Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 1.6e-283 978.8 521 100.0
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 2.9e-203 712.2 521 75.6
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 1.2e-180 637.1 525 68.8
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.3e-176 622.9 539 68.5
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 6.9e-173 611.3 535 68.2
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 6.9e-173 611.3 535 68.2
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.2e-172 610.5 538 67.5
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 8.2e-166 587.8 572 62.4
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 8.5e-163 577.8 480 71.7
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 5.2e-136 488.8 553 57.3
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 2.7e-129 466.5 539 56.2
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 2.6e-127 459.9 533 57.6
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 4.8e-126 455.7 539 56.2
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 4.4e-119 432.6 531 55.0
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 1.6e-116 424.1 541 51.0
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 6.1e-113 412.1 531 52.7
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 8.0e-113 411.8 535 49.7
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 7.5e-111 405.2 529 53.5
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 1.6e-108 397.5 565 49.2
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 7.8e-108 395.2 546 49.3
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 1.9e-106 390.6 537 51.6
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 2.5e-106 390.2 532 51.5
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.6e-105 387.5 548 47.6
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 4.7e-105 386.0 533 51.2
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 2.3e-104 383.6 527 47.1
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 1.2e-103 381.3 523 49.3
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 2.9e-102 376.7 562 47.3
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 3.7e-102 376.3 532 47.9
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 8.3e-102 375.2 569 45.9
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 4.3e-98 362.8 532 49.1
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.1e-96 356.7 540 46.1
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 5.2e-96 355.9 542 46.7
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 2.6e-95 353.6 534 48.1
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 1.3e-94 351.3 554 45.8
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 4.9e-94 349.4 532 47.4
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 2.7e-92 343.6 532 46.6
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 1.3e-91 341.3 469 53.3
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 5.1e-91 339.3 517 48.7
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 5.1e-91 339.3 534 44.8
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 6.6e-91 339.0 517 48.7
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 3.3e-90 336.7 532 46.8
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 6.2e-89 332.4 611 40.1
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 6.2e-89 332.4 617 41.5
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 2.4e-88 330.5 538 46.5
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 1.5e-87 327.8 549 42.1
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 2.2e-86 323.9 521 44.1
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 3.8e-86 323.2 610 41.6
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 6.4e-86 322.4 567 42.7
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 4.2e-85 319.7 561 42.2
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 7.8e-84 315.5 621 40.9
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 2.3e-83 313.9 535 44.9
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 1.4e-80 304.7 540 43.3
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 1.8e-80 304.3 565 42.5
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 4.0e-80 303.1 615 39.0
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 6.9e-80 302.4 533 43.5
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 3.8e-78 296.6 538 42.0
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 2.5e-74 283.9 565 42.1
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 3.1e-72 276.9 529 39.5
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 3.4e-71 273.5 526 40.1
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 1.7e-70 271.2 530 40.0
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 2.2e-70 270.8 451 45.7
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 3.8e-70 270.0 524 39.9
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 6.4e-70 269.2 521 40.7
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 1.1e-69 268.5 530 40.2
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.9e-69 267.7 529 39.5
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 7.1e-69 265.8 512 41.4
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 1.0e-67 261.9 529 42.3
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 1.8e-67 261.2 532 37.2
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 5.1e-67 259.6 516 39.5
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 1.1e-66 258.5 528 39.4
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 1.1e-66 258.5 533 38.1
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 1.5e-66 258.1 535 39.6
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 2.5e-66 257.3 518 40.7
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 2.5e-66 257.3 557 37.3
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 7.4e-66 255.8 552 37.3
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 2.8e-65 253.8 529 38.9
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 3.7e-65 253.4 506 40.3
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 1.8e-64 251.1 618 37.2
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 2.4e-64 250.8 532 41.2
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 1.2e-63 248.4 413 42.6
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 5.8e-63 246.1 242 56.2
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 2.2e-62 244.2 535 38.5
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.9e-62 243.0 462 41.3
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 6.5e-62 242.7 216 61.6
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.2e-61 240.4 231 57.6
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 7.1e-61 239.2 524 38.7
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 1.2e-60 238.4 525 37.0
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 3.0e-59 233.8 570 38.4
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 1.9e-58 231.1 526 39.0
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 1.9e-58 231.1 523 37.5
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 4.3e-58 229.9 514 37.2
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 5.7e-58 229.6 567 38.3
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 3.7e-57 226.9 569 37.1
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 1.4e-56 224.9 574 38.0
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 4.1e-56 223.4 525 39.4
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 2.0e-55 221.1 574 37.1
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 7.6e-55 219.2 316 45.3
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 2.9e-54 217.2 526 40.1
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 5.0e-54 216.5 526 38.2
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 1.4e-53 214.9 553 38.2
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 1.9e-53 214.5 526 40.5
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 1.9e-53 214.5 526 40.5
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 2.5e-53 214.2 631 32.0
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 4.2e-53 213.4 405 45.2
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 4.2e-53 213.4 534 36.9
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 5.5e-53 213.0 522 40.2
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 5.5e-53 213.0 553 33.3
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 1.3e-49 201.8 545 36.3
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 3.8e-46 190.3 509 36.3
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 6.1e-44 183.0 518 34.9
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 5.9e-39 166.4 524 34.9
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 1.2e-36 158.7 114 80.7
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 6.7e-35 152.9 641 30.1
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 1.1e-34 152.1 509 31.8
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 8.2e-33 146.0 92 77.2
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 7.2e-29 132.9 506 29.8
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 1.6e-28 131.7 478 33.7
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 1.8e-27 128.3 510 30.4
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 1.5e-26 125.2 513 29.6
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 1.2e-23 115.5 183 45.4
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 1.7e-22 111.7 152 48.0
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 1.8e-19 101.7 71 66.2
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 4.8e-17 93.6 56 76.8
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 9.8e-10 69.3 70 45.7
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 8.3e-09 66.2 93 44.1
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 8.3e-09 66.2 112 36.6
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 3.1e-08 64.3 71 49.3
vmacro05756 Vaccinium macrocarpon HOM05D060962 ORTHO05D005551 7.0e-08 63.2 60 48.3
Nn8g41058 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.5e-07 60.8 49 57.1
SHI04903 Sapria himalayana HOM05D004882 ORTHO05D005551 1.3e-06 58.9 38 65.8
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.3e-06 58.2 82 51.2
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 3.8e-06 57.4 64 46.9


User provided reference genes

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