Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 0.0e+00 2152.9 1103 100.0
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 0.0e+00 1777.7 1106 81.8
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1618.6 1104 75.2
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1617.4 1104 75.5
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1576.6 1104 72.8
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1575.5 1104 72.7
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1573.5 1110 72.5
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 0.0e+00 1568.9 1104 72.6
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 0.0e+00 1380.2 1131 64.5
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 0.0e+00 1349.7 1090 65.0
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 0.0e+00 1348.2 1050 66.6
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 0.0e+00 1324.3 1113 62.7
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 0.0e+00 1305.8 1120 61.2
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 0.0e+00 1293.5 1128 61.3
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 0.0e+00 1269.2 1101 62.1
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 0.0e+00 1266.9 1122 60.1
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1265.8 881 72.4
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 0.0e+00 1247.6 1102 60.6
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 0.0e+00 1236.9 1110 59.4
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 0.0e+00 1236.5 1110 59.8
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 0.0e+00 1231.5 1120 58.6
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 0.0e+00 1223.8 1105 58.2
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 0.0e+00 1222.6 1124 58.6
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 0.0e+00 1219.9 1124 58.5
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 0.0e+00 1210.3 1114 58.1
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 0.0e+00 1204.9 1123 56.7
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 0.0e+00 1198.0 1112 56.0
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 0.0e+00 1195.3 1110 56.2
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1181.8 1112 57.3
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 0.0e+00 1181.8 1119 57.2
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 0.0e+00 1174.8 1119 56.7
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 0.0e+00 1169.8 1097 56.8
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 0.0e+00 1164.4 1112 54.9
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 0.0e+00 1161.0 1109 57.3
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 0.0e+00 1149.8 1105 56.6
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1139.0 1115 55.1
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1134.8 1115 55.2
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 0.0e+00 1132.9 1044 56.3
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 0.0e+00 1117.1 1119 53.6
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 0.0e+00 1115.5 1120 55.2
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 0.0e+00 1110.5 1115 54.2
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 0.0e+00 1105.5 1104 53.5
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 0.0e+00 1088.6 1120 53.1
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 0.0e+00 1078.9 1019 57.1
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 1.5e-310 1069.7 1100 52.1
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 9.7e-310 1067.0 1094 52.2
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 1.7e-306 1056.2 1152 50.8
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 1.1e-305 1053.5 1111 51.0
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 4.2e-305 1051.6 1100 51.2
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 6.1e-304 1047.7 1142 50.7
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 6.1e-304 1047.7 1101 51.6
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 8.0e-304 1047.3 940 58.9
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 6.3e-301 1037.7 1094 51.4
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 2.4e-300 1035.8 1131 49.7
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 4.1e-300 1035.0 1130 49.7
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 5.4e-300 1034.6 1101 51.1
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 6.5e-298 1027.7 1105 49.3
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 1.5e-297 1026.5 962 58.2
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 1.2e-296 1023.5 1084 52.2
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 3.4e-294 1015.4 1110 50.5
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 9.8e-294 1013.8 1101 49.0
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 8.0e-288 994.2 946 57.4
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 7.0e-284 981.1 1061 51.8
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 5.0e-282 974.9 1108 49.9
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 5.6e-281 971.5 1129 46.9
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 3.6e-280 968.8 956 57.3
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 1.4e-276 956.8 822 60.6
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 9.2e-268 927.5 1106 47.4
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 3.0e-266 922.5 856 57.8
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 3.3e-265 919.1 1105 47.1
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 7.3e-265 917.9 1114 46.7
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 8.1e-264 914.4 1109 47.4
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 1.2e-262 910.6 1113 46.5
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 1.2e-259 900.6 982 50.2
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 5.1e-258 895.2 1172 44.5
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 5.1e-258 895.2 1129 45.6
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 1.6e-251 873.6 897 52.2
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 1.2e-246 857.4 620 70.6
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 7.1e-244 848.2 1101 44.6
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 1.6e-235 820.5 969 46.6
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 9.6e-233 811.2 1084 42.5
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 6.5e-221 771.9 735 56.7
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 1.0e-205 721.5 758 49.7
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.8e-199 700.7 807 50.3
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 3.4e-177 626.7 1111 37.5
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 3.7e-176 623.2 947 42.8
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 9.5e-172 608.6 726 46.8
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 1.6e-150 538.1 1153 32.4
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 2.5e-148 530.8 702 43.6
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 3.6e-147 526.9 1354 29.6
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.0e-141 507.3 384 67.4
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 7.1e-127 459.5 468 56.6
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 1.9e-124 451.4 445 55.5
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 3.2e-103 380.9 340 60.0
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.2e-102 379.0 1246 29.1
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 3.9e-101 374.0 344 59.3
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 2.6e-97 361.3 327 59.0
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 2.2e-96 358.2 340 56.5
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.1e-94 351.7 596 41.1
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 3.7e-83 314.3 298 57.0
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 7.0e-82 310.1 323 52.9
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 1.6e-78 298.9 291 55.7
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 8.0e-70 270.0 302 49.7
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 4.5e-65 254.2 229 61.6
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 7.5e-60 236.9 359 39.6
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 2.1e-54 218.8 261 48.7
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 5.6e-47 194.1 391 35.3
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 2.8e-46 191.8 201 51.7
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 4.7e-46 191.0 296 40.2
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 3.1e-45 188.3 184 53.3
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 1.1e-42 179.9 312 39.1
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 1.4e-42 179.5 171 52.6
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 3.5e-41 174.9 168 51.8
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 4.6e-41 174.5 137 64.2
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 3.9e-40 171.4 127 70.1
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 5.1e-40 171.0 195 45.6
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.1e-39 169.9 499 29.5
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 6.6e-32 144.1 457 27.6
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 4.3e-31 141.4 110 64.5
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.8e-30 138.7 126 60.3
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 4.7e-30 137.9 110 63.6
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 4.0e-21 108.2 137 43.8
FAN26G1840 Fragaria x ananassa HOM05D005711 ORTHO05D007125 5.3e-21 107.8 135 45.9
Nitab4.5_0010669g0030 Nicotiana tabacum HOM05D005711 ORTHO05D007125 2.4e-18 99.0 161 40.4
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 1.4e-13 83.2 429 22.8
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 5.8e-12 77.8 87 44.8
Rhsim03G0016400 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.3e-11 76.6 99 47.5
FAN04G1389 Fragaria x ananassa HOM05D005711 ORTHO05D007125 7.1e-10 70.9 48 64.6
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 1.6e-09 69.7 96 42.7
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 3.5e-09 68.6 61 55.7
BolC4t25036H Brassica oleracea HOM05D005711 ORTHO05D040726 3.5e-09 68.6 138 37.0
Thecc.05G161000 Theobroma cacao HOM05D005711 ORTHO05D007125 2.3e-08 65.9 42 71.4
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 4.8e-06 58.2 47 61.7


User provided reference genes

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