Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 0.0e+00 1384.8 833 100.0
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 1.9e-265 919.5 894 72.3
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 7.5e-246 854.4 842 71.7
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 1.0e-239 833.9 843 69.2
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.9e-237 825.9 845 68.3
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 8.0e-232 807.7 845 67.7
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 3.5e-203 712.6 919 53.1
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 8.7e-202 708.0 851 63.2
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 3.8e-197 692.6 921 54.1
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 1.2e-190 671.0 844 57.7
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 1.6e-187 660.6 862 52.6
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 1.0e-186 657.9 862 57.0
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 4.9e-181 639.0 876 54.6
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 4.2e-180 636.0 875 55.2
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.7e-179 633.3 861 52.5
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 2.0e-174 617.1 850 55.5
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 2.5e-172 610.1 856 52.7
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 3.9e-170 602.8 1021 48.1
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 2.5e-169 600.1 856 52.3
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 1.7e-168 597.4 866 51.3
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 6.3e-168 595.5 866 50.9
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 1.8e-167 594.0 860 53.1
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 3.7e-160 569.7 849 51.6
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 7.2e-156 555.4 905 47.2
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 7.2e-156 555.4 805 53.5
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 2.0e-150 537.3 860 50.3
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 3.2e-148 530.0 824 50.6
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 5.5e-148 529.3 872 48.1
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 6.1e-147 525.8 840 49.4
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 4.4e-145 519.6 815 50.2
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.6e-142 511.1 769 49.3
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 4.5e-142 509.6 843 49.2
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 3.8e-141 506.5 804 48.9
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 1.9e-140 504.2 869 50.7
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 3.2e-140 503.4 769 49.5
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 5.5e-140 502.7 902 45.2
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 4.7e-139 499.6 869 51.1
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 2.0e-137 494.2 910 47.5
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 2.8e-136 490.3 832 50.4
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 3.7e-136 490.0 896 43.8
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 1.2e-134 485.0 898 44.9
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 2.0e-134 484.2 890 46.7
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 7.7e-134 482.3 848 45.5
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 2.9e-133 480.3 940 42.1
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 2.1e-131 474.2 816 43.5
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 2.3e-130 470.7 847 48.4
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 4.0e-130 469.9 837 47.4
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 3.4e-129 466.8 959 41.9
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 2.8e-128 463.8 881 44.5
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 8.3e-128 462.2 848 43.6
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 1.8e-127 461.1 854 45.0
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 2.4e-127 460.7 892 46.0
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 3.5e-126 456.8 841 48.4
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 5.6e-124 449.5 451 60.8
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 9.5e-124 448.7 824 46.2
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 2.8e-123 447.2 873 45.2
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 6.8e-122 442.6 872 42.9
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 4.9e-120 436.4 745 50.1
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 2.4e-119 434.1 474 57.6
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 5.0e-117 426.4 793 42.7
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 1.2e-115 421.8 816 45.8
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 1.2e-115 421.8 729 43.3
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 1.4e-111 408.3 494 53.4
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 2.4e-111 407.5 832 43.6
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 7.0e-111 406.0 836 41.0
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 1.2e-110 405.2 845 43.1
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.1e-110 404.4 542 63.1
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 1.7e-109 401.4 850 41.1
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 2.3e-109 401.0 838 40.6
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 3.0e-109 400.6 849 44.6
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 9.5e-108 395.6 783 41.1
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 2.8e-107 394.0 852 41.1
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 8.1e-107 392.5 845 42.4
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.3e-106 391.0 496 50.6
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 3.1e-106 390.6 497 51.3
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 4.0e-106 390.2 705 45.2
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 5.2e-106 389.8 785 41.5
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 4.4e-105 386.7 911 39.0
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 9.9e-105 385.6 784 45.5
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 2.9e-104 384.0 926 38.7
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 4.9e-104 383.3 434 56.2
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 3.5e-102 377.1 494 49.8
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 6.0e-102 376.3 704 43.2
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 3.9e-101 373.6 880 39.7
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 7.3e-100 369.4 841 38.5
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 1.2e-99 368.6 705 43.7
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 2.6e-97 360.9 837 37.8
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 5.8e-97 359.8 836 42.2
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 6.4e-96 356.3 829 35.2
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 8.1e-91 339.3 432 48.8
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 7.6e-89 332.8 483 47.8
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 3.0e-85 320.9 457 46.6
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 2.5e-84 317.8 845 36.0
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 1.3e-83 315.5 433 49.2
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 6.9e-82 309.7 830 38.0
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 4.2e-79 300.4 436 45.4
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.6e-54 218.8 487 36.6
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.6e-54 218.8 487 36.6
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 1.1e-50 206.1 343 44.3
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 1.1e-47 196.1 149 75.2
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 1.9e-47 195.3 650 36.9
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 7.2e-47 193.4 168 69.0
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 3.1e-34 151.4 375 37.3
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 9.1e-34 149.8 901 26.4
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 6.5e-32 143.7 308 37.3
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 1.0e-29 136.3 133 60.2
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 5.2e-29 134.0 165 52.1
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 1.5e-28 132.5 120 64.2
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 9.7e-28 129.8 105 66.7
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 9.7e-28 129.8 269 48.0
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 2.2e-24 118.6 223 41.7
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 3.2e-23 114.8 212 36.8
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 2.1e-22 112.1 431 32.5
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 2.2e-19 102.1 136 50.7
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 9.1e-18 96.7 60 76.7
RcHm_v2.0_Chr4g0421911 Rosa chinensis HOM05D006481 ORTHO05D008160 5.5e-15 87.4 296 38.9
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 4.4e-12 77.8 105 43.8
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 9.2e-10 70.1 51 70.6
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 4.5e-09 67.8 59 57.6
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 1.5e-07 62.8 35 80.0
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 4.3e-07 61.2 56 55.4


User provided reference genes

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