Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 1.1e-162 576.6 295 100.0
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 1.1e-127 460.3 313 76.7
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 6.1e-126 454.5 296 79.4
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 3.7e-123 445.3 290 78.3
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 2.5e-119 432.6 295 73.9
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 5.5e-119 431.4 295 75.6
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 2.1e-118 429.5 302 75.5
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 3.6e-118 428.7 284 76.8
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 2.6e-116 422.5 291 75.6
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 7.5e-116 421.0 273 76.6
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 2.8e-115 419.1 289 74.0
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 1.4e-114 416.8 289 74.0
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.8e-114 416.4 297 74.1
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 1.8e-114 416.4 234 88.5
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 3.1e-114 415.6 294 71.4
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 3.1e-114 415.6 279 73.8
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 5.4e-114 414.8 296 74.0
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 4.5e-113 411.8 266 75.9
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 5.9e-113 411.4 343 64.7
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 5.9e-113 411.4 294 70.4
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 5.9e-113 411.4 293 72.4
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 1.0e-112 410.6 295 74.9
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 1.3e-112 410.2 248 79.8
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 2.3e-112 409.5 299 69.6
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 2.5e-111 406.0 288 72.9
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 6.1e-110 401.4 277 72.2
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 6.8e-109 397.9 277 71.8
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 1.2e-108 397.1 289 69.6
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 2.0e-108 396.4 262 74.0
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 3.4e-108 395.6 293 68.3
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 1.7e-107 393.3 291 67.7
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 2.9e-107 392.5 279 69.2
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 3.7e-107 392.1 285 69.8
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 1.4e-106 390.2 258 72.9
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 3.2e-106 389.0 298 67.4
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 5.4e-106 388.3 291 67.0
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 5.4e-106 388.3 293 67.2
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.6e-105 386.7 295 66.1
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.6e-105 386.7 295 66.1
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 2.7e-105 386.0 292 68.5
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 2.7e-105 386.0 261 72.0
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 3.5e-105 385.6 294 66.3
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 3.5e-105 385.6 292 67.8
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 6.0e-105 384.8 292 67.5
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 7.8e-105 384.4 294 67.7
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 7.8e-105 384.4 291 67.4
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 8.6e-104 380.9 295 66.4
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 1.1e-103 380.6 285 67.7
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 3.3e-103 379.0 286 66.4
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 3.3e-103 379.0 265 73.2
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 5.6e-103 378.3 285 66.3
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 5.6e-103 378.3 297 65.0
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 1.6e-102 376.7 283 67.1
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 6.2e-102 374.8 304 63.2
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 6.2e-102 374.8 285 65.3
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 1.1e-101 374.0 309 62.5
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 1.1e-101 374.0 305 64.3
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 2.3e-101 372.9 295 63.4
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 3.1e-101 372.5 269 67.3
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 5.2e-101 371.7 288 66.7
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 1.2e-100 370.5 290 64.5
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.6e-100 369.4 255 72.2
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 2.6e-100 369.4 305 61.6
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 4.4e-100 368.6 291 64.9
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 5.8e-100 368.2 258 70.2
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 9.8e-100 367.5 305 62.6
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 2.9e-99 365.9 305 62.3
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 6.4e-99 364.8 297 63.3
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 1.9e-98 363.2 294 64.6
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 4.1e-98 362.1 255 69.8
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 4.1e-98 362.1 285 66.3
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 7.0e-98 361.3 262 69.1
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 4.6e-97 358.6 300 62.3
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 7.8e-97 357.8 229 74.2
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 1.1e-95 354.0 283 64.3
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 1.4e-93 347.1 231 71.0
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 1.4e-93 347.1 228 73.7
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 1.8e-93 346.7 231 70.6
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 8.9e-93 344.4 231 69.7
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 3.4e-92 342.4 255 66.7
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 1.4e-90 337.0 260 63.5
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 5.1e-88 328.6 282 57.8
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 4.7e-86 322.0 203 76.8
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 1.1e-85 320.9 245 66.1
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 5.2e-85 318.5 216 69.4
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 6.4e-83 311.6 217 70.5
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 5.1e-80 302.0 206 68.4
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 3.6e-78 295.8 205 70.2
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 6.2e-78 295.0 204 70.6
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 6.9e-77 291.6 266 59.0
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 9.3e-74 281.2 266 55.6
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 3.5e-73 279.3 187 71.7
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 4.6e-73 278.9 214 70.6
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 1.5e-71 273.9 183 69.4
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 1.9e-71 273.5 291 52.2
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 8.1e-70 268.1 255 52.5
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 7.6e-68 261.5 219 65.8
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 3.8e-67 259.2 291 48.5
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 6.7e-64 248.4 247 53.0
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 1.9e-63 246.9 165 70.3
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 6.9e-61 238.4 257 48.6
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 1.0e-51 208.0 134 75.4
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 4.9e-51 205.7 290 43.4
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 1.2e-49 201.1 293 46.1
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.7e-43 180.6 109 82.6
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 6.1e-33 145.6 170 47.1
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 3.2e-26 123.2 100 61.0
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 1.6e-25 120.9 100 58.0
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 1.0e-24 118.2 299 32.1
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 1.1e-23 114.8 340 29.7
RcHm_v2.0_Chr6g0248571 Rosa chinensis HOM05D001568 ORTHO05D008804 3.6e-17 93.2 104 52.9
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 7.5e-15 85.5 103 46.6
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.7e-14 84.3 102 46.1
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 5.0e-11 72.8 48 68.8
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 7.2e-10 68.9 59 55.9
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 2.1e-09 67.4 59 52.5
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 2.1e-09 67.4 59 52.5
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 2.1e-09 67.4 51 58.8
Actinidia27998 Actinidia chinensis HOM05D001568 ORTHO05D008804 6.1e-09 65.9 111 43.2
Haze_10306 Corylus avellana HOM05D000031 ORTHO05D001033 4.0e-08 63.2 61 68.9
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 2.8e-06 57.0 46 58.7


User provided reference genes

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