Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 0.0e+00 1424.5 1060 100.0
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 8.2e-298 1027.3 1079 75.1
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 1.2e-243 847.4 1088 67.7
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 4.4e-243 845.5 1088 68.7
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 7.6e-243 844.7 1104 69.0
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 3.5e-240 835.9 1088 72.8
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 5.6e-238 828.6 1088 71.7
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.6e-237 827.0 1088 71.6
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 4.3e-190 669.5 1123 60.5
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 2.8e-181 640.2 1141 58.2
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 1.1e-180 638.3 1174 56.6
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 9.4e-177 625.2 1156 52.3
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 2.6e-171 607.1 1151 50.3
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 1.6e-168 597.8 1119 60.7
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.2e-160 571.6 1141 53.7
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 1.0e-159 568.5 1108 55.1
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 2.8e-157 560.5 1183 45.9
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 6.3e-157 559.3 1133 51.4
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 2.4e-156 557.4 1095 53.6
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 5.4e-156 556.2 1121 59.1
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 1.2e-155 555.1 1134 55.0
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 2.1e-152 544.3 1141 58.0
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 3.6e-152 543.5 1142 53.4
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 8.0e-152 542.3 982 63.0
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 1.8e-151 541.2 1148 53.7
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 5.2e-151 539.7 1141 57.8
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 1.2e-150 538.5 1125 49.8
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 2.2e-149 534.3 1071 57.0
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 4.9e-149 533.1 1109 57.1
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 1.1e-148 531.9 1112 58.6
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 1.4e-148 531.6 1141 57.5
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 1.4e-148 531.6 1132 49.5
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 1.2e-147 528.5 1151 56.0
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 3.5e-147 526.9 1137 52.5
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 1.7e-146 524.6 1125 54.0
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 8.9e-143 512.3 1149 57.2
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 2.6e-142 510.8 1100 52.9
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 5.8e-142 509.6 1125 48.2
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 1.7e-141 508.1 1130 53.5
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 1.4e-140 505.0 1099 58.0
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 3.2e-140 503.8 1124 56.4
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 9.2e-140 502.3 1128 54.0
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 3.0e-138 497.3 1116 52.6
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 1.9e-137 494.6 1103 56.8
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 7.3e-137 492.7 1140 53.9
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 9.5e-137 492.3 1141 56.5
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 2.8e-136 490.7 1109 48.2
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 3.1e-135 487.3 942 59.7
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 4.4e-134 483.4 1159 57.2
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 5.8e-134 483.0 1107 56.6
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 5.8e-134 483.0 1210 45.9
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 8.3e-133 479.2 709 76.4
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 2.7e-131 474.2 1082 57.4
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 5.6e-129 466.5 1202 44.9
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 7.3e-129 466.1 1188 49.8
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 7.3e-129 466.1 1111 49.1
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 1.2e-128 465.3 1189 49.8
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 2.8e-128 464.2 817 56.7
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 2.3e-127 461.1 812 69.1
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 6.8e-127 459.5 810 68.5
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 2.0e-126 458.0 1127 53.2
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 4.4e-126 456.8 1123 51.6
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 7.6e-126 456.1 1103 52.2
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 4.9e-125 453.4 1131 54.4
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 9.2e-124 449.1 843 66.5
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 6.0e-123 446.4 1078 55.8
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 7.8e-123 446.0 1065 51.5
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 1.7e-122 444.9 1139 50.2
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 1.9e-121 441.4 1141 52.6
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 3.3e-121 440.7 1107 54.7
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 5.6e-121 439.9 739 71.4
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 1.2e-120 438.7 828 67.0
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 8.1e-120 436.0 1109 51.2
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 2.4e-119 434.5 1123 50.1
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 3.1e-119 434.1 1123 51.7
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 8.9e-119 432.6 825 61.0
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 3.4e-118 430.6 1146 52.7
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 2.2e-117 427.9 1151 52.4
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 2.9e-117 427.6 1094 50.8
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 2.7e-115 421.0 808 59.2
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 7.8e-115 419.5 1158 51.5
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 8.7e-114 416.0 1129 52.5
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 1.1e-113 415.6 1125 48.9
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 1.5e-113 415.2 1156 51.4
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 2.8e-112 411.0 827 53.1
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 4.8e-112 410.2 694 64.4
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 4.0e-111 407.1 606 70.8
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 9.0e-111 406.0 1079 44.5
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 4.2e-108 397.1 851 62.9
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 9.3e-108 396.0 775 48.8
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 3.1e-103 380.9 793 57.6
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 5.8e-102 376.7 729 56.5
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.3e-85 322.4 758 54.5
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 3.8e-85 320.9 697 56.0
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 7.2e-84 316.6 1026 54.4
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 1.0e-74 286.2 258 55.4
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 7.4e-73 280.0 688 46.4
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 1.6e-62 245.7 165 73.9
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 5.9e-54 217.2 285 45.6
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.4e-50 206.1 707 48.8
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 3.0e-50 204.9 707 53.3
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 1.7e-45 189.1 662 44.7
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 3.2e-44 184.9 122 73.8
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 1.6e-43 182.6 690 60.0
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 3.6e-43 181.4 719 43.0
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 5.7e-41 174.1 238 43.3
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 9.8e-41 173.3 282 37.9
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 9.5e-36 156.8 835 51.5
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 3.0e-34 151.8 302 62.3
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 4.0e-34 151.4 279 38.0
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 9.8e-33 146.7 128 60.9
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 1.3e-32 146.4 119 63.9
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 8.3e-32 143.7 121 55.4
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 3.5e-30 138.3 107 66.4
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 1.0e-29 136.7 319 32.6
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 2.8e-27 128.6 125 55.2
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.4e-26 126.3 109 54.1
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 3.4e-25 121.7 120 52.5
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 3.7e-24 118.2 217 75.6
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.1e-23 116.7 237 30.8
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 8.6e-21 107.1 93 52.7
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 1.1e-15 90.1 245 31.4
QL11p047023 Quercus lobata HOM05D005996 ORTHO05D007507 6.6e-13 80.9 109 53.2
MBI09_g46961_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 8.4e-08 63.9 37 78.4
SEGI_16644 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 1.6e-06 59.7 42 66.7


User provided reference genes

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