Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 3.5e-138 495.0 256 100.0
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 1.6e-101 373.2 275 72.7
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 5.9e-101 371.3 275 72.0
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 1.6e-98 363.2 275 70.9
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.4e-97 360.1 275 69.5
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 4.0e-97 358.6 275 69.1
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 3.7e-95 352.1 275 68.7
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 2.7e-93 345.9 275 66.2
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 4.5e-93 345.1 275 66.9
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 4.5e-93 345.1 273 67.0
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 7.7e-93 344.4 275 67.6
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 2.3e-92 342.8 275 67.6
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 2.3e-92 342.8 275 65.8
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 8.6e-92 340.9 276 65.6
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.5e-91 340.1 275 67.3
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 5.5e-91 338.2 276 67.4
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 9.5e-91 337.4 274 65.7
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 1.6e-90 336.7 275 65.8
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 1.0e-89 334.0 275 66.2
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 1.8e-89 333.2 275 66.2
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 1.2e-88 330.5 275 66.5
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 1.5e-88 330.1 277 63.9
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.0e-88 329.7 275 64.7
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 2.0e-88 329.7 275 65.5
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 2.6e-88 329.3 275 63.6
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 3.4e-88 328.9 276 64.5
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 4.4e-88 328.6 275 65.1
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 5.7e-88 328.2 312 60.3
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 1.3e-87 327.0 276 64.5
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 2.2e-87 326.2 275 65.1
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 1.8e-86 323.2 275 63.3
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.8e-86 323.2 264 63.6
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 1.2e-85 320.5 261 65.9
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 5.9e-85 318.2 274 63.5
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 7.8e-85 317.8 273 64.8
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 8.6e-84 314.3 273 61.9
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.9e-83 313.2 277 63.9
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 2.5e-83 312.8 276 63.0
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 5.6e-83 311.6 273 60.8
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 7.3e-83 311.2 275 60.7
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 7.3e-83 311.2 277 61.4
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 9.5e-83 310.8 273 62.3
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 1.2e-82 310.5 276 61.6
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 1.6e-82 310.1 275 60.7
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 2.1e-82 309.7 276 61.6
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 2.8e-82 309.3 276 60.9
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 3.6e-82 308.9 275 61.1
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 4.7e-82 308.5 259 64.1
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 6.1e-82 308.1 274 60.6
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 1.0e-81 307.4 275 61.8
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 1.0e-81 307.4 255 64.7
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 1.0e-81 307.4 276 60.5
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 1.4e-81 307.0 273 63.4
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 2.3e-81 306.2 278 59.7
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 4.0e-81 305.4 256 63.3
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 4.0e-81 305.4 229 69.9
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 6.8e-81 304.7 291 58.1
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 8.9e-81 304.3 252 63.5
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 1.5e-80 303.5 274 63.1
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 5.8e-80 301.6 278 60.8
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 1.7e-79 300.1 275 59.6
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 2.9e-79 299.3 276 59.8
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 3.7e-79 298.9 234 68.4
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 3.7e-79 298.9 254 63.8
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 4.9e-79 298.5 265 63.4
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 6.4e-79 298.1 274 58.4
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 1.1e-78 297.4 276 59.1
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 1.1e-78 297.4 277 58.1
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 1.9e-78 296.6 295 56.9
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 2.4e-78 296.2 224 67.4
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 2.4e-78 296.2 265 59.2
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 5.4e-78 295.0 276 58.7
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 5.4e-78 295.0 276 59.1
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 7.0e-78 294.7 237 65.4
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 9.2e-78 294.3 261 61.3
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 1.2e-77 293.9 260 62.3
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 1.6e-77 293.5 260 62.7
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.6e-77 293.5 263 60.5
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 3.5e-77 292.4 249 64.7
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 3.5e-77 292.4 277 59.2
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 3.5e-77 292.4 257 63.0
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 1.0e-76 290.8 276 58.3
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.0e-76 290.8 276 58.3
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.0e-76 290.8 271 57.6
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.3e-76 290.4 276 58.7
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 1.3e-76 290.4 255 60.4
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 1.7e-76 290.0 238 64.7
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 3.0e-76 289.3 276 58.0
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 3.0e-76 289.3 235 63.8
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 3.9e-76 288.9 263 58.6
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 5.0e-76 288.5 361 48.5
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 6.6e-76 288.1 261 60.2
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 1.5e-75 287.0 274 58.0
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.5e-75 287.0 260 59.6
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 1.5e-75 287.0 275 57.8
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 2.5e-75 286.2 213 70.0
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 4.3e-75 285.4 276 57.2
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 4.3e-75 285.4 234 65.0
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 7.3e-75 284.6 263 57.4
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 9.5e-75 284.3 268 57.5
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 1.2e-74 283.9 266 57.9
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 1.2e-74 283.9 276 56.9
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 1.2e-74 283.9 275 57.1
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.6e-74 283.5 263 61.2
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 2.1e-74 283.1 276 57.2
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 6.2e-74 281.6 253 60.9
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 8.0e-74 281.2 242 64.0
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 8.9e-73 277.7 275 56.0
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 8.9e-73 277.7 275 57.5
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 8.9e-73 277.7 258 57.0
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 8.9e-73 277.7 258 58.1
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 1.5e-72 276.9 275 56.7
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 2.0e-72 276.6 275 56.7
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 5.8e-72 275.0 288 54.5
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 5.8e-72 275.0 256 57.0
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 7.5e-72 274.6 289 54.3
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.7e-71 273.5 310 51.9
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 1.4e-70 270.4 212 67.9
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 9.2e-70 267.7 213 66.7
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 3.5e-69 265.8 259 57.9
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 4.6e-69 265.4 213 66.2
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 6.0e-69 265.0 345 48.4
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 5.1e-68 261.9 272 54.0
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 1.5e-67 260.4 210 67.1
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 2.8e-66 256.1 260 56.5
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 6.2e-66 255.0 259 56.4
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 1.4e-65 253.8 248 54.8
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.1e-65 252.7 303 48.2
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 1.2e-64 250.8 260 52.7
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.4e-64 249.2 254 53.9
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 5.8e-64 248.4 204 64.2
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 5.8e-64 248.4 272 54.8
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.1e-62 244.2 275 54.9
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 6.0e-61 238.4 205 61.5
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 1.0e-60 237.7 138 82.6
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 2.1e-58 229.9 252 53.2
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 2.8e-58 229.6 276 48.6
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 8.1e-58 228.0 210 59.5
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 8.9e-57 224.6 234 53.8
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 8.9e-57 224.6 209 56.0
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 4.4e-56 222.2 252 51.2
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 1.1e-54 217.6 252 50.0
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.9e-54 216.9 184 65.2
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 4.2e-54 215.7 198 62.6
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 8.7e-52 208.0 252 46.0
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 9.9e-48 194.5 257 47.1
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.8e-47 192.6 179 60.9
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 1.3e-44 184.1 257 43.2
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 6.6e-44 181.8 206 52.9
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 2.8e-42 176.4 234 44.0
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 5.8e-40 168.7 104 76.9
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 7.1e-38 161.8 147 62.6
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 4.6e-37 159.1 253 39.1
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.4e-30 137.5 165 51.5
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.1e-25 121.3 143 50.3
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.1e-25 121.3 186 44.1
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 7.6e-24 115.2 144 52.8
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.7e-23 114.0 122 54.9
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 6.7e-20 102.1 160 40.0
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 8.7e-20 101.7 66 66.7
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.5e-19 100.9 87 60.9
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 1.9e-19 100.5 103 53.4
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 1.9e-19 100.5 103 53.4
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 2.2e-18 97.1 103 55.3
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 2.8e-18 96.7 233 34.3
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.3e-15 87.8 64 70.3
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 7.9e-13 78.6 69 59.4
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 2.2e-10 70.5 76 47.4
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.1e-09 66.2 68 51.5
Rhsim11G0185500 Rhododendron simsii HOM05D004157 ORTHO05D004860 7.7e-08 62.0 67 46.3
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 6.5e-07 58.9 62 50.0
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 2.5e-06 57.0 35 80.0


User provided reference genes

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