Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 2.1e-169 599.0 309 100.0
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.1e-154 550.1 309 90.3
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 5.6e-154 547.7 309 89.3
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 9.5e-154 547.0 309 89.0
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 8.0e-153 543.9 309 88.7
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 1.8e-152 542.7 309 88.7
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.6e-151 538.9 309 88.0
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.5e-143 513.1 308 82.1
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.7e-142 509.6 309 82.5
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 2.9e-142 508.8 309 79.9
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 8.3e-142 507.3 309 79.9
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 4.6e-140 501.5 309 81.2
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 7.8e-140 500.7 307 82.1
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.5e-138 495.7 309 79.9
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.6e-137 493.0 309 79.3
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 1.2e-135 486.9 309 76.4
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.2e-135 486.9 309 78.3
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 5.8e-135 484.6 312 77.6
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 7.6e-135 484.2 309 79.3
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.3e-134 483.4 309 77.7
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.7e-134 483.0 303 79.2
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.1e-133 480.3 303 79.5
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.4e-133 479.9 309 76.4
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 2.4e-133 479.2 309 78.0
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 9.2e-133 477.2 304 77.3
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-132 476.9 303 78.9
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 1.2e-132 476.9 309 77.0
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.6e-132 476.5 309 78.0
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 2.1e-132 476.1 309 77.0
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 2.7e-132 475.7 312 77.9
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 4.6e-132 474.9 303 78.5
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 6.0e-132 474.6 319 76.2
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 7.8e-132 474.2 310 78.1
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 1.3e-131 473.4 310 75.2
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 6.6e-131 471.1 310 75.8
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 2.5e-130 469.2 350 68.6
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 5.6e-130 468.0 299 77.6
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 9.6e-130 467.2 303 76.2
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 9.6e-130 467.2 303 76.2
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 9.6e-130 467.2 301 75.7
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 2.1e-129 466.1 310 76.1
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 2.1e-129 466.1 302 75.2
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 6.2e-129 464.5 312 74.7
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 8.1e-129 464.2 305 74.4
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.8e-128 463.0 303 75.6
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.8e-128 463.0 309 75.7
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 2.4e-128 462.6 344 69.5
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 4.0e-128 461.8 257 88.7
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.0e-128 461.8 312 74.4
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 4.0e-128 461.8 298 75.2
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 4.0e-128 461.8 313 76.7
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 5.2e-128 461.5 297 75.4
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 6.8e-128 461.1 298 74.2
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 8.9e-128 460.7 311 74.0
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 8.9e-128 460.7 299 76.3
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.5e-127 459.9 311 75.2
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 2.6e-127 459.1 302 75.8
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 5.8e-127 458.0 310 74.2
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 5.8e-127 458.0 298 76.8
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 5.8e-127 458.0 346 68.5
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 5.8e-127 458.0 298 74.5
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 5.8e-127 458.0 303 74.6
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.7e-126 456.4 312 76.0
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 2.2e-126 456.1 314 74.2
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 8.4e-126 454.1 313 73.8
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 4.2e-125 451.8 315 73.3
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 1.6e-124 449.9 315 73.3
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 2.7e-124 449.1 308 73.4
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 8.7e-123 444.1 384 61.7
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.1e-122 443.7 312 72.8
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 1.5e-122 443.4 309 71.8
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 1.9e-122 443.0 340 68.5
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 7.3e-122 441.0 304 72.7
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 7.3e-122 441.0 305 74.8
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 9.6e-122 440.7 308 71.1
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 1.6e-121 439.9 297 74.1
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 2.8e-121 439.1 309 68.3
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 3.6e-121 438.7 269 79.6
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 8.1e-121 437.6 318 69.2
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.1e-120 437.2 307 72.6
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.1e-120 437.2 308 71.4
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.1e-120 437.2 310 72.9
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 1.4e-120 436.8 313 71.2
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 1.4e-120 436.8 309 69.6
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.8e-120 436.4 307 72.3
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 9.0e-120 434.1 301 72.1
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.2e-119 433.7 304 71.4
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 2.0e-119 433.0 286 73.1
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 4.4e-119 431.8 309 70.6
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 4.4e-119 431.8 313 69.3
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 9.9e-119 430.6 297 72.4
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 1.7e-118 429.9 303 71.6
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 3.8e-118 428.7 304 72.4
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 3.8e-118 428.7 311 69.8
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 3.8e-118 428.7 303 71.3
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 4.9e-118 428.3 309 69.3
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 6.4e-118 427.9 303 71.3
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 8.4e-118 427.6 303 71.0
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.1e-117 427.2 308 70.8
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 1.4e-117 426.8 303 71.3
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.4e-117 426.8 274 77.0
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 4.2e-117 425.2 309 68.9
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 4.2e-117 425.2 303 71.0
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 7.1e-117 424.5 297 72.1
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 2.1e-116 422.9 303 70.6
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 2.1e-116 422.9 347 63.4
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 2.7e-116 422.5 264 75.8
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 3.5e-116 422.2 308 69.8
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 3.5e-116 422.2 304 70.1
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.6e-116 421.8 259 80.3
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 6.0e-116 421.4 303 70.6
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 2.3e-115 419.5 285 73.0
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 2.3e-115 419.5 306 69.0
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.1e-114 417.2 304 69.7
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 4.3e-114 415.2 304 69.1
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 7.3e-114 414.5 308 68.8
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 9.6e-114 414.1 315 68.9
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 1.5e-111 406.8 306 69.9
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 5.8e-111 404.8 309 67.0
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 2.9e-110 402.5 315 66.7
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.4e-109 400.2 298 69.1
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 5.4e-109 398.3 275 70.2
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 1.1e-104 384.0 305 63.0
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.0e-103 379.8 299 62.5
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.0e-102 377.5 313 61.3
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 4.9e-102 375.2 229 79.0
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.1e-100 369.8 287 64.8
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 3.5e-100 369.0 310 61.9
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 2.5e-93 346.3 276 60.5
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.5e-87 327.0 230 71.7
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.9e-85 320.1 283 54.1
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 7.2e-85 318.2 298 53.0
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 7.4e-82 308.1 274 59.9
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 6.3e-81 305.1 291 54.6
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 6.3e-81 305.1 310 52.6
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 8.2e-81 304.7 277 55.2
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.8e-80 303.5 309 52.1
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 2.0e-79 300.1 285 53.3
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 4.5e-79 298.9 285 53.0
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 2.9e-78 296.2 279 56.3
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 6.5e-78 295.0 299 56.5
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 3.2e-77 292.7 273 54.9
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.8e-75 287.0 203 68.5
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 2.8e-73 279.6 228 61.4
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 9.1e-72 274.6 195 72.8
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 8.0e-68 261.5 247 53.8
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 2.6e-66 256.5 149 83.9
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.1e-64 251.1 189 67.2
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 9.1e-64 248.1 326 49.1
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 4.5e-63 245.7 214 60.7
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 2.5e-61 240.0 148 77.7
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 1.3e-57 227.6 183 64.5
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 4.8e-57 225.7 210 53.3
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 1.2e-55 221.1 217 52.1
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 6.3e-49 198.7 293 37.2
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 6.3e-49 198.7 152 67.1
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 1.0e-35 154.8 278 33.5
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 5.4e-32 142.5 322 28.3
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 2.5e-29 133.7 105 64.8
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 3.7e-25 119.8 294 28.9
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 4.9e-25 119.4 124 52.4
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 1.9e-24 117.5 133 50.4
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.1e-24 116.3 78 75.6
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 2.1e-23 114.0 288 28.5
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 1.5e-21 107.8 291 30.9
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.6e-12 77.8 184 38.0
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 2.4e-11 73.9 58 56.9
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 3.2e-08 63.5 45 62.2
FvH4_7g19410 Fragaria vesca HOM05D001952 ORTHO05D005047 6.0e-07 59.3 39 71.8


User provided reference genes

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