Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 1.3e-169 599.7 325 100.0
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 1.4e-144 516.5 342 86.8
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 8.4e-60 235.0 379 47.5
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 8.4e-60 235.0 379 47.5
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.2e-59 233.0 355 50.7
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 5.4e-59 232.3 349 53.9
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 9.3e-59 231.5 355 50.7
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.0e-57 228.0 353 49.6
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.8e-57 227.3 353 51.6
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 3.6e-55 219.5 356 47.8
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.2e-55 218.8 353 49.0
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 4.2e-51 206.1 343 45.8
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 1.6e-50 204.1 383 42.8
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 7.9e-50 201.8 365 41.6
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 1.0e-49 201.4 357 43.1
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.8e-49 200.7 399 39.8
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 2.3e-49 200.3 354 42.9
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 2.5e-48 196.8 334 45.5
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.5e-48 196.8 342 43.3
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 4.3e-48 196.1 466 37.3
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 1.6e-47 194.1 342 42.7
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 2.1e-47 193.7 400 43.0
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 9.0e-46 188.3 326 43.9
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 1.2e-45 188.0 347 42.7
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 8.4e-44 181.8 305 45.2
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 8.4e-44 181.8 291 43.6
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 7.1e-43 178.7 365 40.3
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 9.3e-43 178.3 293 43.3
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 1.6e-42 177.6 399 38.8
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 1.0e-41 174.9 403 38.2
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 3.0e-41 173.3 321 42.4
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 3.9e-41 172.9 307 48.2
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 5.1e-41 172.6 314 42.4
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 6.7e-41 172.2 364 39.8
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 1.1e-40 171.4 354 39.3
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 1.3e-39 167.9 377 40.8
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.8e-39 166.8 262 45.8
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 2.8e-39 166.8 392 38.8
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 3.7e-39 166.4 283 44.9
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.8e-38 164.1 337 39.2
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 3.1e-38 163.3 265 45.7
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 4.1e-38 162.9 341 39.6
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 6.9e-38 162.2 377 37.4
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 2.0e-37 160.6 357 38.9
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 2.0e-37 160.6 297 43.8
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.4e-37 159.8 265 44.9
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 7.6e-37 158.7 290 43.4
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 2.2e-36 157.1 339 37.2
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 2.9e-36 156.8 320 41.2
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 9.3e-35 151.8 334 38.3
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 9.3e-35 151.8 311 39.5
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 1.2e-34 151.4 301 42.5
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 2.1e-34 150.6 307 41.0
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.1e-34 150.6 286 40.2
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 2.7e-34 150.2 300 39.0
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 3.6e-34 149.8 301 40.5
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 3.6e-34 149.8 327 38.5
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 7.9e-34 148.7 340 38.5
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 2.3e-33 147.1 288 41.3
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 2.3e-33 147.1 345 36.2
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 3.9e-33 146.4 349 36.7
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 1.1e-32 144.8 284 39.1
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 1.9e-32 144.1 381 36.7
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 2.5e-32 143.7 288 44.4
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 4.3e-32 142.9 293 42.3
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 7.4e-32 142.1 294 41.2
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 1.6e-31 141.0 286 38.5
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 1.1e-30 138.3 282 39.0
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.4e-30 137.9 333 38.7
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 4.1e-30 136.3 310 41.6
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 9.1e-30 135.2 270 41.1
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 1.5e-29 134.4 323 37.5
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.0e-29 134.0 324 37.0
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.0e-28 131.7 294 41.5
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 1.0e-28 131.7 381 37.3
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 1.3e-28 131.3 332 37.3
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 2.2e-28 130.6 274 39.8
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 8.5e-28 128.6 262 40.1
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 1.4e-27 127.9 261 40.6
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 1.9e-27 127.5 274 39.8
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 4.2e-27 126.3 261 38.3
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 4.2e-27 126.3 261 38.3
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 1.6e-26 124.4 317 38.8
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 2.1e-26 124.0 386 35.2
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 2.1e-26 124.0 267 38.6
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 2.7e-26 123.6 250 42.4
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 7.9e-26 122.1 314 36.3
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 1.4e-25 121.3 229 39.7
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 1.8e-25 120.9 305 37.0
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 8.8e-25 118.6 293 37.5
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 8.8e-25 118.6 267 38.6
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 2.0e-24 117.5 214 39.3
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 2.0e-24 117.5 214 39.3
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 2.0e-24 117.5 214 39.3
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 3.3e-24 116.7 256 39.8
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 3.3e-24 116.7 263 40.3
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 4.4e-24 116.3 253 39.9
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 5.7e-24 115.9 203 41.9
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 2.2e-23 114.0 260 40.0
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 2.2e-23 114.0 306 37.6
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 2.2e-23 114.0 239 39.3
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 2.8e-23 113.6 239 39.3
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 3.7e-23 113.2 255 39.6
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.8e-22 110.9 248 41.1
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 3.1e-22 110.2 265 37.4
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 9.1e-22 108.6 199 42.7
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 1.2e-21 108.2 266 39.8
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 2.0e-21 107.5 263 37.3
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 2.0e-21 107.5 264 37.5
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 5.9e-21 105.9 126 54.0
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 1.0e-20 105.1 264 35.6
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 2.2e-20 104.0 258 38.0
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 1.9e-19 100.9 266 36.1
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 2.5e-19 100.5 264 36.7
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 3.2e-19 100.1 216 42.1
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.2e-19 99.8 123 52.8
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 1.2e-18 98.2 250 37.2
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 1.2e-18 98.2 186 41.9
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 1.6e-18 97.8 265 35.8
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 1.0e-17 95.1 280 37.1
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 5.2e-17 92.8 187 41.7
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 3.3e-16 90.1 219 37.0
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 4.4e-16 89.7 231 36.8
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 7.4e-16 89.0 267 36.0
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 1.3e-15 88.2 212 37.3
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 3.7e-15 86.7 278 34.2
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 1.6e-13 81.3 268 32.5
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 2.0e-13 80.9 79 57.0
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 3.5e-13 80.1 175 40.6
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 5.9e-13 79.3 180 37.2
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 1.0e-12 78.6 184 38.6
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 6.5e-12 75.9 268 32.5
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 6.5e-12 75.9 203 33.0
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 6.5e-12 75.9 220 36.8
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 1.1e-11 75.1 159 40.9
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 1.5e-11 74.7 159 41.5
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 1.9e-11 74.3 187 35.3
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 3.2e-11 73.6 196 37.8
Gohir.D10G066500 Gossypium hirsutum HOM05D008208 ORTHO05D010143 4.2e-11 73.2 196 37.8
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 4.2e-11 73.2 170 37.6
Zm00001eb217550 Zea mays HOM05D058439 ORTHO05D005166 2.7e-10 70.5 188 36.2
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 6.1e-10 69.3 186 35.5
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 6.1e-10 69.3 176 38.1
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 6.1e-10 69.3 277 32.1
Sc10g0007610 Simmondsia chinensis HOM05D008208 ORTHO05D010143 8.8e-09 65.5 187 36.4
ATR0705G064 Amborella trichopoda HOM05D008208 ORTHO05D010143 1.5e-08 64.7 209 31.6
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 1.5e-08 64.7 107 42.1
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 1.5e-08 64.7 154 35.1
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 2.6e-08 63.9 236 32.2
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 2.6e-08 63.9 154 34.4
TAR624G0194 Trochodendron aralioides HOM05D008208 ORTHO05D010143 2.6e-08 63.9 199 33.2
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 3.3e-08 63.5 202 32.7
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 3.3e-08 63.5 154 34.4
MD17G1181700 Malus domestica HOM05D008208 ORTHO05D010143 3.3e-08 63.5 155 37.4
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 9.7e-08 62.0 152 34.2
CSS0033280 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 1.3e-07 61.6 202 33.2
Lj9A514T51 Lonicera japonica HOM05D008208 ORTHO05D010143 2.2e-07 60.8 200 31.0
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 2.2e-07 60.8 185 32.4
Peaxi162Scf00038g01129 Petunia axillaris HOM05D008208 ORTHO05D010143 2.8e-07 60.5 204 30.9
Actinidia39131 Actinidia chinensis HOM05D008208 ORTHO05D010143 4.8e-07 59.7 258 30.2
Prupe.3G057400 Prunus persica HOM05D008208 ORTHO05D010143 4.8e-07 59.7 170 37.6
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 6.3e-07 59.3 189 33.9
QL05p019674 Quercus lobata HOM05D008208 ORTHO05D010143 6.3e-07 59.3 201 34.3
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 1.1e-06 58.5 187 30.5
COL.COLO4_30526 Corchorus olitorius HOM05D008208 ORTHO05D010143 1.1e-06 58.5 200 33.5
Nn8g39048 Nelumbo nucifera HOM05D008208 ORTHO05D010143 1.1e-06 58.5 188 33.0
CDE02G2770 Ceratophyllum demersum HOM05D046919 ORTHO05D043903 1.4e-06 58.2 176 34.1
Manes.11G032600 Manihot esculenta HOM05D008208 ORTHO05D010143 1.4e-06 58.2 184 32.1
Actinidia09010 Actinidia chinensis HOM05D008208 ORTHO05D010143 5.3e-06 56.2 258 28.7
MSTRG.11020 Avicennia marina HOM05D008208 ORTHO05D010143 5.3e-06 56.2 229 28.8
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 5.3e-06 56.2 198 29.3
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 5.3e-06 56.2 216 30.1


User provided reference genes

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