Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 0.0e+00 1249.2 654 100.0
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 1.7e-282 975.7 635 82.8
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 2.3e-282 975.3 634 82.6
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 1.9e-268 929.1 654 76.8
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 1.5e-265 919.5 686 73.5
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 2.5e-260 902.1 713 70.4
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 8.8e-250 867.1 795 63.1
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 9.4e-236 820.5 657 69.1
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 3.5e-230 802.0 661 67.0
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 3.0e-226 788.9 656 67.1
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 5.2e-226 788.1 659 65.1
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 3.1e-223 778.9 655 66.3
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 4.9e-216 755.0 653 64.5
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 4.9e-216 755.0 653 64.3
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 7.8e-214 747.7 653 64.2
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 7.3e-212 741.1 662 63.7
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 1.2e-211 740.3 654 62.8
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.8e-210 736.5 660 61.8
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 5.2e-210 734.9 660 61.7
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 1.3e-208 730.3 654 63.1
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 2.2e-208 729.6 657 62.3
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 2.2e-208 729.6 655 62.6
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 1.8e-207 726.5 650 62.5
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 3.2e-207 725.7 655 62.3
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 1.9e-204 716.5 653 60.3
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 4.7e-203 711.8 653 62.0
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 8.0e-203 711.1 657 59.8
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 1.4e-202 710.3 657 61.6
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 7.5e-201 704.5 670 60.6
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 1.7e-200 703.4 670 60.4
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 2.2e-200 703.0 646 61.8
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 3.7e-200 702.2 655 60.9
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 2.4e-199 699.5 650 59.8
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 3.2e-199 699.1 662 60.1
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 7.0e-199 698.0 649 60.7
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 3.9e-197 692.2 680 58.7
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 2.5e-196 689.5 654 59.6
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 9.5e-196 687.6 664 58.9
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 1.2e-195 687.2 619 62.2
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 8.9e-194 681.0 689 57.9
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 4.4e-193 678.7 640 59.4
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 6.4e-192 674.9 651 58.4
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 3.5e-190 669.1 655 58.5
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 1.1e-188 664.1 523 68.6
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 1.7e-184 650.2 657 58.4
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 1.1e-183 647.5 688 56.0
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 1.4e-183 647.1 657 57.8
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 4.1e-183 645.6 594 60.9
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 7.3e-180 634.8 650 57.4
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 1.2e-179 634.0 652 56.0
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 1.1e-178 630.9 656 56.9
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 2.4e-178 629.8 663 54.9
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 7.6e-177 624.8 650 55.4
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 4.2e-175 619.0 650 54.6
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 2.1e-174 616.7 606 59.1
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 6.0e-174 615.1 650 54.0
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 6.0e-174 615.1 650 54.5
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 7.8e-174 614.8 653 55.1
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 1.0e-173 614.4 646 54.8
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 2.3e-173 613.2 767 49.9
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 1.6e-171 607.1 646 54.3
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 1.8e-170 603.6 646 53.7
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 1.7e-168 597.0 653 53.6
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 3.2e-167 592.8 661 53.6
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 7.1e-167 591.7 646 51.9
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 2.3e-165 586.6 527 60.7
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 4.3e-164 582.4 671 52.2
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 6.2e-163 578.6 674 50.3
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 1.1e-162 577.8 647 53.3
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 4.0e-162 575.9 635 54.2
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 2.0e-161 573.5 674 50.1
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 4.5e-161 572.4 697 49.4
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 1.7e-160 570.5 686 48.1
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 1.1e-159 567.8 673 49.8
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 9.3e-159 564.7 674 49.6
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 1.1e-156 557.8 423 72.8
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 2.5e-156 556.6 697 48.2
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 1.8e-154 550.4 656 48.6
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 1.7e-152 543.9 653 50.2
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 7.1e-151 538.5 656 50.8
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 2.7e-150 536.6 450 65.3
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 5.1e-149 532.3 450 64.0
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 1.8e-146 523.9 634 48.7
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 1.7e-144 517.3 659 47.6
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 5.5e-143 512.3 422 64.5
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 7.2e-143 511.9 479 59.3
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 9.3e-143 511.5 667 47.7
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 2.7e-142 510.0 597 49.4
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 4.5e-129 466.1 720 43.1
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 6.1e-126 455.7 662 44.1
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 4.1e-122 443.0 484 54.5
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 2.0e-121 440.7 655 44.1
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 6.1e-118 429.1 525 50.1
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 1.2e-116 424.9 652 42.5
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 4.4e-116 422.9 679 41.2
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 4.2e-111 406.4 451 55.0
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 7.2e-111 405.6 655 41.4
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 1.2e-110 404.8 504 48.4
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 4.7e-110 402.9 651 40.2
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 5.2e-109 399.4 667 40.5
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 1.1e-106 391.7 499 47.5
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 2.5e-87 327.4 850 33.1
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 3.1e-77 293.9 216 71.3
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 2.6e-76 290.8 506 37.5
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.5e-71 275.0 312 54.2
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 2.1e-65 254.6 165 80.6
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 1.9e-58 231.5 216 59.7
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 4.2e-58 230.3 268 56.7
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 9.3e-58 229.2 338 46.2
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 9.6e-55 219.2 813 28.7
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 5.3e-53 213.4 150 76.0
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 9.0e-53 212.6 153 71.9
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 1.2e-52 212.2 753 28.0
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 1.8e-40 171.8 222 46.4
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 1.1e-37 162.5 326 38.3
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 7.4e-31 139.8 197 46.7
SEGI_17957 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 6.9e-29 133.3 180 43.9
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 1.9e-26 125.2 101 64.4
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 1.3e-22 112.5 78 74.4
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 8.2e-22 109.8 100 63.0
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.8e-21 108.6 97 63.9
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 5.9e-20 103.6 90 67.8
Sc18g0007380 Simmondsia chinensis HOM05D006229 ORTHO05D007190 4.1e-13 80.9 90 50.0
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 3.5e-12 77.8 47 78.7
Sc18g0007390 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.0e-11 76.3 100 42.0
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 2.9e-11 74.7 52 69.2
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 6.1e-09 67.0 88 43.2
SEGI_21265 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 3.0e-08 64.7 51 68.6
CSS0040212 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D007190 9.7e-07 59.7 41 73.2


User provided reference genes

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