Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 9.3e-206 719.9 352 100.0
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 1.2e-176 623.2 363 85.7
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 1.4e-169 599.7 352 83.8
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 2.6e-168 595.5 377 79.3
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 3.0e-164 582.0 366 80.6
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.2e-162 575.9 358 79.6
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 2.4e-161 572.4 357 78.7
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.6e-160 569.7 357 78.7
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 1.0e-159 567.0 354 77.4
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 8.5e-159 563.9 353 78.5
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.5e-158 563.1 357 77.3
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 4.2e-158 561.6 360 75.8
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 2.1e-157 559.3 357 76.8
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 6.1e-157 557.8 354 76.8
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 6.1e-157 557.8 365 76.2
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 1.2e-155 553.5 352 77.3
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 1.2e-155 553.5 350 76.9
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 1.5e-155 553.1 350 77.4
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 2.0e-155 552.7 354 75.7
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.4e-155 551.6 355 77.2
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 2.2e-154 549.3 352 76.4
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.8e-154 548.9 372 73.7
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 1.8e-153 546.2 353 75.6
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 3.1e-153 545.4 351 76.1
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 4.1e-153 545.0 352 76.7
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 4.1e-153 545.0 360 74.2
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 5.4e-153 544.7 352 76.4
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 7.0e-153 544.3 349 77.1
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 9.1e-153 543.9 350 76.0
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 1.2e-152 543.5 351 75.2
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 4.5e-152 541.6 354 74.9
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 4.5e-152 541.6 352 76.1
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.3e-151 540.0 352 77.3
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 1.7e-151 539.7 352 74.1
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 2.9e-151 538.9 375 71.2
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 6.6e-151 537.7 350 75.1
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.1e-150 537.0 359 72.7
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.1e-150 537.0 359 72.7
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 1.1e-150 537.0 354 74.3
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 1.5e-150 536.6 338 76.3
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 3.3e-150 535.4 352 74.7
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 3.3e-150 535.4 355 73.2
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.2e-149 533.5 350 73.7
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.2e-149 533.5 376 71.3
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 1.6e-149 533.1 346 75.7
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 2.1e-149 532.7 346 75.4
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 2.8e-149 532.3 354 73.7
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.6e-149 531.9 351 73.2
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.3e-148 529.3 351 72.6
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.0e-148 528.9 351 72.6
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.9e-146 522.3 358 72.6
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.9e-146 522.3 378 71.4
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 6.4e-146 521.2 375 69.9
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.1e-145 520.4 352 70.7
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.8e-145 519.6 352 70.5
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.8e-145 519.6 356 72.5
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.2e-145 518.8 362 69.6
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 5.4e-145 518.1 360 71.1
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 1.2e-144 516.9 352 71.9
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 1.6e-144 516.5 354 72.6
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 1.3e-143 513.5 352 72.7
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.7e-143 513.1 352 72.2
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.3e-143 512.7 344 74.4
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.9e-143 511.9 349 70.2
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 1.9e-142 509.6 360 71.1
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 4.3e-142 508.4 353 70.8
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 1.2e-141 506.9 354 71.8
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.6e-141 506.5 359 68.8
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 4.7e-141 505.0 358 69.8
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 1.0e-140 503.8 362 69.6
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.4e-140 503.4 359 68.5
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 2.3e-140 502.7 361 69.3
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 2.3e-140 502.7 359 68.5
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 3.1e-140 502.3 345 72.2
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 4.0e-140 501.9 353 71.1
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 2.6e-139 499.2 372 67.7
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.4e-139 498.8 354 72.3
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 1.3e-138 496.9 355 71.5
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 1.7e-138 496.5 343 71.7
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.9e-138 495.7 352 69.3
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.4e-138 494.6 352 69.3
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 2.4e-137 492.7 326 72.4
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 9.2e-137 490.7 354 71.2
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 1.2e-136 490.3 355 71.0
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.7e-136 489.2 360 68.6
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 2.7e-136 489.2 355 70.4
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.3e-135 486.9 352 68.5
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 3.0e-135 485.7 355 71.3
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 9.5e-134 480.7 355 69.0
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 9.5e-134 480.7 355 70.4
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 9.5e-134 480.7 356 70.2
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 1.2e-133 480.3 353 69.7
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 2.8e-133 479.2 351 70.4
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 2.8e-133 479.2 351 69.5
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 3.6e-133 478.8 353 69.7
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 3.6e-133 478.8 353 69.7
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 4.7e-133 478.4 356 67.7
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 1.8e-132 476.5 355 69.9
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 2.3e-132 476.1 355 69.9
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 2.0e-131 473.0 373 63.8
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 2.6e-131 472.6 327 71.6
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.4e-131 472.2 375 61.9
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 5.8e-131 471.5 352 67.6
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 7.5e-131 471.1 347 70.6
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 1.3e-130 470.3 347 70.3
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 1.9e-129 466.5 351 65.0
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 1.2e-128 463.8 371 61.5
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 1.6e-128 463.4 347 69.2
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 3.9e-127 458.8 350 66.9
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 8.6e-127 457.6 352 65.9
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 1.2e-125 453.8 344 69.8
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.2e-125 453.8 354 65.3
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 2.1e-125 453.0 355 67.6
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 8.1e-125 451.1 371 60.6
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 2.3e-124 449.5 342 65.5
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 1.7e-122 443.4 348 65.2
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 1.7e-122 443.4 352 65.9
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 6.4e-122 441.4 426 55.6
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.1e-121 440.7 315 70.5
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 1.2e-120 437.2 352 66.2
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 1.0e-119 434.1 530 47.4
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 3.9e-119 432.2 436 54.4
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 8.6e-119 431.0 331 69.5
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 1.5e-118 430.3 361 61.2
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 8.1e-117 424.5 364 60.2
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.5e-115 420.2 332 66.0
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.0e-115 419.9 418 54.3
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 7.8e-112 407.9 350 60.9
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.9e-111 405.6 333 60.4
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 6.2e-109 398.3 375 57.3
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.8e-108 396.7 367 54.8
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 3.1e-108 396.0 322 63.4
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 1.3e-98 364.0 350 56.9
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 3.7e-93 345.9 346 55.2
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 5.8e-91 338.6 230 71.7
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 3.0e-87 326.2 378 47.9
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 3.9e-87 325.9 393 46.6
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 5.7e-86 322.0 220 77.3
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 1.5e-75 287.3 166 81.9
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.1e-73 281.2 378 42.9
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.9e-73 280.4 375 46.4
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 3.2e-73 279.6 310 52.9
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 3.6e-72 276.2 226 69.5
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 1.1e-70 271.2 352 43.5
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 1.7e-69 267.3 257 56.4
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 1.7e-69 267.3 257 56.4
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 1.8e-68 263.8 239 54.0
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.7e-66 257.3 220 62.7
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.7e-66 257.3 387 40.1
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 4.2e-65 252.7 199 66.3
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.2e-56 224.6 136 81.6
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 2.0e-54 217.2 167 66.5
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 2.7e-43 180.3 128 63.3
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.6e-40 171.0 359 34.0
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 9.8e-38 161.8 102 74.5
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.5e-35 152.9 342 33.0
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.8e-31 141.0 122 58.2
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 4.1e-28 129.8 72 79.2
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 9.2e-20 102.1 78 67.9
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 6.6e-18 95.9 63 69.8
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.1e-07 62.0 33 75.8


User provided reference genes

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