Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 9.9e-153 543.5 291 100.0
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 1.2e-137 493.4 292 91.8
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 3.4e-129 465.3 291 86.3
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.9e-120 435.6 293 82.3
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 4.9e-120 434.9 292 81.8
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 4.6e-118 428.3 293 81.6
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 2.3e-117 426.0 293 82.3
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.3e-115 420.2 305 78.0
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 7.9e-110 401.0 292 78.4
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 1.9e-103 379.8 291 71.5
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 9.4e-103 377.5 305 71.5
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 4.7e-102 375.2 294 72.1
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 6.1e-102 374.8 303 72.6
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 1.0e-101 374.0 292 72.3
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 2.3e-101 372.9 302 71.2
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 3.9e-101 372.1 299 70.2
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 1.1e-100 370.5 299 69.9
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 4.4e-100 368.6 293 69.3
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 5.7e-100 368.2 293 71.7
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 7.4e-100 367.9 292 71.2
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 7.4e-100 367.9 287 73.2
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 9.7e-100 367.5 295 71.5
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 9.7e-100 367.5 294 70.1
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 9.7e-100 367.5 299 70.9
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 2.2e-99 366.3 292 71.2
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 6.3e-99 364.8 301 69.4
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 8.2e-99 364.4 299 72.2
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 8.2e-99 364.4 291 71.1
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 1.1e-98 364.0 298 71.1
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 1.1e-98 364.0 299 69.9
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.4e-98 363.6 306 68.6
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.8e-98 363.2 309 67.6
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.4e-98 362.8 301 70.4
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 2.4e-98 362.8 303 70.3
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 2.4e-98 362.8 293 70.3
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 3.1e-98 362.5 299 70.6
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 5.3e-98 361.7 310 69.0
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 5.3e-98 361.7 306 67.0
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 9.1e-98 360.9 295 69.8
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.2e-97 360.5 305 69.8
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 1.5e-97 360.1 293 70.0
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 2.6e-97 359.4 293 70.0
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 2.6e-97 359.4 298 70.1
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 4.5e-97 358.6 300 67.7
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 5.9e-97 358.2 301 70.1
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 1.0e-96 357.5 296 69.6
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.7e-96 356.7 291 68.4
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 2.2e-96 356.3 307 68.7
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 3.8e-96 355.5 298 68.1
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 6.5e-96 354.8 292 68.8
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 8.5e-96 354.4 253 75.9
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.1e-95 354.0 291 67.7
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 1.4e-95 353.6 291 67.7
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 1.9e-95 353.2 303 68.3
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 4.2e-95 352.1 294 68.4
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 5.5e-95 351.7 298 67.8
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 7.2e-95 351.3 291 70.4
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 1.2e-94 350.5 300 67.7
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.2e-94 350.5 299 68.9
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 1.6e-94 350.1 291 67.4
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 2.1e-94 349.7 299 67.9
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 3.6e-94 349.0 294 68.0
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 6.1e-94 348.2 297 67.3
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 8.0e-94 347.8 290 69.3
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 8.0e-94 347.8 295 67.1
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 1.0e-93 347.4 292 68.8
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.8e-93 346.7 301 66.4
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 1.8e-93 346.7 297 68.7
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 5.2e-93 345.1 292 68.5
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 1.1e-92 344.0 298 66.4
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 1.1e-92 344.0 292 67.1
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 1.5e-92 343.6 288 68.4
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 2.6e-92 342.8 293 67.6
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 5.7e-92 341.7 301 67.8
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 5.7e-92 341.7 299 66.9
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 2.2e-91 339.7 289 67.5
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 3.7e-91 339.0 294 67.0
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 4.8e-91 338.6 291 65.6
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 1.4e-90 337.0 302 66.9
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 1.8e-90 336.7 207 81.6
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.1e-90 335.9 296 67.2
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.1e-90 335.9 296 66.9
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 1.6e-89 333.6 298 66.1
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.6e-89 333.6 279 68.8
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 4.5e-89 332.0 275 66.9
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 7.7e-89 331.3 349 58.5
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 1.0e-88 330.9 294 65.6
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.7e-88 330.1 292 67.1
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 1.7e-88 330.1 294 66.3
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 1.5e-87 327.0 298 64.8
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 1.5e-87 327.0 303 64.0
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 1.9e-87 326.6 300 64.0
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 7.2e-87 324.7 294 64.3
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 7.2e-87 324.7 279 66.3
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 9.4e-87 324.3 291 64.9
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 3.6e-86 322.4 272 66.5
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 8.0e-86 321.2 248 71.4
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 8.0e-86 321.2 248 71.4
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 1.8e-85 320.1 296 64.2
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 1.8e-85 320.1 296 64.2
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 2.3e-85 319.7 248 71.4
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 5.2e-85 318.5 300 63.0
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 8.8e-85 317.8 360 55.6
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 1.5e-84 317.0 309 62.8
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 2.6e-84 316.2 291 62.9
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 2.6e-84 316.2 296 63.5
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 5.7e-84 315.1 301 61.8
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 5.7e-84 315.1 297 62.0
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.2e-83 313.2 298 61.7
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 3.7e-83 312.4 284 62.3
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 3.7e-83 312.4 195 80.0
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 8.3e-83 311.2 305 61.3
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 8.3e-83 311.2 293 61.8
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 8.3e-83 311.2 195 80.5
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 1.1e-82 310.8 293 61.8
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 1.4e-82 310.5 283 64.0
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 2.4e-82 309.7 296 62.8
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 4.1e-82 308.9 305 61.0
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 5.3e-82 308.5 251 68.1
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 5.3e-82 308.5 290 61.7
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 5.9e-81 305.1 329 57.1
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 2.9e-80 302.8 284 61.3
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 1.9e-79 300.1 296 63.2
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 7.2e-79 298.1 215 73.0
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 1.2e-78 297.4 274 63.9
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 2.7e-78 296.2 193 78.2
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 3.0e-77 292.7 363 52.9
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 2.2e-75 286.6 203 74.9
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 8.3e-75 284.6 300 57.3
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 4.1e-74 282.3 199 73.9
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 3.5e-73 279.3 293 55.6
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 4.5e-73 278.9 181 77.9
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 8.6e-72 274.6 209 70.3
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 1.1e-71 274.2 344 50.0
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.5e-71 273.9 254 62.2
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.9e-71 273.5 279 60.9
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 5.5e-71 271.9 183 76.0
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 9.5e-71 271.2 274 59.5
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 1.6e-70 270.4 202 70.3
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 2.6e-68 263.1 258 59.7
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 9.8e-68 261.2 238 58.8
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 9.8e-68 261.2 281 55.2
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 4.9e-67 258.8 245 62.9
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 7.5e-60 235.0 306 49.7
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 3.9e-56 222.6 181 64.1
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 6.6e-56 221.9 204 59.3
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 7.1e-50 201.8 193 61.7
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 2.1e-49 200.3 194 57.7
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 2.1e-46 190.3 212 54.7
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 2.2e-43 180.3 107 86.0
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 7.1e-34 148.7 295 39.7
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 4.6e-33 146.0 270 38.1
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 6.0e-33 145.6 109 68.8
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 3.0e-32 143.3 89 77.5
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 6.4e-27 125.6 183 42.1
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 1.4e-26 124.4 252 36.9
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 2.7e-25 120.2 78 83.3
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 5.6e-23 112.5 147 45.6
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 6.2e-22 109.0 110 54.5
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 1.8e-21 107.5 110 53.6
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 3.4e-20 103.2 87 59.8
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 6.7e-16 89.0 173 36.4
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 3.4e-12 76.6 63 65.1
VMungo0251G3374 Vigna mungo HOM05D004451 ORTHO05D005177 1.3e-06 58.2 48 66.7


User provided reference genes

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