Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 3.7e-103 378.3 195 100.0
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 2.5e-75 285.8 182 84.1
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 2.5e-75 285.8 182 85.7
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 3.6e-66 255.4 180 75.6
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 6.8e-65 251.1 184 73.4
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 5.7e-64 248.1 184 73.4
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 5.7e-64 248.1 210 68.6
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 7.5e-64 247.7 184 72.8
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 9.8e-64 247.3 184 72.8
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 3.4e-56 222.2 180 68.9
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 5.8e-56 221.5 181 66.9
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 1.9e-54 216.5 181 64.1
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.4e-54 216.1 181 67.4
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 2.0e-53 213.0 185 65.4
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 2.7e-53 212.6 201 62.2
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 1.3e-52 210.3 185 64.9
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 2.3e-52 209.5 180 65.0
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.1e-51 207.2 184 65.8
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 2.5e-51 206.1 182 62.1
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 7.3e-51 204.5 183 62.3
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.8e-50 202.6 182 62.1
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 3.6e-50 202.2 182 62.1
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 1.4e-49 200.3 182 61.5
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 3.1e-49 199.1 182 62.6
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 1.5e-48 196.8 186 62.4
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 2.6e-48 196.1 184 59.8
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 2.6e-48 196.1 183 61.7
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 4.4e-48 195.3 182 63.7
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 5.8e-48 194.9 181 63.0
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 9.9e-48 194.1 183 61.2
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 1.7e-47 193.4 181 58.0
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 2.2e-47 193.0 185 58.4
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 8.3e-47 191.0 182 58.2
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.9e-46 189.9 182 58.2
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 5.4e-46 188.3 181 62.4
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 7.1e-46 188.0 185 58.4
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 7.1e-46 188.0 183 59.6
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 1.6e-45 186.8 183 59.6
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 2.1e-45 186.4 184 62.5
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 4.6e-45 185.3 176 60.2
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 4.6e-45 185.3 182 56.6
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 7.8e-45 184.5 233 48.1
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.3e-44 183.7 193 56.0
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 5.6e-43 178.3 186 61.3
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 7.3e-43 177.9 174 61.5
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 4.7e-42 175.3 181 58.0
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 6.2e-42 174.9 179 56.4
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 8.1e-42 174.5 181 56.9
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 8.1e-42 174.5 184 58.2
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 1.1e-41 174.1 183 59.6
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 1.1e-41 174.1 176 57.4
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 1.4e-41 173.7 182 55.5
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 3.1e-41 172.6 181 58.0
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 4.0e-41 172.2 187 58.8
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 6.8e-41 171.4 182 57.7
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 8.9e-41 171.0 183 56.3
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 1.2e-40 170.6 179 55.9
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 1.2e-40 170.6 111 80.2
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 1.2e-40 170.6 181 58.6
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 1.5e-40 170.2 127 69.3
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 5.8e-40 168.3 182 53.8
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 7.6e-40 167.9 185 56.2
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 7.6e-40 167.9 181 53.6
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 1.3e-39 167.2 184 57.1
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 1.7e-39 166.8 176 55.1
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 1.7e-39 166.8 181 53.6
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 2.2e-39 166.4 182 51.6
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 2.2e-39 166.4 113 78.8
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 2.9e-39 166.0 183 54.6
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 6.4e-39 164.9 181 55.8
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 1.1e-38 164.1 181 53.6
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 1.4e-38 163.7 126 67.5
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 2.4e-38 162.9 185 54.6
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 3.2e-38 162.5 133 66.9
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 4.1e-38 162.2 183 54.6
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 5.4e-38 161.8 112 74.1
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 7.1e-38 161.4 184 55.4
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 1.2e-37 160.6 184 54.9
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 1.2e-37 160.6 181 55.2
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 1.2e-37 160.6 185 54.1
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 3.5e-37 159.1 110 73.6
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 4.6e-37 158.7 176 55.1
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 7.8e-37 157.9 183 53.0
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 7.8e-37 157.9 184 54.3
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 1.0e-36 157.5 181 52.5
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.3e-36 157.1 118 69.5
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 5.1e-36 155.2 191 55.0
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 5.1e-36 155.2 128 64.1
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 1.1e-35 154.1 182 52.7
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 1.1e-35 154.1 180 52.2
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 1.1e-35 154.1 112 73.2
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 3.3e-35 152.5 181 53.6
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 4.3e-35 152.1 130 66.2
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 7.3e-35 151.4 182 51.6
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 9.6e-35 151.0 181 53.0
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 9.6e-35 151.0 111 71.2
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 2.1e-34 149.8 149 58.4
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 2.8e-34 149.4 152 59.9
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 1.8e-33 146.7 143 61.5
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 1.2e-32 144.1 146 56.2
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 3.4e-32 142.5 150 56.7
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 3.4e-32 142.5 150 56.7
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 7.6e-32 141.4 151 55.6
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 7.6e-32 141.4 159 54.7
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 1.3e-31 140.6 138 60.1
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 1.3e-31 140.6 125 59.2
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 1.7e-31 140.2 159 54.1
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 2.2e-31 139.8 149 54.4
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 4.9e-31 138.7 113 66.4
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 1.4e-30 137.1 112 67.0
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 5.4e-30 135.2 184 47.8
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 7.1e-30 134.8 103 70.9
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 9.3e-30 134.4 105 70.5
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 1.6e-29 133.7 183 49.7
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 1.0e-28 131.0 115 61.7
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 3.9e-28 129.0 154 55.8
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 2.5e-27 126.3 149 52.3
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 1.3e-26 124.0 169 46.2
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 2.1e-26 123.2 170 50.0
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 9.0e-25 117.9 96 69.8
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 4.5e-24 115.5 86 70.9
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 4.5e-24 115.5 146 50.0
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 7.6e-24 114.8 103 63.1
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 6.4e-23 111.7 78 76.9
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 1.1e-22 110.9 147 51.0
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 3.2e-22 109.4 92 66.3
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 2.1e-21 106.7 134 53.0
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 2.3e-20 103.2 92 60.9
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 3.9e-20 102.4 115 53.0
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 9.6e-19 97.8 163 40.5
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 3.7e-18 95.9 154 43.5
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 8.1e-18 94.7 142 43.0
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 3.1e-17 92.8 113 51.3
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 9.0e-17 91.3 104 53.8
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 6.4e-15 85.1 137 38.7
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 1.4e-14 84.0 163 39.3
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 3.2e-14 82.8 127 41.7
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 9.3e-14 81.3 127 47.2
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 7.9e-13 78.2 78 52.6
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 1.0e-12 77.8 84 52.4
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 2.3e-12 76.6 53 69.8
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 3.3e-11 72.8 78 47.4
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 3.3e-11 72.8 104 49.0
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 3.7e-10 69.3 84 53.6
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 6.2e-10 68.6 48 70.8


User provided reference genes

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