Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 8.2e-58 226.9 116 100.0
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 2.9e-31 138.7 118 69.5
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 9.4e-30 133.7 109 64.2
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 1.0e-28 130.2 109 66.1
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 9.7e-27 123.6 109 59.6
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 9.7e-27 123.6 109 59.6
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 2.2e-26 122.5 110 64.5
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 2.8e-26 122.1 109 61.5
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 4.4e-19 98.2 101 57.4
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 4.4e-19 98.2 114 53.5
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 7.5e-19 97.4 107 55.1
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 9.7e-19 97.1 80 66.2
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 9.7e-19 97.1 111 55.9
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 2.2e-18 95.9 108 54.6
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 3.7e-18 95.1 92 59.8
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 4.8e-18 94.7 102 56.9
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 6.3e-18 94.4 107 53.3
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 8.3e-18 94.0 104 55.8
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 1.4e-17 93.2 70 72.9
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.8e-17 92.8 111 55.0
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 1.8e-17 92.8 111 55.0
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 3.1e-17 92.0 106 53.8
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 5.3e-17 91.3 109 54.1
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 1.2e-16 90.1 109 53.2
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 1.2e-16 90.1 110 54.5
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 2.7e-16 89.0 106 50.9
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 2.7e-16 89.0 105 56.2
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 7.7e-16 87.4 68 70.6
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 1.0e-15 87.0 110 49.1
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 1.3e-15 86.7 70 65.7
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 1.7e-15 86.3 70 65.7
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 1.7e-15 86.3 103 53.4
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 2.2e-15 85.9 114 48.2
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 2.9e-15 85.5 108 53.7
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 2.9e-15 85.5 107 48.6
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 3.8e-15 85.1 110 48.2
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 3.8e-15 85.1 102 55.9
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 5.0e-15 84.7 83 63.9
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 5.0e-15 84.7 71 64.8
RcHm_v2.0_Chr6g0253731 Rosa chinensis HOM05D007107 ORTHO05D025431 5.0e-15 84.7 99 54.5
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 6.5e-15 84.3 75 66.7
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 8.5e-15 84.0 108 47.2
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 1.9e-14 82.8 65 66.2
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 2.5e-14 82.4 83 55.4
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 2.5e-14 82.4 112 49.1
Sed0004586 Sechium edule HOM05D007107 ORTHO05D009198 3.2e-14 82.0 114 46.5
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 3.2e-14 82.0 80 58.8
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 4.2e-14 81.6 62 71.0
Prupe.8G144100 Prunus persica HOM05D007107 ORTHO05D009198 4.2e-14 81.6 99 53.5
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 4.2e-14 81.6 107 47.7
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 5.5e-14 81.3 80 60.0
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 9.4e-14 80.5 76 59.2
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 1.2e-13 80.1 109 46.8
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 2.7e-13 79.0 71 63.4
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 3.6e-13 78.6 110 48.2
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 3.6e-13 78.6 80 56.2
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 4.7e-13 78.2 80 57.5
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 8.0e-13 77.4 71 62.0
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 8.0e-13 77.4 69 62.3
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 8.0e-13 77.4 64 67.2
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 8.0e-13 77.4 71 62.0
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 1.4e-12 76.6 110 47.3
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.8e-12 76.3 110 47.3
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 1.8e-12 76.3 71 62.0
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 4.0e-12 75.1 71 63.4
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 4.0e-12 75.1 87 49.4
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 2.6e-11 72.4 104 47.1
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 2.6e-11 72.4 128 40.6
Eucgr.G01220 Eucalyptus grandis HOM05D007107 ORTHO05D009198 9.8e-11 70.5 107 46.7
FvH4_2g04291 Fragaria vesca HOM05D007107 ORTHO05D025431 9.8e-11 70.5 91 51.6
CANSAT25G2317 Cannabis sativa HOM05D007107 ORTHO05D009198 2.2e-10 69.3 111 41.4
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 2.8e-10 68.9 82 54.9
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 4.8e-10 68.2 63 58.7
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 4.8e-10 68.2 63 58.7
FAN24G1269 Fragaria x ananassa HOM05D007107 ORTHO05D009198 4.8e-10 68.2 47 74.5
SalBow6G0491 Salvia bowleyana HOM05D007107 ORTHO05D009198 8.3e-10 67.4 89 47.2
PGSC0003DMG400025844 Solanum tuberosum HOM05D007107 ORTHO05D009198 8.3e-10 67.4 57 68.4
DCAR_001690 Daucus carota HOM05D007107 ORTHO05D009198 1.8e-09 66.2 100 43.0
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 4.1e-09 65.1 94 47.9
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 4.1e-09 65.1 73 57.5
AT3G19615 Arabidopsis thaliana HOM05D007107 ORTHO05D009198 7.0e-09 64.3 91 50.5
ECA234G2040 Erigeron canadensis HOM05D007107 ORTHO05D009198 7.0e-09 64.3 93 47.3
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 9.1e-09 63.9 63 55.6
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 9.1e-09 63.9 63 55.6
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 1.6e-08 63.2 64 59.4
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 1.6e-08 63.2 82 51.2
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 1.6e-08 63.2 89 47.2
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 2.7e-08 62.4 72 52.8
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 2.7e-08 62.4 61 57.4
A01p35080 Brassica napus HOM05D007107 ORTHO05D009198 4.5e-08 61.6 92 46.7
BraA01t03589Z Brassica rapa HOM05D007107 ORTHO05D009198 4.5e-08 61.6 92 46.7
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 4.5e-08 61.6 81 49.4
BcaC09g48926 Brassica carinata HOM05D007107 ORTHO05D009198 5.9e-08 61.2 79 51.9
C01p44500 Brassica napus HOM05D007107 ORTHO05D009198 5.9e-08 61.2 79 51.9
BolC1t04415H Brassica oleracea HOM05D007107 ORTHO05D009198 5.9e-08 61.2 79 51.9
BolC3t17339H Brassica oleracea HOM05D007107 ORTHO05D009198 7.7e-08 60.8 64 56.2
BcaB04g20690 Brassica carinata HOM05D007107 ORTHO05D009198 2.9e-07 58.9 75 52.0
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 2.9e-07 58.9 76 51.3
BcaB04g19054 Brassica carinata HOM05D007107 ORTHO05D009198 3.8e-07 58.5 59 62.7
FAN24G0803 Fragaria x ananassa HOM05D007107 ORTHO05D025431 3.8e-07 58.5 91 45.1
Ah.14g085610 Amaranthus hybridus HOM05D007107 ORTHO05D009198 6.6e-07 57.8 62 54.8
Oeu008318.1 Olea europaea HOM05D007107 ORTHO05D009198 6.6e-07 57.8 73 52.1
PGSC0003DMG400025747 Solanum tuberosum HOM05D007107 ORTHO05D009198 8.6e-07 57.4 57 56.1
unitig_27.g25075 Utricularia gibba HOM05D007107 ORTHO05D009198 1.5e-06 56.6 51 58.8
FAN24G0788 Fragaria x ananassa HOM05D007107 ORTHO05D025431 5.5e-06 54.7 89 43.8


User provided reference genes

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