Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 1.6e-71 272.7 143 100.0
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 6.7e-62 240.7 143 90.2
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 5.3e-59 231.1 143 86.0
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 1.0e-57 226.9 143 81.8
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 2.2e-57 225.7 142 83.1
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 8.5e-57 223.8 133 84.2
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 1.9e-56 222.6 143 81.8
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.5e-56 222.2 143 82.5
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.5e-56 222.2 143 82.5
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 5.5e-56 221.1 143 80.4
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 9.4e-56 220.3 143 81.1
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 1.6e-55 219.5 143 81.1
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 2.1e-55 219.2 143 79.7
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 1.0e-54 216.9 143 81.8
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 1.8e-54 216.1 143 81.8
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 3.0e-54 215.3 143 80.4
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 4.0e-54 214.9 143 78.3
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 4.0e-54 214.9 143 80.4
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 6.7e-54 214.2 137 79.6
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 6.7e-54 214.2 143 79.0
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 8.8e-54 213.8 137 78.8
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 8.8e-54 213.8 143 81.1
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 3.3e-53 211.8 143 78.3
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 4.4e-53 211.5 137 78.8
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 7.5e-53 210.7 135 80.0
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 1.3e-52 209.9 143 78.3
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.2e-52 209.1 143 76.9
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 2.2e-52 209.1 138 76.8
ClCG10G010560 Citrullus lanatus HOM05D005449 ORTHO05D006916 2.8e-52 208.8 155 74.2
Cc01_g20940 Coffea canephora HOM05D005449 ORTHO05D006916 1.4e-51 206.5 143 75.5
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 2.4e-51 205.7 147 76.2
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 3.1e-51 205.3 143 76.9
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 4.1e-51 204.9 126 83.3
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 4.1e-51 204.9 167 67.7
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 7.0e-51 204.1 143 77.6
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 7.0e-51 204.1 126 82.5
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 9.1e-51 203.8 145 76.6
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 9.1e-51 203.8 146 78.1
COL.COLO4_23333 Corchorus olitorius HOM05D005449 ORTHO05D006916 1.2e-50 203.4 137 75.2
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 2.0e-50 202.6 143 75.5
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 2.0e-50 202.6 138 76.8
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 2.0e-50 202.6 138 76.8
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 2.0e-50 202.6 128 82.0
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 3.5e-50 201.8 134 77.6
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 3.5e-50 201.8 137 75.2
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 5.9e-50 201.1 126 81.7
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 5.9e-50 201.1 134 79.1
Rhsim09G0186400 Rhododendron simsii HOM05D005449 ORTHO05D006916 5.9e-50 201.1 160 68.8
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 7.7e-50 200.7 145 73.8
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 7.7e-50 200.7 148 74.3
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 1.0e-49 200.3 139 76.3
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 1.0e-49 200.3 143 74.8
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 1.3e-49 199.9 138 76.1
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 1.3e-49 199.9 147 72.8
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 1.3e-49 199.9 143 77.6
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 1.7e-49 199.5 134 76.9
PSO675G2222 Papaver somniferum HOM05D005449 ORTHO05D006916 1.7e-49 199.5 134 78.4
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 1.7e-49 199.5 139 75.5
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 2.2e-49 199.1 143 76.9
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 5.0e-49 198.0 143 74.8
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 5.0e-49 198.0 143 74.1
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 6.5e-49 197.6 145 73.8
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 6.5e-49 197.6 145 73.8
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 6.5e-49 197.6 143 74.8
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 1.5e-48 196.4 143 76.2
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 5.5e-48 194.5 143 75.5
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 5.5e-48 194.5 127 79.5
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 5.5e-48 194.5 116 83.6
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 5.5e-48 194.5 111 89.2
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 7.2e-48 194.1 143 74.1
Ah.08g213380 Amaranthus hybridus HOM05D005449 ORTHO05D006916 1.6e-47 193.0 131 74.8
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 1.6e-47 193.0 130 80.0
Nitab4.5_0008438g0020 Nicotiana tabacum HOM05D005449 ORTHO05D006916 1.6e-47 193.0 143 74.1
EL10Ac7g17526 Beta vulgaris HOM05D005449 ORTHO05D006916 3.6e-47 191.8 141 72.3
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 3.6e-47 191.8 143 72.0
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 1.4e-46 189.9 120 80.0
Peaxi162Scf00445g00079 Petunia axillaris HOM05D005449 ORTHO05D006916 2.3e-46 189.1 143 74.1
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 2.3e-46 189.1 159 67.9
Peaxi162Scf00045g01343 Petunia axillaris HOM05D005449 ORTHO05D006916 3.0e-46 188.7 143 72.7
Solyc08g005920.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 8.8e-46 187.2 143 72.0
PGSC0003DMG400004469 Solanum tuberosum HOM05D005449 ORTHO05D006916 8.8e-46 187.2 143 72.7
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 1.2e-45 186.8 143 71.3
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 1.2e-45 186.8 140 74.3
Sopen08g001890 Solanum pennellii HOM05D005449 ORTHO05D006916 3.4e-45 185.3 143 70.6
arahy.Tifrunner.gnm1.ann1.X8E93Z Arachis hypogaea HOM05D005449 ORTHO05D006916 5.7e-45 184.5 145 69.0
arahy.Tifrunner.gnm1.ann1.YB8ZH2 Arachis hypogaea HOM05D005449 ORTHO05D006916 5.7e-45 184.5 145 69.0
Glyma.08G143600 Glycine max HOM05D005449 ORTHO05D006916 5.7e-45 184.5 143 69.9
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 3.7e-44 181.8 146 67.1
TPR.G2165 Trifolium pratense HOM05D005449 ORTHO05D006916 2.4e-43 179.1 147 66.7
Nitab4.5_0000860g0030 Nicotiana tabacum HOM05D005449 ORTHO05D006916 9.1e-43 177.2 143 69.9
VMungo0251G2862 Vigna mungo HOM05D000587 ORTHO05D000929 1.6e-42 176.4 143 67.8
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 2.7e-42 175.6 143 66.4
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 4.5e-42 174.9 140 70.0
Psat7g049640 Pisum sativum HOM05D005449 ORTHO05D006916 5.9e-42 174.5 150 64.0
Sc04g0009560 Simmondsia chinensis HOM05D005449 ORTHO05D006916 5.9e-42 174.5 150 60.7
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 1.0e-41 173.7 119 76.5
ATR0582G023 Amborella trichopoda HOM05D005449 ORTHO05D006916 8.0e-39 164.1 143 62.2
Zm00001eb346090 Zea mays HOM05D005449 ORTHO05D006916 1.0e-38 163.7 118 72.0
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 2.8e-36 155.6 85 91.8
AUR62008679 Chenopodium quinoa HOM05D005449 ORTHO05D006916 6.3e-36 154.5 153 59.5
Lsat_1_v5_gn_7_53001 Lactuca sativa HOM05D005449 ORTHO05D006916 6.3e-36 154.5 130 69.2
HPP92_010681 Vanilla planifolia HOM05D005449 ORTHO05D006916 2.4e-35 152.5 120 67.5
RcHm_v2.0_Chr6g0264541 Rosa chinensis HOM05D005449 ORTHO05D006916 3.1e-35 152.1 106 79.2
Atru.chr5.1135 Acer truncatum HOM05D005449 ORTHO05D006916 1.9e-32 142.9 136 63.2
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 5.6e-32 141.4 119 65.5
Ciclev10033890m.g Citrus clementina HOM05D005449 ORTHO05D006916 5.6e-32 141.4 151 55.6
C08p28130 Brassica napus HOM05D005449 ORTHO05D006916 9.5e-32 140.6 119 64.7
BraA09t40054Z Brassica rapa HOM05D005449 ORTHO05D006916 9.5e-32 140.6 119 64.7
Carub.0005s1933 Capsella rubella HOM05D005449 ORTHO05D006916 1.2e-31 140.2 119 63.9
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 2.1e-31 139.4 119 64.7
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 2.1e-31 139.4 119 64.7
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 2.8e-31 139.0 83 84.3
SMO367G0046 Selaginella moellendorffii HOM05D005449 ORTHO05D006916 3.6e-31 138.7 112 65.2
CARHR162730 Cardamine hirsuta HOM05D005449 ORTHO05D006916 6.1e-31 137.9 139 58.3
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 6.1e-31 137.9 119 65.5
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 8.0e-31 137.5 84 83.3
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 1.8e-30 136.3 86 80.2
SEGI_14448 Sequoiadendron giganteum HOM05D005449 ORTHO05D006916 2.3e-30 136.0 131 58.0
AUR62025565 Chenopodium quinoa HOM05D005449 ORTHO05D006916 5.2e-30 134.8 153 53.6
Pp3c14_5880 Physcomitrium patens HOM05D005449 ORTHO05D006916 6.8e-30 134.4 117 58.1
HanXRQChr10g0316901 Helianthus annuus HOM05D005449 ORTHO05D006916 2.0e-29 132.9 96 75.0
HanXRQChr06g0163731 Helianthus annuus HOM05D005449 ORTHO05D006916 2.6e-29 132.5 86 80.2
Atru.chr11.2437 Acer truncatum HOM05D005449 ORTHO05D006916 8.3e-28 127.5 174 48.3
FvH4_7g29690 Fragaria vesca HOM05D005449 ORTHO05D006916 9.2e-27 124.0 81 79.0
PSO675G2923 Papaver somniferum HOM05D005449 ORTHO05D006916 3.0e-25 119.0 89 70.8
Actinidia07783 Actinidia chinensis HOM05D005449 ORTHO05D006916 1.1e-24 117.1 73 82.2
AagrBONN_evm.TU.Sc2ySwM_117.989 Anthoceros agrestis HOM05D005449 ORTHO05D006916 1.6e-23 113.2 125 52.0
Mapoly0162s0020 Marchantia polymorpha HOM05D005449 ORTHO05D006916 4.4e-21 105.1 135 45.9
Zm00001eb085090 Zea mays HOM05D005449 ORTHO05D006916 3.3e-16 89.0 111 48.6
Manes.01G220201 Manihot esculenta HOM05D005449 ORTHO05D006916 4.7e-15 85.1 84 57.1
Zm00001eb340530 Zea mays HOM05D005449 ORTHO05D006916 6.2e-15 84.7 114 47.4
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 2.9e-12 75.9 85 51.8
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 3.7e-12 75.5 63 58.7
FAN17G0623 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.1e-10 69.7 43 83.7
Aa31LG10G7880 Aethionema arabicum HOM05D005449 ORTHO05D006916 2.1e-07 59.7 74 51.4
Hma1.2p1_0494F.1_g165230 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.8e-07 59.3 33 78.8
C06p20730 Brassica napus HOM05D005449 ORTHO05D027985 3.6e-07 58.9 66 51.5
BolC6t37256H Brassica oleracea HOM05D005449 ORTHO05D027985 3.6e-07 58.9 66 51.5


User provided reference genes

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