419 67.1
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 4.9e-154 548.5 458 61.4
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 2.1e-152 543.1 352 77.0
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 9.6e-150 534.3 442 62.9
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 1.8e-148 530.0 438 60.7
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 2.0e-147 526.6 448 59.8
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 2.6e-147 526.2 424 59.4
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 3.4e-147 525.8 418 62.4
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 1.7e-146 523.5 419 62.1
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 1.7e-146 523.5 422 62.3
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 2.2e-146 523.1 440 59.5
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 8.4e-146 521.2 452 59.5
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 1.1e-145 520.8 428 61.4
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 2.4e-145 519.6 439 58.8
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 2.1e-144 516.5 429 59.9
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 4.6e-144 515.4 449 58.1
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 6.0e-144 515.0 418 61.5
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 7.3e-142 508.1 453 57.0
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 4.8e-141 505.4 453 56.5
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 8.1e-141 504.6 418 61.2
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 1.4e-140 503.8 418 61.2
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 2.9e-138 496.1 449 59.0
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 1.0e-135 487.6 414 58.2
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 2.3e-135 486.5 425 59.3
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 2.3e-135 486.5 441 56.7
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 3.9e-135 485.7 414 59.7
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 3.9e-135 485.7 414 59.2
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 8.7e-135 484.6 415 58.1
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 1.1e-134 484.2 414 57.5
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 1.1e-134 484.2 414 57.5
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 1.1e-134 484.2 414 58.0
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 2.5e-134 483.0 426 58.5
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 4.3e-134 482.3 414 57.5
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 4.3e-134 482.3 414 57.5
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 4.3e-134 482.3 451 56.1
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 1.6e-133 480.3 439 57.4
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 2.8e-133 479.6 415 58.1
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 3.7e-133 479.2 438 55.0
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 1.5e-131 473.8 422 53.8
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 4.5e-131 472.2 423 58.6
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 7.1e-129 464.9 444 54.3
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 1.3e-127 460.7 440 56.4
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.3e-127 459.9 416 55.8
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 3.9e-127 459.1 422 54.7
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 2.1e-125 453.4 450 52.9
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 9.0e-124 448.0 416 54.8
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 1.3e-122 444.1 445 53.5
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 2.2e-122 443.4 432 54.2
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 1.1e-121 441.0 447 50.8
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 9.3e-121 438.0 440 52.0
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 2.1e-120 436.8 425 52.9
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 3.5e-120 436.0 414 53.9
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 7.9e-120 434.9 416 54.1
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 1.1e-118 431.0 431 50.8
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 7.4e-118 428.3 446 51.3
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 2.0e-115 420.2 434 49.8
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 2.5e-113 413.3 416 51.2
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 7.2e-113 411.8 419 52.3
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 2.0e-110 403.7 355 59.2
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 4.8e-109 399.1 419 48.4
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 4.1e-108 396.0 411 50.6
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 5.0e-106 389.0 443 47.6
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 2.1e-104 383.6 356 54.8
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 3.0e-103 379.8 322 58.7
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 5.1e-103 379.0 447 47.4
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 1.2e-99 367.9 441 45.1
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 3.5e-99 366.3 467 46.7
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 7.7e-99 365.2 432 47.0
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 3.6e-96 356.3 418 46.4
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 2.0e-94 350.5 441 45.4
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 2.6e-94 350.1 425 47.5
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 2.6e-94 350.1 440 46.1
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 4.4e-94 349.4 441 44.9
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 4.4e-94 349.4 440 45.9
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 1.1e-92 344.7 431 44.5
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 6.5e-90 335.5 417 44.1
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 1.3e-85 321.2 453 42.8
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 6.1e-80 302.4 298 52.3
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 8.0e-80 302.0 454 37.4
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 1.3e-74 284.6 249 55.4
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 8.6e-74 282.0 236 58.5
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 1.0e-71 275.0 291 49.5
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 8.9e-71 271.9 417 39.3
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 8.3e-69 265.4 217 59.9
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 7.0e-60 235.7 400 36.5
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.1e-56 224.2 185 60.0
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 2.0e-54 217.6 408 35.0
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 2.4e-44 184.1 178 50.0
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 2.7e-43 180.6 170 52.4
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 4.4e-38 163.3 176 48.9
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 2.7e-35 154.1 139 56.1
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 3.6e-32 143.7 124 56.5
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 3.6e-32 143.7 124 56.5
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.4e-31 141.0 171 45.0
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 6.9e-31 139.4 429 26.8
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 2.0e-30 137.9 144 50.7
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 3.8e-29 133.7 215 38.1
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 2.4e-28 131.0 134 53.0
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 2.4e-28 131.0 146 46.6
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 5.4e-28 129.8 209 37.3
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 9.3e-28 129.0 426 24.4
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 4.6e-27 126.7 120 52.5
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 1.8e-26 124.8 115 53.9
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 1.6e-19 101.7 105 50.5
arahy.Tifrunner.gnm1.ann1.YH938E Arachis hypogaea HOM05D006294 ORTHO05D007668 4.8e-16 90.1 105 48.6
arahy.Tifrunner.gnm1.ann1.QPA1DX Arachis hypogaea HOM05D006294 ORTHO05D007668 6.9e-15 86.3 160 37.5
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 6.9e-15 86.3 96 46.9
Nn4g23847 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.7e-13 81.6 137 39.4
arahy.Tifrunner.gnm1.ann1.D2HFCL Arachis hypogaea HOM05D006294 ORTHO05D007668 2.5e-12 77.8 118 39.0
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 1.0e-10 72.4 243 27.6
SEGI_31683 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 1.3e-10 72.0 215 25.6
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.8e-10 71.6 91 40.7
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 2.3e-10 71.2 98 37.8
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 2.3e-10 71.2 243 27.2
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 5.1e-10 70.1 91 39.6
Haze_03379 Corylus avellana HOM05D001269 ORTHO05D001083 5.1e-10 70.1 57 63.2
Zm00001eb028500 Zea mays HOM05D004127 ORTHO05D005119 6.7e-10 69.7 242 24.0
HPP92_004920 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.1e-09 68.9 62 50.0
arahy.Tifrunner.gnm1.ann1.L9KWYC Arachis hypogaea HOM05D006294 ORTHO05D007668 2.5e-09 67.8 63 52.4
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 5.7e-09 66.6 91 39.6
CBR_g1024 Chara braunii HOM05D010152 ORTHO05D007668 1.3e-08 65.5 91 38.5
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 1.3e-08 65.5 91 38.5
PRCOL_00003068 Prasinoderma coloniale HOM05D004127 ORTHO05D005119 1.3e-08 65.5 92 33.7
Cfa005772 Carpinus fangiana HOM05D004127 ORTHO05D005119 1.6e-08 65.1 101 30.7
Haze_05068 Corylus avellana HOM05D004127 ORTHO05D005119 6.3e-08 63.2 101 29.7
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 6.3e-08 63.2 101 33.7
Mapoly0089s0054 Marchantia polymorpha HOM05D004079 ORTHO05D005437 6.3e-08 63.2 252 25.8
CANSAT25G0729 Cannabis sativa HOM05D004127 ORTHO05D005119 8.2e-08 62.8 101 31.7
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 8.2e-08 62.8 91 34.1
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 8.2e-08 62.8 101 33.7
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 8.2e-08 62.8 101 32.7
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 1.4e-07 62.0 108 34.3
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 1.8e-07 61.6 101 31.7
Potri.002G193900 Populus trichocarpa HOM05D004127 ORTHO05D005119 2.4e-07 61.2 101 33.7
arahy.Tifrunner.gnm1.ann1.JW8TM2 Arachis hypogaea HOM05D006294 ORTHO05D007668 5.3e-07 60.1 58 50.0
Manes.05G014100 Manihot esculenta HOM05D004127 ORTHO05D005119 5.3e-07 60.1 101 31.7
AagrBONN_evm.TU.Sc2ySwM_117.2521 Anthoceros agrestis HOM05D004127 ORTHO05D005119 9.0e-07 59.3 91 35.2
SMO271G0164 Selaginella moellendorffii HOM05D004079 ORTHO05D005437 9.0e-07 59.3 91 37.4
Ca_06960_v3 Cicer arietinum L. HOM05D004127 ORTHO05D005119 1.2e-06 58.9 91 34.1
FvH4_1g27040 Fragaria vesca HOM05D004127 ORTHO05D005119 1.2e-06 58.9 101 30.7
FAN26G0855 Fragaria x ananassa HOM05D004127 ORTHO05D005119 1.2e-06 58.9 101 30.7
FAN28G2982 Fragaria x ananassa HOM05D004127 ORTHO05D005119 1.2e-06 58.9 101 30.7
MBI18_g03637_MAGBIO Magnolia biondii HOM05D004127 ORTHO05D005119 1.5e-06 58.5 101 31.7
Prupe.3G010400 Prunus persica HOM05D004127 ORTHO05D005119 1.5e-06 58.5 101 30.7
CAN.G141.7 Capsicum annuum HOM05D000001 ORTHO05D009726 2.6e-06 57.8 121 25.6
MD09G1284400 Malus domestica HOM05D004127 ORTHO05D005119 2.6e-06 57.8 101 30.7
vmacro15103 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 2.6e-06 57.8 101 30.7
FAN19G1378 Fragaria x ananassa HOM05D004127 ORTHO05D005119 3.4e-06 57.4 100 30.0
FAN23G1564 Fragaria x ananassa HOM05D004127 ORTHO05D005119 3.4e-06 57.4 101 29.7
RcHm_v2.0_Chr3g0487361 Rosa chinensis HOM05D004127 ORTHO05D005119 5.9e-06 56.6 101 29.7
CDE08G0979 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 7.6e-06 56.2 101 29.7
CDE02G4605 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 1.0e-05 55.8 101 29.7
TPR.G29269 Trifolium pratense HOM05D002244 ORTHO05D002269 1.0e-05 55.8 306 20.3


User provided reference genes

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