Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G144600 Prunus persica HOM05D006273 ORTHO05D007607 5.5e-176 620.9 328 100.0
MD05G1099900 Malus domestica HOM05D006273 ORTHO05D007607 2.9e-124 449.1 331 77.3
RcHm_v2.0_Chr6g0253781 Rosa chinensis HOM05D006273 ORTHO05D007607 2.4e-115 419.5 334 72.5
FAN27G2995 Fragaria x ananassa HOM05D006273 ORTHO05D007607 2.2e-108 396.4 325 68.9
FAN15G3526 Fragaria x ananassa HOM05D006273 ORTHO05D007607 6.4e-108 394.8 324 68.8
FAN24G1968 Fragaria x ananassa HOM05D006273 ORTHO05D007607 2.9e-100 369.4 328 67.7
FAN24G2779 Fragaria x ananassa HOM05D006273 ORTHO05D007607 2.9e-100 369.4 328 67.7
FAN20G1056 Fragaria x ananassa HOM05D006273 ORTHO05D007607 2.0e-93 346.7 324 64.8
FvH4_2g04340 Fragaria vesca HOM05D006273 ORTHO05D007607 7.1e-91 338.2 328 63.4
Dinv42237 Davidia involucrata HOM05D006273 ORTHO05D007607 7.9e-90 334.7 333 61.0
Manes.10G081700 Manihot esculenta HOM05D006273 ORTHO05D007607 1.1e-86 324.3 344 60.5
Actinidia04385 Actinidia chinensis HOM05D002857 ORTHO05D007919 1.4e-86 323.9 335 57.9
Hma1.2p1_1059F.1_g252960 Hydrangea macrophylla HOM05D006273 ORTHO05D007607 3.4e-85 319.3 334 58.4
Cfa004628 Carpinus fangiana HOM05D006273 ORTHO05D007607 8.4e-84 314.7 333 59.8
Thecc.02G116800 Theobroma cacao HOM05D006273 ORTHO05D007607 1.4e-83 313.9 337 59.1
Cpa.g.sc106.50 Carica papaya HOM05D006273 ORTHO05D007607 4.2e-83 312.4 334 57.5
CiPaw.05G017700 Carya illinoinensis HOM05D006273 ORTHO05D007607 9.3e-83 311.2 333 61.0
QL11p030642 Quercus lobata HOM05D006273 ORTHO05D007607 1.2e-82 310.8 335 58.8
Duzib132G0234 Durio zibethinus HOM05D006273 ORTHO05D007607 1.8e-81 307.0 337 57.6
Duzib248G0443 Durio zibethinus HOM05D006273 ORTHO05D007607 1.9e-80 303.5 345 57.4
Gorai.008G020400 Gossypium raimondii HOM05D006273 ORTHO05D007607 7.4e-80 301.6 341 56.9
Gohir.D12G020000 Gossypium hirsutum HOM05D006273 ORTHO05D007607 1.3e-79 300.8 341 56.9
Gohir.A12G019800 Gossypium hirsutum HOM05D006273 ORTHO05D007607 2.1e-79 300.1 341 56.9
COL.COLO4_32516 Corchorus olitorius HOM05D006273 ORTHO05D007607 8.1e-79 298.1 334 56.9
Potri.009G088600 Populus trichocarpa HOM05D006273 ORTHO05D007607 2.0e-77 293.5 334 58.1
GSVIVG01037839001 Vitis vinifera HOM05D006273 ORTHO05D007607 7.6e-77 291.6 351 53.8
CANSAT25G0612 Cannabis sativa HOM05D006273 ORTHO05D007607 1.9e-75 287.0 333 54.7
Haze_10223 Corylus avellana HOM05D006273 ORTHO05D007607 9.3e-75 284.6 311 57.9
Lj5A219G34 Lonicera japonica HOM05D006273 ORTHO05D007607 1.6e-71 273.9 349 51.9
TWI23G0281 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 1.2e-69 267.7 334 53.3
CSS0011953 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D007919 3.4e-69 266.2 312 55.8
Ciclev10028827m.g Citrus clementina HOM05D006273 ORTHO05D007607 1.0e-68 264.6 336 52.4
ClCG10G010280 Citrullus lanatus HOM05D006273 ORTHO05D007607 1.7e-68 263.8 339 52.5
Nn5g30577 Nelumbo nucifera HOM05D006273 ORTHO05D007607 1.7e-68 263.8 337 51.0
Cc02_g19850 Coffea canephora HOM05D006273 ORTHO05D007607 8.5e-68 261.5 336 51.5
CsaV3_4G000230 Cucumis sativus L. HOM05D006273 ORTHO05D007607 1.1e-67 261.2 340 52.4
MSTRG.5316 Avicennia marina HOM05D006273 ORTHO05D007607 4.6e-66 255.8 342 49.7
Sabra09G0068600 Salix brachista HOM05D006273 ORTHO05D007607 1.3e-65 254.2 393 48.1
MELO3C018010.2 Cucumis melo HOM05D006273 ORTHO05D007607 5.1e-65 252.3 338 52.1
Nitab4.5_0008075g0050 Nicotiana tabacum HOM05D006273 ORTHO05D007607 2.5e-64 250.0 344 49.1
PGSC0003DMG400025745 Solanum tuberosum HOM05D006273 ORTHO05D007607 9.7e-64 248.1 344 48.8
Solyc01g107030.3 Solanum lycopersicum HOM05D006273 ORTHO05D007607 6.9e-62 241.9 339 48.1
DCAR_001698 Daucus carota HOM05D006273 ORTHO05D007607 1.3e-60 237.7 343 47.5
Sopen01g049300 Solanum pennellii HOM05D006273 ORTHO05D007607 2.2e-60 236.9 339 47.2
Sed0011178 Sechium edule HOM05D006273 ORTHO05D007607 5.0e-60 235.7 341 49.0
TAR381G1192 Trochodendron aralioides HOM05D006273 ORTHO05D007607 6.5e-60 235.3 313 50.8
Oeu010445.1 Olea europaea HOM05D006273 ORTHO05D007607 1.1e-59 234.6 308 52.6
Rhsim05G0090800 Rhododendron simsii HOM05D002857 ORTHO05D007919 5.5e-59 232.3 366 44.5
PGR042G0373 Punica granatum HOM05D006273 ORTHO05D007607 1.6e-58 230.7 341 47.8
TAR628G0174 Trochodendron aralioides HOM05D006273 ORTHO05D007607 6.3e-55 218.8 337 47.5
SalBow3G1994 Salvia bowleyana HOM05D006273 ORTHO05D007607 3.8e-52 209.5 370 41.9
CSS0045592 Camellia sinensis var. sinensis HOM05D006273 ORTHO05D007607 7.2e-51 205.3 248 53.2
CAN.G606.58 Capsicum annuum HOM05D006273 ORTHO05D007607 1.6e-50 204.1 317 43.8
vmacro19532 Vaccinium macrocarpon HOM05D006273 ORTHO05D007607 6.1e-50 202.2 403 39.5
arahy.Tifrunner.gnm1.ann1.71AIDN Arachis hypogaea HOM05D006273 ORTHO05D007607 1.1e-48 198.0 331 44.1
Peaxi162Scf00016g02848 Petunia axillaris HOM05D006273 ORTHO05D007607 3.7e-47 193.0 312 42.0
Nn1g04569 Nelumbo nucifera HOM05D006273 ORTHO05D007607 1.8e-46 190.7 335 43.3
Sc18g0007420 Simmondsia chinensis HOM05D006273 ORTHO05D007607 1.2e-45 188.0 324 45.1
PSO541G6083 Papaver somniferum HOM05D006273 ORTHO05D007607 2.0e-45 187.2 334 44.9
arahy.Tifrunner.gnm1.ann1.P501AI Arachis hypogaea HOM05D006273 ORTHO05D007607 5.0e-44 182.6 348 41.4
Eucgr.G01219 Eucalyptus grandis HOM05D006273 ORTHO05D007607 1.2e-42 177.9 279 48.7
Sc18g0007460 Simmondsia chinensis HOM05D006273 ORTHO05D007607 3.6e-42 176.4 324 44.1
PSO675G1322 Papaver somniferum HOM05D006273 ORTHO05D007607 2.3e-41 173.7 338 42.9
Glyma.20G134100 Glycine max HOM05D006273 ORTHO05D007607 2.6e-40 170.2 326 41.7
Aqoxy6G02639 Aquilegia oxysepala HOM05D006273 ORTHO05D007607 4.4e-40 169.5 346 41.3
Hund24173 Selenicereus undatus HOM05D006273 ORTHO05D007607 7.5e-40 168.7 307 45.0
Lj5g0005423 Lotus japonicus HOM05D006273 ORTHO05D007607 9.7e-40 168.3 349 40.7
SGA_v2.0_scaffold225G43040 Striga asiatica HOM05D006273 ORTHO05D007607 4.8e-39 166.0 317 41.6
VMungo1215G3137 Vigna mungo HOM05D006273 ORTHO05D007607 4.8e-39 166.0 332 40.1
Phvul.002G051700 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 1.4e-38 164.5 330 40.9
EL10Ac9g22769 Beta vulgaris HOM05D006273 ORTHO05D007607 1.6e-37 161.0 344 38.1
Lsat_1_v5_gn_5_114180 Lactuca sativa HOM05D006273 ORTHO05D007607 4.5e-37 159.5 332 40.7
HanXRQChr10g0292221 Helianthus annuus HOM05D006273 ORTHO05D007607 3.8e-36 156.4 331 41.7
VMungo0720G2467 Vigna mungo HOM05D006273 ORTHO05D007607 5.0e-36 156.0 326 37.7
TPR.G27136 Trifolium pratense HOM05D006273 ORTHO05D007607 1.9e-35 154.1 328 38.4
Phvul.007G045300 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 1.2e-34 151.4 327 39.1
ATR1153G071 Amborella trichopoda HOM05D006273 ORTHO05D007607 1.6e-34 151.0 349 39.5
THA.LOC104815220 Tarenaya hassleriana HOM05D006273 ORTHO05D007607 1.6e-34 151.0 335 40.6
Glyma.10G257100 Glycine max HOM05D006273 ORTHO05D007607 2.7e-34 150.2 325 40.0
Atru.chr5.2357 Acer truncatum HOM05D006273 ORTHO05D007607 4.7e-34 149.4 254 43.7
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 1.8e-33 147.5 310 40.0
ECA234G1150 Erigeron canadensis HOM05D006273 ORTHO05D007607 3.0e-33 146.7 326 39.6
Potri.001G295000 Populus trichocarpa HOM05D006273 ORTHO05D007607 3.0e-33 146.7 150 60.0
Migut.N01140 Erythranthe guttata HOM05D006273 ORTHO05D007607 5.2e-33 146.0 332 39.8
Lalb_Chr06g0165121 Lupinus albus HOM05D006273 ORTHO05D007607 5.2e-33 146.0 327 38.5
Thhalv10021227m.g Eutrema salsugineum HOM05D006273 ORTHO05D007607 2.0e-32 144.1 335 43.6
Glyma.01G242500 Glycine max HOM05D006273 ORTHO05D007607 3.4e-32 143.3 325 40.6
Psat6g214920 Pisum sativum HOM05D006273 ORTHO05D007607 1.3e-31 141.4 225 43.6
Ca_11032_v3 Cicer arietinum L. HOM05D006273 ORTHO05D007607 4.8e-31 139.4 179 49.2
Nitab4.5_0001105g0020 Nicotiana tabacum HOM05D006273 ORTHO05D007607 2.4e-30 137.1 166 50.0
TWI59G0086 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 3.1e-30 136.7 196 45.9
CARHR095110 Cardamine hirsuta HOM05D006273 ORTHO05D007607 1.6e-29 134.4 333 41.1
C05p45180 Brassica napus HOM05D006273 ORTHO05D007607 3.5e-29 133.3 333 40.5
Medtr1g106210 Medicago truncatula HOM05D006273 ORTHO05D007607 1.3e-28 131.3 337 36.2
Carub.0003s1952 Capsella rubella HOM05D006273 ORTHO05D007607 1.7e-28 131.0 332 38.6
Glyma.11G001800 Glycine max HOM05D006273 ORTHO05D007607 2.2e-28 130.6 331 39.9
BcaC05g28438 Brassica carinata HOM05D006273 ORTHO05D007607 8.5e-28 128.6 332 40.1
Hund24138 Selenicereus undatus HOM05D006273 ORTHO05D007607 1.1e-27 128.3 209 48.3
Sp3g17690 Schrenkiella parvula HOM05D006273 ORTHO05D007607 3.6e-26 123.2 334 38.0
BolC5t33244H Brassica oleracea HOM05D000470 ORTHO05D000348 4.7e-26 122.9 333 39.0
Lj1g0018578 Lotus japonicus HOM05D006273 ORTHO05D007607 4.7e-26 122.9 321 33.6
FvH4_2g03741 Fragaria vesca HOM05D006273 ORTHO05D007607 6.1e-26 122.5 120 66.7
Ah.01g002130 Amaranthus hybridus HOM05D006273 ORTHO05D007607 3.0e-25 120.2 295 36.3
AUR62017546 Chenopodium quinoa HOM05D006273 ORTHO05D007607 6.8e-25 119.0 313 36.4
BcaB06g26035 Brassica carinata HOM05D006273 ORTHO05D007607 1.2e-24 118.2 335 39.7
AT3G19650 Arabidopsis thaliana HOM05D006273 ORTHO05D007607 2.0e-24 117.5 332 37.3
Os03g0203000 Oryza sativa ssp. japonica HOM05D006273 ORTHO05D007607 1.3e-23 114.8 295 35.6
HPP92_007764 Vanilla planifolia HOM05D006273 ORTHO05D007607 1.3e-23 114.8 355 37.2
CDE04G2504 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 6.3e-23 112.5 320 36.2
CDE02G4649 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 3.1e-22 110.2 325 35.7
Aa31LG8G6430 Aethionema arabicum HOM05D006273 ORTHO05D007607 5.4e-22 109.4 311 38.9
Zm00001eb007690 Zea mays HOM05D006273 ORTHO05D007607 2.0e-21 107.5 337 36.2
SHI05153 Sapria himalayana HOM05D006273 ORTHO05D007607 5.6e-19 99.4 320 35.3
Oeu037282.1 Olea europaea HOM05D006273 ORTHO05D007607 1.2e-16 91.7 240 39.2
AUR62025214 Chenopodium quinoa HOM05D000052 ORTHO05D007607 1.5e-16 91.3 195 37.4
AUR62044228 Chenopodium quinoa HOM05D006273 ORTHO05D007607 4.4e-16 89.7 304 33.6
AL3G33090 Arabidopsis lyrata HOM05D006273 ORTHO05D007607 2.2e-15 87.4 331 33.5
SEGI_25142 Sequoiadendron giganteum HOM05D006273 ORTHO05D007607 1.8e-14 84.3 251 34.7
Dinv15806 Davidia involucrata HOM05D006273 ORTHO05D007607 2.3e-12 77.4 71 63.4
Aqoxy6G02626 Aquilegia oxysepala HOM05D002857 ORTHO05D007919 1.5e-11 74.7 253 33.6
Dinv15805 Davidia involucrata HOM05D006273 ORTHO05D007607 5.6e-11 72.8 127 42.5
Actinidia00372 Actinidia chinensis HOM05D006273 ORTHO05D007607 1.8e-09 67.8 151 39.1
TPR.G8308 Trifolium pratense HOM05D006273 ORTHO05D007607 4.0e-09 66.6 261 31.0
Medtr5g005040 Medicago truncatula HOM05D006273 ORTHO05D007607 1.1e-06 58.5 71 49.3
Actinidia27988 Actinidia chinensis HOM05D006273 ORTHO05D007607 4.1e-06 56.6 64 54.7


User provided reference genes

Program Settings