Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 4.0e-78 294.7 144 100.0
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 1.5e-77 292.7 144 98.6
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 1.7e-76 289.3 144 97.2
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 1.7e-76 289.3 144 97.2
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 2.8e-76 288.5 144 96.5
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.8e-76 288.5 144 96.5
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 6.3e-76 287.3 144 95.8
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 1.4e-75 286.2 144 95.8
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.4e-75 286.2 144 95.8
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.4e-75 285.4 144 95.8
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 7.0e-75 283.9 144 95.1
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 9.1e-75 283.5 144 94.4
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 9.1e-75 283.5 144 94.4
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 1.6e-74 282.7 144 94.4
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 1.6e-74 282.7 144 93.8
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 1.6e-74 282.7 144 94.4
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 2.7e-74 282.0 144 94.4
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 2.7e-74 282.0 144 93.8
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 4.5e-74 281.2 144 94.4
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 4.5e-74 281.2 142 94.4
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 5.9e-74 280.8 144 93.8
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 5.9e-74 280.8 141 95.0
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 5.9e-74 280.8 141 95.0
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 5.9e-74 280.8 144 93.1
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 7.7e-74 280.4 144 92.4
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 1.0e-73 280.0 144 93.8
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 1.0e-73 280.0 144 93.1
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 93.8
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 93.1
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 93.1
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 93.8
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 93.1
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 93.1
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 93.8
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 2.2e-73 278.9 143 93.7
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 93.1
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 92.4
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 93.1
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 5.0e-73 277.7 141 92.2
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 92.4
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 92.4
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 93.1
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 91.7
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 92.4
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 91.7
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 92.4
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 1.5e-72 276.2 144 92.4
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 1.5e-72 276.2 143 91.6
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 1.5e-72 276.2 141 93.6
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 1.5e-72 276.2 141 93.6
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 1.5e-72 276.2 144 92.4
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 2.5e-72 275.4 141 92.9
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 2.5e-72 275.4 141 92.9
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 2.5e-72 275.4 141 92.9
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 2.5e-72 275.4 141 92.9
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 3.2e-72 275.0 144 91.7
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 4.2e-72 274.6 141 92.2
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 7.2e-72 273.9 144 90.3
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 9.4e-72 273.5 141 92.9
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 9.4e-72 273.5 144 91.0
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.2e-71 273.1 144 89.6
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 1.2e-71 273.1 141 92.9
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.1e-71 272.3 144 90.3
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 3.6e-71 271.6 144 89.6
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 4.7e-71 271.2 144 88.9
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 4.7e-71 271.2 141 90.8
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 1.0e-70 270.0 144 88.9
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 1.4e-70 269.6 144 88.9
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 1.8e-70 269.2 142 88.0
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.8e-70 269.2 141 90.1
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 3.0e-70 268.5 141 90.1
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 6.8e-70 267.3 141 89.4
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 5.7e-69 264.2 154 85.7
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 2.2e-68 262.3 142 87.3
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 2.8e-68 261.9 170 76.5
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 3.7e-68 261.5 141 88.7
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 3.7e-68 261.5 144 84.7
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 3.7e-68 261.5 138 87.7
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 4.8e-68 261.2 167 77.8
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 4.1e-67 258.1 140 88.6
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 4.1e-67 258.1 140 85.7
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 5.4e-67 257.7 140 86.4
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 5.4e-67 257.7 140 85.7
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 5.4e-67 257.7 140 85.7
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 9.1e-67 256.9 138 85.5
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 9.1e-67 256.9 130 93.1
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 1.2e-66 256.5 140 85.7
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 1.6e-66 256.1 140 85.7
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 2.0e-66 255.8 140 86.4
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 3.5e-66 255.0 140 85.7
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 5.9e-66 254.2 138 85.5
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 7.7e-66 253.8 137 86.1
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.0e-65 253.4 140 85.0
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 82.1
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 2.5e-64 248.8 208 64.4
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 3.3e-64 248.4 138 83.3
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 4.2e-64 248.1 202 65.3
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 7.2e-64 247.3 140 83.6
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 9.5e-64 246.9 140 84.3
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 9.5e-64 246.9 140 84.3
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 9.5e-64 246.9 140 84.3
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 9.5e-64 246.9 140 84.3
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 1.2e-63 246.5 140 81.4
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 1.2e-63 246.5 140 81.4
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 4.7e-63 244.6 140 80.0
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 4.7e-63 244.6 140 80.0
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.0e-62 243.4 168 72.6
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 3.0e-62 241.9 137 83.9
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 4.0e-62 241.5 138 81.2
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 6.8e-62 240.7 156 76.9
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 8.3e-60 233.8 141 80.9
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 1.2e-58 229.9 129 82.9
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 3.5e-58 228.4 144 72.2
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 5.9e-58 227.6 140 77.9
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 8.0e-55 217.2 142 69.7
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 8.3e-52 207.2 122 80.3
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 5.4e-51 204.5 138 65.2
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 2.0e-50 202.6 114 82.5
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 3.5e-50 201.8 160 65.0
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 4.6e-50 201.4 136 65.4
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.5e-48 196.4 120 80.0
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 3.3e-48 195.3 99 93.9
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 8.0e-47 190.7 97 90.7
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 1.2e-42 176.8 117 75.2
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 6.2e-31 137.9 74 90.5
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 2.6e-29 132.5 139 48.9
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 9.9e-29 130.6 74 85.1
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 8.4e-28 127.5 74 82.4
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 8.4e-28 127.5 140 52.1
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 1.9e-27 126.3 74 81.1
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 8.7e-17 90.9 43 93.0
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 2.9e-12 75.9 115 39.1
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 8.4e-12 74.3 157 31.2
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 4.2e-11 72.0 53 64.2
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 1.6e-10 70.1 44 75.0
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 2.8e-07 59.3 132 28.0
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 4.8e-07 58.5 36 69.4
C03p66780 Brassica napus HOM05D046457 ORTHO05D032727 1.4e-06 57.0 83 39.8


User provided reference genes

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