Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 9.3e-223 776.5 389 100.0
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 2.5e-175 619.0 414 76.8
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 7.5e-156 554.3 416 71.2
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 1.4e-149 533.5 416 69.0
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 8.9e-149 530.8 416 68.5
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 5.0e-144 515.0 413 66.3
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 1.6e-142 510.0 421 65.1
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 3.7e-139 498.8 413 63.9
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 8.3e-139 497.7 402 66.7
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 1.9e-138 496.5 413 63.9
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 4.6e-137 491.9 415 63.4
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.2e-134 483.8 418 64.6
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 6.2e-134 481.5 414 63.3
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 1.4e-133 480.3 415 62.4
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 1.5e-132 476.9 413 62.0
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 4.1e-130 468.8 415 60.2
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 3.0e-128 462.6 412 60.4
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 1.1e-127 460.7 414 61.8
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 2.8e-126 456.1 471 55.4
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 6.8e-125 451.4 415 58.8
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 1.5e-124 450.3 419 60.4
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 5.8e-124 448.4 397 61.2
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 6.4e-123 444.9 392 61.0
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 7.1e-122 441.4 339 67.6
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 9.2e-122 441.0 412 58.0
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 1.2e-121 440.7 335 67.5
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 4.6e-121 438.7 414 58.2
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 1.0e-120 437.6 422 55.9
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 1.7e-120 436.8 396 59.6
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 2.3e-120 436.4 416 57.2
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 3.0e-120 436.0 415 58.3
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 3.0e-120 436.0 419 58.7
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 8.6e-120 434.5 418 57.9
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 1.1e-119 434.1 416 57.0
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 4.3e-119 432.2 413 57.6
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 7.3e-119 431.4 413 58.6
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 7.3e-119 431.4 396 58.8
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 2.4e-117 426.4 427 58.3
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 3.1e-117 426.0 416 56.7
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 4.0e-117 425.6 411 56.2
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 8.9e-117 424.5 461 52.7
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 8.9e-117 424.5 421 57.5
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 3.4e-116 422.5 363 61.4
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 4.4e-116 422.2 415 55.9
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 1.1e-114 417.5 414 58.0
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 1.9e-114 416.8 418 54.1
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 3.2e-114 416.0 415 54.2
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 6.0e-113 411.8 439 52.2
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 1.5e-111 407.1 414 53.6
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 1.3e-110 404.1 341 62.8
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 6.2e-110 401.7 402 58.2
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 6.2e-110 401.7 368 59.5
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 1.1e-109 401.0 430 54.4
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 5.3e-109 398.7 415 55.9
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 3.4e-108 396.0 416 53.6
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 7.6e-108 394.8 410 53.4
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 7.6e-108 394.8 368 56.2
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.4e-106 390.6 316 63.9
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 1.1e-103 380.9 365 57.5
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 1.1e-103 380.9 411 52.1
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 2.5e-103 379.8 413 52.5
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 4.3e-103 379.0 360 56.4
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 4.8e-102 375.6 417 53.0
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 6.2e-102 375.2 346 57.8
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 1.4e-101 374.0 411 51.1
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 2.0e-100 370.2 332 62.7
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 2.9e-99 366.3 413 52.1
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 1.4e-98 364.0 410 51.2
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 2.4e-98 363.2 351 54.7
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 7.9e-97 358.2 411 49.9
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 7.9e-97 358.2 414 51.7
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 1.0e-96 357.8 392 53.1
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 8.7e-96 354.8 425 50.6
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 1.1e-95 354.4 415 51.1
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 7.4e-95 351.7 415 50.6
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 7.4e-95 351.7 412 50.0
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.6e-94 350.5 413 48.9
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 4.8e-94 349.0 415 50.4
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 6.2e-94 348.6 413 51.1
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 1.1e-93 347.8 441 47.4
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 1.1e-93 347.8 427 50.1
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 1.4e-93 347.4 415 50.1
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 2.4e-93 346.7 415 50.1
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 4.0e-93 345.9 419 48.2
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 1.2e-92 344.4 418 47.4
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 7.4e-87 325.1 381 49.3
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 1.6e-86 323.9 414 48.3
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 1.6e-86 323.9 411 48.2
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 3.7e-86 322.8 394 50.0
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 1.3e-83 314.3 250 64.8
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 3.0e-80 303.1 421 46.1
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.9e-80 302.8 196 76.0
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 2.0e-76 290.4 420 44.8
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 4.5e-76 289.3 426 45.1
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 1.9e-74 283.9 243 60.1
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 4.3e-71 272.7 168 78.0
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 3.1e-69 266.5 316 47.8
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 4.2e-66 256.1 333 45.3
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 6.7e-64 248.8 191 66.0
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 5.5e-50 202.6 333 37.8
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 4.0e-48 196.4 312 39.1
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 5.4e-45 186.0 111 78.4
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 7.7e-44 182.2 331 36.3
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.2e-43 180.6 111 74.8
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 3.2e-42 176.8 134 68.7
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 1.2e-41 174.9 378 32.0
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 2.3e-40 170.6 168 59.5
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 2.0e-39 167.5 175 57.1
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 1.1e-34 151.8 149 57.7
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.9e-34 151.0 140 57.1
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 4.0e-32 143.3 224 42.0
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.4e-29 134.8 123 56.9
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 5.9e-28 129.4 104 61.5
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 3.1e-24 117.1 166 43.4
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.0e-24 116.7 77 70.1
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 8.3e-22 109.0 61 80.3
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 5.4e-21 106.3 118 51.7
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.0e-20 104.4 61 77.0
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 1.0e-19 102.1 169 38.5
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 1.5e-18 98.2 56 80.4
CDE02G3657 Ceratophyllum demersum HOM05D006199 ORTHO05D006558 1.2e-15 88.6 97 50.5
Cre07.g351400 Chlamydomonas reinhardtii HOM05D006199 ORTHO05D006558 2.7e-12 77.4 173 29.5
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 4.6e-12 76.6 162 31.5
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 5.6e-10 69.7 80 50.0
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 1.8e-08 64.7 48 64.6
FvH4_4g05800 Fragaria vesca HOM05D006199 ORTHO05D006558 2.3e-08 64.3 48 62.5
Duzib248G0391 Durio zibethinus HOM05D006199 ORTHO05D006558 2.0e-07 61.2 59 52.5


User provided reference genes

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