Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G132600 Prunus persica HOM05D000395 ORTHO05D000088 5.8e-132 474.2 230 100.0
Prupe.7G039600 Prunus persica HOM05D000395 ORTHO05D000088 6.6e-43 178.3 321 36.8
Prupe.7G143500 Prunus persica HOM05D000395 ORTHO05D000088 2.8e-41 172.9 299 38.8
MD02G1159700 Malus domestica HOM05D000395 ORTHO05D000088 4.9e-38 162.2 243 44.9
MD02G1159800 Malus domestica HOM05D000395 ORTHO05D000088 2.1e-36 156.8 248 42.3
MD02G1160300 Malus domestica HOM05D000395 ORTHO05D000088 2.2e-30 136.7 241 39.0
MD15G1274400 Malus domestica HOM05D000395 ORTHO05D000088 7.1e-29 131.7 265 35.8
FvH4_1g14670 Fragaria vesca HOM05D000395 ORTHO05D000088 5.1e-27 125.6 275 36.7
FAN19G3035 Fragaria x ananassa HOM05D000395 ORTHO05D000088 5.1e-27 125.6 275 36.7
FvH4_7g02010 Fragaria vesca HOM05D000395 ORTHO05D000088 4.3e-26 122.5 262 36.3
FAN06G4020 Fragaria x ananassa HOM05D000395 ORTHO05D000088 4.3e-26 122.5 262 36.3
FvH4_6g38700 Fragaria vesca HOM05D000395 ORTHO05D000088 2.1e-25 120.2 283 31.8
FAN28G0564 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.8e-25 119.8 276 35.9
FAN19G3192 Fragaria x ananassa HOM05D000395 ORTHO05D000088 6.2e-25 118.6 260 34.2
RcHm_v2.0_Chr2g0134821 Rosa chinensis HOM05D000395 ORTHO05D000088 6.2e-25 118.6 260 36.2
FvH4_1g29250 Fragaria vesca HOM05D000395 ORTHO05D000088 1.4e-24 117.5 260 33.8
FAN26G1384 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.8e-24 117.1 276 35.5
Prupe.7G143900 Prunus persica HOM05D000395 ORTHO05D000088 5.3e-24 115.5 283 32.5
Prupe.7G044800 Prunus persica HOM05D000395 ORTHO05D000088 6.9e-24 115.2 242 35.1
FAN28G0051 Fragaria x ananassa HOM05D000395 ORTHO05D000088 7.6e-23 111.7 260 34.2
QL06p043901 Quercus lobata HOM05D000395 ORTHO05D000088 2.2e-22 110.2 264 32.6
FAN03G2610 Fragaria x ananassa HOM05D000395 ORTHO05D000088 3.8e-22 109.4 256 35.2
FAN14G4811 Fragaria x ananassa HOM05D000395 ORTHO05D000088 8.4e-22 108.2 295 32.2
FAN23G2287 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.4e-21 106.7 247 34.8
MD15G1302000 Malus domestica HOM05D000395 ORTHO05D000088 1.2e-20 104.4 263 31.6
RcHm_v2.0_Chr2g0103521 Rosa chinensis HOM05D000395 ORTHO05D000088 6.0e-20 102.1 339 27.7
RcHm_v2.0_Chr2g0103541 Rosa chinensis HOM05D000395 ORTHO05D000088 3.0e-19 99.8 300 32.3
CiPaw.02G012600 Carya illinoinensis HOM05D000395 ORTHO05D000088 3.9e-19 99.4 277 30.3
MD00G1022100 Malus domestica HOM05D000395 ORTHO05D000088 5.1e-19 99.0 269 32.3
FAN05G2254 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.1e-18 97.8 295 30.2
MD02G1159900 Malus domestica HOM05D000395 ORTHO05D000088 3.3e-18 96.3 173 39.9
Prupe.3G083400 Prunus persica HOM05D000395 ORTHO05D000088 3.3e-18 96.3 264 32.2
TPR.G14798 Trifolium pratense HOM05D000395 ORTHO05D000088 5.6e-18 95.5 265 27.2
FvH4_1g14680 Fragaria vesca HOM05D000395 ORTHO05D000088 1.6e-17 94.0 293 30.7
QL02p075828 Quercus lobata HOM05D000395 ORTHO05D000088 6.2e-17 92.0 291 27.1
Lj5g0011145 Lotus japonicus HOM05D000395 ORTHO05D000088 8.1e-17 91.7 256 29.3
Prupe.7G044500 Prunus persica HOM05D000395 ORTHO05D000088 1.4e-16 90.9 179 35.8
RcHm_v2.0_Chr2g0152181 Rosa chinensis HOM05D000395 ORTHO05D000088 1.8e-16 90.5 83 54.2
Prupe.7G143600 Prunus persica HOM05D000395 ORTHO05D000088 2.4e-16 90.1 267 28.8
FvH4_1g14700 Fragaria vesca HOM05D000395 ORTHO05D000088 5.3e-16 89.0 274 31.0
Prupe.7G143700 Prunus persica HOM05D000395 ORTHO05D000088 9.0e-16 88.2 261 29.9
CiPaw.01G027300 Carya illinoinensis HOM05D000395 ORTHO05D000088 1.5e-15 87.4 301 26.6
FAN28G2202 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.0e-15 87.0 291 29.9
Thecc.01G047200 Theobroma cacao HOM05D000395 ORTHO05D000088 2.0e-15 87.0 259 27.0
Manes.07G115200 Manihot esculenta HOM05D000395 ORTHO05D000088 2.6e-15 86.7 273 28.6
Lj2g0003753 Lotus japonicus HOM05D000395 ORTHO05D000088 4.5e-15 85.9 256 29.3
CANSAT01G1395 Cannabis sativa HOM05D000395 ORTHO05D000088 5.8e-15 85.5 254 31.5
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 9.9e-15 84.7 264 27.3
MD00G1020600 Malus domestica HOM05D000395 ORTHO05D000088 1.3e-14 84.3 180 33.9
FvH4_6g38690 Fragaria vesca HOM05D000395 ORTHO05D000088 2.2e-14 83.6 83 49.4
RcHm_v2.0_Chr7g0227261 Rosa chinensis HOM05D000395 ORTHO05D000088 2.9e-14 83.2 220 32.7
RcHm_v2.0_Chr7g0227351 Rosa chinensis HOM05D000395 ORTHO05D000088 2.9e-14 83.2 273 27.1
TWI09G0601 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 2.9e-14 83.2 220 31.4
Medtr1g035460 Medicago truncatula HOM05D000395 ORTHO05D000088 4.9e-14 82.4 262 25.6
Manes.10G031300 Manihot esculenta HOM05D000395 ORTHO05D000088 6.4e-14 82.0 282 27.0
MD02G1160000 Malus domestica HOM05D000395 ORTHO05D000088 8.4e-14 81.6 190 32.1
Cpa.g.sc132.62 Carica papaya HOM05D000395 ORTHO05D000088 1.4e-13 80.9 134 37.3
Lj1g0013794 Lotus japonicus HOM05D000395 ORTHO05D000088 1.4e-13 80.9 250 27.2
COL.COLO4_27400 Corchorus olitorius HOM05D000395 ORTHO05D000088 1.9e-13 80.5 270 29.3
Thecc.01G046900 Theobroma cacao HOM05D000395 ORTHO05D000088 1.9e-13 80.5 278 27.3
Prupe.7G143100 Prunus persica HOM05D000395 ORTHO05D000088 2.4e-13 80.1 232 32.3
TWI09G0341 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 4.2e-13 79.3 85 47.1
Gorai.008G071600 Gossypium raimondii HOM05D000395 ORTHO05D000088 5.4e-13 79.0 251 29.1
RcHm_v2.0_Chr2g0103551 Rosa chinensis HOM05D000395 ORTHO05D000088 7.1e-13 78.6 241 28.6
FAN28G1435 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.2e-12 77.8 239 31.4
RcHm_v2.0_Chr2g0103471 Rosa chinensis HOM05D000395 ORTHO05D000088 1.2e-12 77.8 81 45.7
FAN19G1815 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.6e-12 77.4 235 33.2
RcHm_v2.0_Chr2g0152161 Rosa chinensis HOM05D000395 ORTHO05D000088 1.6e-12 77.4 170 37.1
COL.COLO4_22201 Corchorus olitorius HOM05D000395 ORTHO05D000088 2.1e-12 77.0 228 28.9
QL05p085016 Quercus lobata HOM05D000395 ORTHO05D000088 2.1e-12 77.0 263 26.6
COL.COLO4_03592 Corchorus olitorius HOM05D000395 ORTHO05D000088 3.5e-12 76.3 205 30.7
FvH4_1g14650 Fragaria vesca HOM05D000395 ORTHO05D000088 4.6e-12 75.9 240 26.7
FvH4_1g14660 Fragaria vesca HOM05D000395 ORTHO05D000088 6.0e-12 75.5 167 33.5
Phvul.007G041900 Phaseolus vulgaris HOM05D000395 ORTHO05D000088 7.9e-12 75.1 229 30.1
Prupe.6G229600 Prunus persica HOM05D000395 ORTHO05D000088 7.9e-12 75.1 220 27.3
Prupe.7G143800 Prunus persica HOM05D000395 ORTHO05D000088 7.9e-12 75.1 127 38.6
Thecc.01G047000 Theobroma cacao HOM05D000395 ORTHO05D000088 7.9e-12 75.1 279 27.2
Manes.07G112905 Manihot esculenta HOM05D000395 ORTHO05D000088 1.0e-11 74.7 245 28.6
Sabra01G0175400 Salix brachista HOM05D000395 ORTHO05D000088 1.0e-11 74.7 284 27.1
RcHm_v2.0_Chr2g0103481 Rosa chinensis HOM05D000395 ORTHO05D000088 1.8e-11 73.9 262 29.4
Duzib264G0510 Durio zibethinus HOM05D000395 ORTHO05D000088 3.0e-11 73.2 337 24.9
Gohir.A02G160900 Gossypium hirsutum HOM05D000395 ORTHO05D000088 3.0e-11 73.2 278 26.6
Gorai.013G245600 Gossypium raimondii HOM05D000395 ORTHO05D000088 3.0e-11 73.2 251 29.9
CANSAT01G0137 Cannabis sativa HOM05D000395 ORTHO05D000088 3.9e-11 72.8 261 25.7
QL05p084622 Quercus lobata HOM05D000395 ORTHO05D000088 3.9e-11 72.8 263 26.2
QL05p084669 Quercus lobata HOM05D000395 ORTHO05D000088 3.9e-11 72.8 263 26.2
Lj2g0004829 Lotus japonicus HOM05D000395 ORTHO05D000088 5.1e-11 72.4 280 26.4
FvH4_2g13150 Fragaria vesca HOM05D000011 ORTHO05D000157 1.1e-10 71.2 150 36.0
Gohir.D03G019600 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.1e-10 71.2 278 26.6
Gorai.003G020000 Gossypium raimondii HOM05D000395 ORTHO05D000088 1.1e-10 71.2 278 26.6
Gohir.A10G093700 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.9e-10 70.5 262 27.1
Lj2g0019967 Lotus japonicus HOM05D000395 ORTHO05D000088 1.9e-10 70.5 283 25.8
Psat0s4106g0080 Pisum sativum HOM05D000395 ORTHO05D000088 1.9e-10 70.5 214 29.0
COL.COLO4_22195 Corchorus olitorius HOM05D000395 ORTHO05D000088 2.5e-10 70.1 281 26.7
RcHm_v2.0_Chr2g0103561 Rosa chinensis HOM05D000395 ORTHO05D000088 2.5e-10 70.1 129 38.8
FAN26G0161 Fragaria x ananassa HOM05D000395 ORTHO05D000088 3.3e-10 69.7 229 25.8
FAN14G0529 Fragaria x ananassa HOM05D000395 ORTHO05D000088 4.3e-10 69.3 68 51.5
Lj6g0021528 Lotus japonicus HOM05D000395 ORTHO05D000088 4.3e-10 69.3 223 25.6
Manes.07G115300 Manihot esculenta HOM05D000395 ORTHO05D000088 1.3e-09 67.8 250 24.4
Solyc02g021260.3 Solanum lycopersicum HOM05D000395 ORTHO05D000088 1.3e-09 67.8 251 25.5
TWI09G0236 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 1.3e-09 67.8 117 35.9
COL.COLO4_27399 Corchorus olitorius HOM05D000395 ORTHO05D000088 1.6e-09 67.4 220 30.5
CANSAT01G2675 Cannabis sativa HOM05D000395 ORTHO05D000088 2.1e-09 67.0 194 31.4
Manes.07G115100 Manihot esculenta HOM05D000395 ORTHO05D000088 2.1e-09 67.0 253 28.9
TWI09G1611 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 2.1e-09 67.0 86 41.9
Medtr3g061350 Medicago truncatula HOM05D000395 ORTHO05D000088 3.7e-09 66.2 234 27.4
CANSAT01G2152 Cannabis sativa HOM05D000395 ORTHO05D000088 4.8e-09 65.9 141 31.9
COL.COLO4_11486 Corchorus olitorius HOM05D000258 ORTHO05D000153 4.8e-09 65.9 198 30.3
Gohir.A12G067500 Gossypium hirsutum HOM05D000395 ORTHO05D000088 4.8e-09 65.9 110 34.5
Gorai.008G071300 Gossypium raimondii HOM05D000395 ORTHO05D000088 4.8e-09 65.9 110 34.5
Medtr3g061330 Medicago truncatula HOM05D000395 ORTHO05D000088 6.2e-09 65.5 212 26.4
CANSAT78G1395 Cannabis sativa HOM05D000395 ORTHO05D000088 8.1e-09 65.1 97 41.2
Gohir.A02G160850 Gossypium hirsutum HOM05D000395 ORTHO05D000088 8.1e-09 65.1 273 23.4
Manes.10G033300 Manihot esculenta HOM05D000395 ORTHO05D000088 8.1e-09 65.1 244 26.2
FvH4_6g29400 Fragaria vesca HOM05D000395 ORTHO05D000088 1.1e-08 64.7 64 50.0
QL02p075847 Quercus lobata HOM05D000395 ORTHO05D000088 1.1e-08 64.7 133 33.1
TWI73G0729 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 1.1e-08 64.7 273 27.1
TAR381G0288 Trochodendron aralioides HOM05D000395 ORTHO05D000088 1.1e-08 64.7 80 43.8
CANSAT01G0803 Cannabis sativa HOM05D000395 ORTHO05D000088 1.4e-08 64.3 151 31.1
FAN09G2039 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.4e-08 64.3 101 43.6
RcHm_v2.0_Chr2g0103461 Rosa chinensis HOM05D000395 ORTHO05D000088 1.4e-08 64.3 250 24.4
Peaxi162Scf00019g00226 Petunia axillaris HOM05D000395 ORTHO05D000088 1.8e-08 63.9 150 32.0
Psat3g152560 Pisum sativum HOM05D000395 ORTHO05D000088 1.8e-08 63.9 220 27.7
RcHm_v2.0_Chr2g0103501 Rosa chinensis HOM05D000395 ORTHO05D000088 1.8e-08 63.9 148 33.8
Gohir.D12G067900 Gossypium hirsutum HOM05D000395 ORTHO05D000088 2.4e-08 63.5 86 47.7
Gohir.D12G068125 Gossypium hirsutum HOM05D000395 ORTHO05D000088 2.4e-08 63.5 152 32.9
COL.COLO4_11372 Corchorus olitorius HOM05D000395 ORTHO05D000088 3.1e-08 63.2 246 27.6
Gohir.A12G067300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 3.1e-08 63.2 106 39.6
Lj1g0005488 Lotus japonicus HOM05D000395 ORTHO05D000088 3.1e-08 63.2 107 37.4
PGR102G2512 Punica granatum HOM05D000395 ORTHO05D000088 3.1e-08 63.2 240 27.1
Gohir.D12G067800 Gossypium hirsutum HOM05D000395 ORTHO05D000088 4.0e-08 62.8 106 39.6
Gorai.008G071200 Gossypium raimondii HOM05D000395 ORTHO05D000088 4.0e-08 62.8 106 39.6
Medtr3g061320 Medicago truncatula HOM05D000395 ORTHO05D000088 4.0e-08 62.8 183 27.9
Glyma.09G114900 Glycine max HOM05D000395 ORTHO05D000088 5.3e-08 62.4 275 28.0
Peaxi162Scf00463g00134 Petunia axillaris HOM05D000395 ORTHO05D000088 5.3e-08 62.4 84 40.5
Prupe.1G579400 Prunus persica HOM05D000395 ORTHO05D000088 5.3e-08 62.4 254 26.8
CANSAT01G3124 Cannabis sativa HOM05D000395 ORTHO05D000088 6.9e-08 62.0 146 31.5
CiPaw.01G027200 Carya illinoinensis HOM05D000395 ORTHO05D000088 6.9e-08 62.0 139 33.1
PSO339G4062 Papaver somniferum HOM05D000395 ORTHO05D000088 6.9e-08 62.0 95 37.9
PSO384G1984 Papaver somniferum HOM05D000395 ORTHO05D000088 6.9e-08 62.0 82 40.2
Solyc02g065350.3 Solanum lycopersicum HOM05D000395 ORTHO05D000088 6.9e-08 62.0 81 39.5
Sopen02g015560 Solanum pennellii HOM05D000395 ORTHO05D000088 6.9e-08 62.0 81 39.5
CANSAT01G3168 Cannabis sativa HOM05D000395 ORTHO05D000088 9.0e-08 61.6 197 29.4
FvH4_1g14690 Fragaria vesca HOM05D000395 ORTHO05D000088 9.0e-08 61.6 241 24.9
DCAR_021667 Daucus carota HOM05D000395 ORTHO05D000088 1.2e-07 61.2 110 32.7
SHI25390 Sapria himalayana HOM05D000395 ORTHO05D000088 1.2e-07 61.2 276 26.1
Sopen02g005730 Solanum pennellii HOM05D000395 ORTHO05D000088 1.2e-07 61.2 250 25.6
CANSAT01G3239 Cannabis sativa HOM05D000395 ORTHO05D000088 1.5e-07 60.8 284 25.4
CANSAT01G2731 Cannabis sativa HOM05D000395 ORTHO05D000088 2.0e-07 60.5 85 41.2
CAN.G1066.1 Capsicum annuum HOM05D000395 ORTHO05D000088 2.6e-07 60.1 84 35.7
TPR.G11170 Trifolium pratense HOM05D000395 ORTHO05D000088 2.6e-07 60.1 260 24.2
DCAR_003838 Daucus carota HOM05D000395 ORTHO05D000088 3.4e-07 59.7 105 34.3
Lj2g0006674 Lotus japonicus HOM05D000395 ORTHO05D000088 4.5e-07 59.3 269 24.9
COL.COLO4_11361 Corchorus olitorius HOM05D000395 ORTHO05D000088 7.6e-07 58.5 192 29.2
COL.COLO4_30629 Corchorus olitorius HOM05D000395 ORTHO05D000088 7.6e-07 58.5 251 24.7
CAN.G1308.4 Capsicum annuum HOM05D000395 ORTHO05D000088 1.0e-06 58.2 81 39.5
Gohir.A12G067600 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.0e-06 58.2 120 34.2
Sabra04G0084800 Salix brachista HOM05D000395 ORTHO05D000088 1.0e-06 58.2 77 39.0
Lj2g0006143 Lotus japonicus HOM05D000395 ORTHO05D000088 1.3e-06 57.8 242 24.8
Prupe.7G144000 Prunus persica HOM05D000395 ORTHO05D000088 1.3e-06 57.8 77 36.4
RcHm_v2.0_Chr2g0103451 Rosa chinensis HOM05D000395 ORTHO05D000088 1.3e-06 57.8 245 24.5
Gohir.D13G215300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.7e-06 57.4 199 29.1
Medtr3g098790 Medicago truncatula HOM05D000395 ORTHO05D000088 1.7e-06 57.4 87 33.3
CiPaw.01G027100 Carya illinoinensis HOM05D000395 ORTHO05D000088 2.2e-06 57.0 153 32.0
Gohir.A11G188800 Gossypium hirsutum HOM05D000395 ORTHO05D000088 2.2e-06 57.0 117 30.8
Gohir.A13G036700 Gossypium hirsutum HOM05D000395 ORTHO05D000088 2.2e-06 57.0 222 29.3
Gorai.007G209200 Gossypium raimondii HOM05D000395 ORTHO05D000088 2.2e-06 57.0 117 30.8
Prupe.7G144100 Prunus persica HOM05D000395 ORTHO05D000088 2.9e-06 56.6 76 35.5
CANSAT01G2326 Cannabis sativa HOM05D000395 ORTHO05D000088 3.8e-06 56.2 118 30.5
CANSAT78G0477 Cannabis sativa HOM05D000395 ORTHO05D000088 3.8e-06 56.2 85 41.2
Gohir.A12G068300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 3.8e-06 56.2 153 31.4
TPR.G14731 Trifolium pratense HOM05D000395 ORTHO05D000088 3.8e-06 56.2 251 23.1
THA.LOC104803466 Tarenaya hassleriana HOM05D000395 ORTHO05D000088 4.9e-06 55.8 80 37.5
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 6.4e-06 55.5 111 30.6
Glyma.09G117200 Glycine max HOM05D000395 ORTHO05D000088 6.4e-06 55.5 81 38.3
Gohir.D12G067950 Gossypium hirsutum HOM05D000395 ORTHO05D000088 6.4e-06 55.5 84 39.3
Psat6g099880 Pisum sativum HOM05D000395 ORTHO05D000088 6.4e-06 55.5 193 25.9
PGSC0003DMG400002784 Solanum tuberosum HOM05D000395 ORTHO05D000088 6.4e-06 55.5 81 35.8
COL.COLO4_25281 Corchorus olitorius HOM05D021497 ORTHO05D000088 8.4e-06 55.1 60 48.3
Eucgr.G00888 Eucalyptus grandis HOM05D000395 ORTHO05D000088 8.4e-06 55.1 248 24.2
Medtr6g043890 Medicago truncatula HOM05D000395 ORTHO05D000088 8.4e-06 55.1 249 22.9


User provided reference genes

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