Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 2.2e-82 309.3 206 100.0
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 6.5e-50 201.4 223 68.2
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 1.6e-48 196.8 231 67.1
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 1.3e-45 187.2 204 69.6
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 8.2e-45 184.5 204 65.2
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 1.8e-44 183.3 207 63.3
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.6e-43 180.3 208 54.8
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 5.9e-43 178.3 207 60.4
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 1.7e-42 176.8 208 57.7
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 1.5e-41 173.7 225 58.7
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 4.2e-41 172.2 135 68.1
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 5.5e-41 171.8 204 67.2
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 9.4e-41 171.0 206 53.9
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 1.2e-40 170.6 205 62.9
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.6e-40 170.2 206 55.8
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 1.6e-40 170.2 135 69.6
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 2.1e-40 169.9 204 64.2
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 3.6e-40 169.1 208 63.0
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 3.6e-40 169.1 204 68.1
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 8.0e-40 167.9 206 58.3
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 8.8e-39 164.5 206 57.8
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 2.6e-38 162.9 207 62.3
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 7.5e-38 161.4 206 59.7
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 7.5e-38 161.4 209 62.2
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 7.5e-38 161.4 205 59.5
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 1.3e-37 160.6 136 67.6
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 2.2e-37 159.8 205 60.5
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 8.3e-37 157.9 128 64.1
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.1e-36 157.5 129 64.3
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 1.1e-36 157.5 206 56.8
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 1.4e-36 157.1 207 53.1
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 1.4e-36 157.1 204 57.8
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 1.8e-36 156.8 206 62.6
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 2.4e-36 156.4 201 59.2
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 3.1e-36 156.0 131 64.9
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 5.4e-36 155.2 136 65.4
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 7.0e-36 154.8 136 64.0
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 2.0e-35 153.3 133 63.2
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 2.7e-35 152.9 204 55.9
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 3.5e-35 152.5 131 63.4
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 3.5e-35 152.5 130 64.6
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 1.0e-34 151.0 133 63.9
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 3.8e-34 149.1 135 60.7
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 3.8e-34 149.1 133 63.9
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 3.8e-34 149.1 206 57.8
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 5.0e-34 148.7 115 71.3
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 1.1e-33 147.5 135 62.2
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 1.5e-33 147.1 132 62.9
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 3.3e-33 146.0 206 56.8
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 7.2e-33 144.8 131 60.3
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 7.2e-33 144.8 126 65.1
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 9.5e-33 144.4 209 55.5
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 1.2e-32 144.1 206 52.9
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.2e-32 144.1 135 57.0
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.1e-32 143.3 131 59.5
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 4.7e-32 142.1 139 58.3
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 4.7e-32 142.1 134 53.7
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 4.7e-32 142.1 133 60.9
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 1.0e-31 141.0 213 53.1
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 1.4e-31 140.6 131 58.8
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 4.0e-31 139.0 205 47.3
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 5.2e-31 138.7 207 48.8
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 6.8e-31 138.3 207 46.9
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 8.9e-31 137.9 204 50.0
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.2e-30 137.5 203 48.3
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 1.2e-30 137.5 208 57.7
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 2.0e-30 136.7 135 57.0
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 2.6e-30 136.3 184 54.3
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 9.8e-30 134.4 210 57.1
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 4.9e-29 132.1 136 55.9
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 6.3e-29 131.7 204 49.5
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 8.3e-29 131.3 131 57.3
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.1e-28 131.0 132 59.8
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 1.1e-28 131.0 133 57.9
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 1.8e-28 130.2 114 59.6
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 3.1e-28 129.4 137 57.7
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 3.1e-28 129.4 137 57.7
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 5.4e-28 128.6 186 54.3
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 5.4e-28 128.6 217 45.2
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 5.4e-28 128.6 134 58.2
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.0e-27 126.7 135 59.3
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 4.5e-27 125.6 211 49.3
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 4.5e-27 125.6 205 50.7
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.3e-26 123.2 133 56.4
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 2.9e-26 122.9 211 49.8
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 3.8e-26 122.5 201 52.2
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 5.0e-26 122.1 204 52.9
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 8.6e-26 121.3 130 56.2
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 8.6e-26 121.3 125 55.2
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 1.9e-25 120.2 136 56.6
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 4.3e-25 119.0 216 44.4
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 4.3e-25 119.0 136 56.6
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 4.3e-25 119.0 117 59.8
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 1.6e-24 117.1 124 54.0
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 4.7e-24 115.5 150 57.3
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 6.1e-24 115.2 122 53.3
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 6.1e-24 115.2 122 53.3
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 6.1e-24 115.2 122 53.3
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 6.1e-24 115.2 138 52.9
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.0e-23 114.4 132 53.0
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 1.4e-23 114.0 138 52.2
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.8e-23 113.6 131 55.0
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 2.3e-23 113.2 128 50.8
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 3.0e-23 112.8 127 52.0
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 4.0e-23 112.5 96 65.6
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 2.0e-22 110.2 122 51.6
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 2.0e-22 110.2 148 66.2
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 3.4e-22 109.4 136 52.9
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 7.5e-22 108.2 194 55.2
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 9.8e-22 107.8 122 52.5
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 9.8e-22 107.8 122 52.5
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 1.3e-21 107.5 131 50.4
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 1.7e-21 107.1 131 51.9
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.7e-21 107.1 122 52.5
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 2.9e-21 106.3 77 74.0
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 3.7e-21 105.9 210 45.2
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 8.3e-21 104.8 122 50.0
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 8.3e-21 104.8 122 50.0
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 8.3e-21 104.8 137 51.1
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 1.8e-20 103.6 120 50.0
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 3.2e-20 102.8 83 67.5
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 7.0e-20 101.7 163 54.0
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 9.2e-20 101.3 123 50.4
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 9.2e-20 101.3 123 50.4
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.2e-19 100.9 123 48.8
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 1.6e-19 100.5 125 49.6
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 7.8e-19 98.2 73 67.1
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.3e-18 97.4 72 66.7
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 1.3e-18 97.4 126 47.6
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 1.3e-18 97.4 138 46.4
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 3.0e-18 96.3 128 46.1
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 8.6e-18 94.7 121 48.8
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 1.2e-16 90.9 130 44.6
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 1.6e-16 90.5 258 39.5
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 1.6e-16 90.5 130 43.8
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 1.6e-16 90.5 130 43.8
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 2.1e-16 90.1 134 43.3
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 3.6e-16 89.4 60 75.0
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 4.7e-16 89.0 63 73.0
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 6.2e-16 88.6 139 60.4
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 1.7e-13 80.5 66 68.2
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 1.7e-13 80.5 146 41.8
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 7.0e-12 75.1 123 42.3
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 9.2e-12 74.7 55 72.7
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.0e-11 73.6 53 73.6
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 6.6e-10 68.6 46 73.9
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 1.1e-09 67.8 123 39.0
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.9e-09 67.0 53 67.9
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 4.3e-09 65.9 81 49.4
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 4.3e-09 65.9 53 67.9
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 2.6e-06 56.6 71 46.5


User provided reference genes

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