Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 4.1e-65 251.1 119 100.0
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 6.4e-42 174.1 135 72.6
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 7.9e-40 167.2 130 70.0
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 7.6e-35 150.6 123 68.3
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 7.6e-35 150.6 123 66.7
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 3.8e-34 148.3 123 65.9
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 4.9e-34 147.9 118 66.1
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 5.5e-33 144.4 123 65.9
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.6e-32 142.9 123 64.2
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 1.3e-21 106.7 112 50.9
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 2.8e-21 105.5 111 57.7
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 2.8e-21 105.5 113 50.4
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.8e-20 102.8 120 48.3
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 3.1e-20 102.1 111 48.6
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 3.1e-20 102.1 120 48.3
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 3.1e-20 102.1 116 54.3
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 4.1e-20 101.7 104 51.0
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 5.3e-20 101.3 109 53.2
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 6.9e-20 100.9 111 51.4
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 1.5e-19 99.8 117 47.9
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 2.0e-19 99.4 108 54.6
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.6e-19 99.0 106 50.9
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 3.4e-19 98.6 104 48.1
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 3.4e-19 98.6 104 48.1
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 4.5e-19 98.2 113 48.7
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 7.7e-19 97.4 105 54.3
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 1.0e-18 97.1 105 48.6
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 5.0e-18 94.7 105 46.7
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 6.5e-18 94.4 101 51.5
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 8.5e-18 94.0 107 51.4
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 1.1e-17 93.6 101 50.5
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 1.9e-17 92.8 115 46.1
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 5.5e-17 91.3 109 45.9
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 7.2e-17 90.9 106 50.0
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 1.2e-16 90.1 97 52.6
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 2.7e-16 89.0 106 48.1
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 2.7e-16 89.0 99 49.5
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 4.6e-16 88.2 69 65.2
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 6.1e-16 87.8 106 47.2
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 1.4e-15 86.7 107 45.8
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 1.4e-15 86.7 110 40.9
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 1.4e-15 86.7 119 42.9
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 3.9e-15 85.1 90 47.8
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 5.1e-15 84.7 98 48.0
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 6.7e-15 84.3 108 44.4
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 6.7e-15 84.3 113 44.2
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 8.8e-15 84.0 49 73.5
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 2.0e-14 82.8 115 40.0
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 2.0e-14 82.8 103 47.6
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 2.0e-14 82.8 108 48.1
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 2.5e-14 82.4 111 45.0
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 2.5e-14 82.4 48 70.8
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 2.5e-14 82.4 48 70.8
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 2.5e-14 82.4 48 70.8
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 2.5e-14 82.4 48 70.8
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 2.5e-14 82.4 48 70.8
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 2.5e-14 82.4 111 42.3
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 2.5e-14 82.4 83 50.6
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 3.3e-14 82.0 41 82.9
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 3.3e-14 82.0 60 61.7
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 4.3e-14 81.6 111 45.9
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 4.3e-14 81.6 107 45.8
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 4.3e-14 81.6 106 42.5
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 5.7e-14 81.3 106 41.5
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 5.7e-14 81.3 100 45.0
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 7.4e-14 80.9 104 45.2
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 7.4e-14 80.9 100 44.0
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 9.7e-14 80.5 102 47.1
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 9.7e-14 80.5 93 46.2
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 1.3e-13 80.1 99 43.4
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 1.7e-13 79.7 88 51.1
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 2.2e-13 79.3 109 43.1
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.8e-13 79.0 88 46.6
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 3.7e-13 78.6 107 45.8
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 3.7e-13 78.6 103 45.6
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 3.7e-13 78.6 110 43.6
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 3.7e-13 78.6 110 42.7
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 4.8e-13 78.2 104 44.2
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 4.8e-13 78.2 104 44.2
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 6.3e-13 77.8 106 44.3
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 8.2e-13 77.4 104 41.3
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 1.1e-12 77.0 89 47.2
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 1.1e-12 77.0 109 43.1
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.4e-12 76.6 91 48.4
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 1.4e-12 76.6 102 43.1
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 1.4e-12 76.6 107 43.9
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 1.4e-12 76.6 57 63.2
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 1.8e-12 76.3 46 71.7
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 1.8e-12 76.3 105 42.9
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 1.8e-12 76.3 105 42.9
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 1.8e-12 76.3 57 56.1
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 2.4e-12 75.9 110 46.4
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 3.1e-12 75.5 84 46.4
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 5.3e-12 74.7 55 60.0
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 5.3e-12 74.7 57 59.6
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 6.9e-12 74.3 105 41.9
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 6.9e-12 74.3 46 71.7
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 9.1e-12 73.9 99 41.4
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 1.2e-11 73.6 84 44.0
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 1.5e-11 73.2 54 55.6
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 2.0e-11 72.8 79 49.4
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 2.6e-11 72.4 48 66.7
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 3.4e-11 72.0 112 39.3
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 5.9e-11 71.2 69 49.3
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 7.7e-11 70.9 109 36.7
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 1.0e-10 70.5 69 49.3
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 1.7e-10 69.7 85 42.4
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 2.2e-10 69.3 77 49.4
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 3.8e-10 68.6 43 62.8
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 5.0e-10 68.2 41 65.9
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 8.5e-10 67.4 40 67.5
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 1.9e-09 66.2 98 37.8
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 1.9e-09 66.2 73 50.7
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 3.2e-09 65.5 99 36.4
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 3.2e-09 65.5 71 49.3
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 4.2e-09 65.1 106 41.5
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 5.5e-09 64.7 39 64.1
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 1.2e-08 63.5 39 64.1
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 1.6e-08 63.2 90 36.7
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 1.6e-08 63.2 42 59.5
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 2.1e-08 62.8 93 41.9
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 2.1e-08 62.8 59 49.2
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 1.0e-07 60.5 39 59.0
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 1.8e-07 59.7 80 38.8
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 1.8e-07 59.7 39 59.0
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 3.0e-07 58.9 101 37.6
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 3.9e-07 58.5 93 38.7
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 3.9e-07 58.5 108 34.3
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 1.1e-06 57.0 39 59.0
Ciclev10026814m.g Citrus clementina HOM05D008232 ORTHO05D010390 4.4e-06 55.1 83 36.1
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 7.4e-06 54.3 92 33.7


User provided reference genes

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