Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G128800 Prunus persica HOM05D000851 ORTHO05D003023 2.7e-109 398.7 202 100.0
Prupe.8G229600 Prunus persica HOM05D000851 ORTHO05D003023 1.4e-105 386.3 202 97.0
MD05G1203200 Malus domestica HOM05D000851 ORTHO05D003023 3.6e-69 265.4 198 71.7
RcHm_v2.0_Chr6g0289141 Rosa chinensis HOM05D000851 ORTHO05D003023 1.7e-63 246.5 216 64.8
FvH4_2g22220 Fragaria vesca HOM05D000851 ORTHO05D003023 1.1e-57 227.3 217 59.9
FAN24G1431 Fragaria x ananassa HOM05D000851 ORTHO05D003023 1.1e-57 227.3 217 59.9
MD10G1190500 Malus domestica HOM05D000851 ORTHO05D003023 3.2e-57 225.7 194 63.4
FAN27G2886 Fragaria x ananassa HOM05D000851 ORTHO05D003023 2.7e-56 222.6 217 59.0
FAN20G1571 Fragaria x ananassa HOM05D000851 ORTHO05D003023 4.6e-56 221.9 217 58.5
FAN15G0482 Fragaria x ananassa HOM05D000851 ORTHO05D003023 2.3e-55 219.5 217 59.0
Cfa002348 Carpinus fangiana HOM05D000851 ORTHO05D003023 4.6e-48 195.3 201 56.2
QL04p081248 Quercus lobata HOM05D000851 ORTHO05D003023 3.3e-46 189.1 200 53.0
Haze_24557 Corylus avellana HOM05D000851 ORTHO05D003023 5.1e-39 165.2 203 49.3
Dinv34589 Davidia involucrata HOM05D000851 ORTHO05D003023 1.9e-38 163.3 203 48.3
CiPaw.04G183500 Carya illinoinensis HOM05D000851 ORTHO05D003023 4.8e-37 158.7 207 48.8
TAR636G0853 Trochodendron aralioides HOM05D000851 ORTHO05D003023 1.2e-32 144.1 189 46.6
TAR365G0801 Trochodendron aralioides HOM05D000851 ORTHO05D003023 7.8e-32 141.4 182 48.9
GSVIVG01000763001 Vitis vinifera HOM05D000851 ORTHO05D003023 3.0e-31 139.4 183 44.8
Ciclev10018827m.g Citrus clementina HOM05D000851 ORTHO05D003023 3.9e-31 139.0 188 47.3
Atru.chr5.1608 Acer truncatum HOM05D000851 ORTHO05D003023 1.3e-29 134.0 183 45.9
Lalb_Chr06g0162571 Lupinus albus HOM05D000851 ORTHO05D003023 2.8e-29 132.9 202 45.0
Thecc.01G264500 Theobroma cacao HOM05D000851 ORTHO05D003023 2.8e-29 132.9 185 49.7
Duzib211G0301 Durio zibethinus HOM05D000851 ORTHO05D003023 4.8e-29 132.1 207 45.4
Nn1g02635 Nelumbo nucifera HOM05D000851 ORTHO05D003023 6.2e-29 131.7 204 43.1
Ca_09700_v3 Cicer arietinum L. HOM05D000851 ORTHO05D003023 2.4e-28 129.8 195 43.6
CANSAT01G1353 Cannabis sativa HOM05D000851 ORTHO05D003023 2.6e-27 126.3 177 44.1
Nn3g19550 Nelumbo nucifera HOM05D000851 ORTHO05D003023 4.5e-27 125.6 177 47.5
Duzib133G0219 Durio zibethinus HOM05D000851 ORTHO05D003023 7.6e-27 124.8 210 43.8
Lj5g0019344 Lotus japonicus HOM05D000851 ORTHO05D003023 1.3e-26 124.0 196 43.9
Psat6g055960 Pisum sativum HOM05D000851 ORTHO05D003023 2.9e-26 122.9 198 42.9
TWI12G1468 Tripterygium wilfordii HOM05D000851 ORTHO05D003023 6.4e-26 121.7 200 37.0
Glyma.13G120400 Glycine max HOM05D000851 ORTHO05D003023 2.4e-25 119.8 194 43.3
Aqoxy5G00304 Aquilegia oxysepala HOM05D000851 ORTHO05D003023 3.2e-25 119.4 200 40.0
Potri.005G220600 Populus trichocarpa HOM05D000851 ORTHO05D003023 2.1e-24 116.7 181 42.0
Manes.01G200100 Manihot esculenta HOM05D000851 ORTHO05D003023 4.6e-24 115.5 190 41.6
Aqoxy2G03578 Aquilegia oxysepala HOM05D000851 ORTHO05D003023 3.0e-23 112.8 183 39.9
PSO210G5055 Papaver somniferum HOM05D000851 ORTHO05D003023 3.9e-23 112.5 191 39.3
PSO832G4493 Papaver somniferum HOM05D000851 ORTHO05D003023 3.9e-23 112.5 182 41.2
Phvul.007G178800 Phaseolus vulgaris HOM05D000851 ORTHO05D003023 3.9e-23 112.5 190 40.5
Dinv05261 Davidia involucrata HOM05D000851 ORTHO05D003023 1.1e-22 110.9 177 45.2
ClCG07G000700 Citrullus lanatus HOM05D000851 ORTHO05D003023 4.3e-22 109.0 191 39.3
Lj2C1156T1 Lonicera japonica HOM05D000851 ORTHO05D003023 5.6e-22 108.6 199 38.7
GSVIVG01036252001 Vitis vinifera HOM05D000851 ORTHO05D003023 5.6e-22 108.6 192 40.6
Haze_04382 Corylus avellana HOM05D000851 ORTHO05D003023 1.3e-21 107.5 195 39.5
Cfa006392 Carpinus fangiana HOM05D000851 ORTHO05D003023 2.1e-21 106.7 195 39.5
Cpa.g.c36424 Carica papaya HOM05D000851 ORTHO05D003023 2.8e-21 106.3 187 39.6
VMungo0720G2556 Vigna mungo HOM05D000851 ORTHO05D003023 3.7e-21 105.9 189 40.7
Oeu039685.3 Olea europaea HOM05D000851 ORTHO05D003023 1.4e-20 104.0 192 37.0
Sabra05G0169700 Salix brachista HOM05D000851 ORTHO05D003023 1.4e-20 104.0 178 42.7
Gohir.A08G045500 Gossypium hirsutum HOM05D000851 ORTHO05D003023 1.8e-20 103.6 203 40.9
DCAR_012523 Daucus carota HOM05D000851 ORTHO05D003023 3.1e-20 102.8 196 36.2
Gorai.004G056900 Gossypium raimondii HOM05D000851 ORTHO05D003023 3.1e-20 102.8 211 40.3
QL12p042978 Quercus lobata HOM05D001376 ORTHO05D003384 3.1e-20 102.8 100 56.0
Sabra02G0034200 Salix brachista HOM05D000851 ORTHO05D003023 3.1e-20 102.8 180 40.6
Rhsim13G0032000 Rhododendron simsii HOM05D000851 ORTHO05D003023 6.9e-20 101.7 203 37.4
MBI11_g10263_MAGBIO Magnolia biondii HOM05D000851 ORTHO05D003023 9.0e-20 101.3 186 38.7
CSS0020864 Camellia sinensis var. sinensis HOM05D000851 ORTHO05D003023 1.5e-19 100.5 188 38.3
CSS0046457 Camellia sinensis var. sinensis HOM05D000851 ORTHO05D003023 1.5e-19 100.5 188 38.3
Cc01_g18640 Coffea canephora HOM05D000851 ORTHO05D003023 2.0e-19 100.1 185 40.5
COL.COLO4_08269 Corchorus olitorius HOM05D000851 ORTHO05D003023 2.6e-19 99.8 194 39.7
Nitab4.5_0000086g0300 Nicotiana tabacum HOM05D000851 ORTHO05D003023 7.6e-19 98.2 175 37.1
CiPaw.07G069700 Carya illinoinensis HOM05D000851 ORTHO05D003023 1.0e-18 97.8 194 34.5
MELO3C014398.2 Cucumis melo HOM05D000851 ORTHO05D003023 1.0e-18 97.8 181 37.0
CsaV3_6G037150 Cucumis sativus L. HOM05D000851 ORTHO05D003023 1.0e-18 97.8 181 37.0
vmacro02637 Vaccinium macrocarpon HOM05D000851 ORTHO05D003023 1.0e-18 97.8 202 37.6
Potri.013G043400 Populus trichocarpa HOM05D000851 ORTHO05D003023 3.8e-18 95.9 185 37.3
Ciclev10027718m.g Citrus clementina HOM05D000851 ORTHO05D003023 4.9e-18 95.5 185 39.5
Gohir.A07G210300 Gossypium hirsutum HOM05D000851 ORTHO05D003023 4.9e-18 95.5 195 37.4
MBI04_g38147_MAGBIO Magnolia biondii HOM05D000851 ORTHO05D003023 6.5e-18 95.1 216 37.0
AUR62001061 Chenopodium quinoa HOM05D000851 ORTHO05D003023 8.4e-18 94.7 183 36.1
Gohir.D07G216300 Gossypium hirsutum HOM05D000851 ORTHO05D003023 8.4e-18 94.7 195 37.4
Gorai.013G104100 Gossypium raimondii HOM05D000851 ORTHO05D003023 8.4e-18 94.7 195 37.4
AUR62004890 Chenopodium quinoa HOM05D000851 ORTHO05D003023 1.1e-17 94.4 183 36.1
Nitab4.5_0004328g0010 Nicotiana tabacum HOM05D000851 ORTHO05D003023 3.2e-17 92.8 175 36.0
Sed0000665 Sechium edule HOM05D000851 ORTHO05D003023 3.2e-17 92.8 192 37.0
EL10Ac4g09075 Beta vulgaris HOM05D000851 ORTHO05D003023 5.5e-17 92.0 180 36.1
arahy.Tifrunner.gnm1.ann1.0I6I28 Arachis hypogaea HOM05D000851 ORTHO05D003023 7.1e-17 91.7 186 34.9
arahy.Tifrunner.gnm1.ann1.GYBK8P Arachis hypogaea HOM05D000851 ORTHO05D003023 9.3e-17 91.3 186 34.9
Eucgr.B02126 Eucalyptus grandis HOM05D000851 ORTHO05D003023 1.2e-16 90.9 193 38.3
Atru.chr2.860 Acer truncatum HOM05D000851 ORTHO05D003023 2.1e-16 90.1 186 34.9
Potri.019G012200 Populus trichocarpa HOM05D000851 ORTHO05D003023 3.5e-16 89.4 196 34.2
MBI11_g43388_MAGBIO Magnolia biondii HOM05D000851 ORTHO05D003023 4.6e-16 89.0 168 38.1
Sopen09g027900 Solanum pennellii HOM05D000851 ORTHO05D003023 7.9e-16 88.2 176 35.2
Prupe.6G346700 Prunus persica HOM05D000851 ORTHO05D003023 1.3e-15 87.4 198 34.8
Solyc09g066140.3 Solanum lycopersicum HOM05D000851 ORTHO05D003023 1.3e-15 87.4 176 35.2
Sabra13G0039700 Salix brachista HOM05D000851 ORTHO05D003023 1.1e-14 84.3 183 35.5
CANSAT54G2416 Cannabis sativa HOM05D000851 ORTHO05D003023 1.5e-14 84.0 182 35.7
Sabra19G0017500 Salix brachista HOM05D000851 ORTHO05D003023 1.5e-14 84.0 194 35.6
Sed0025170 Sechium edule HOM05D000851 ORTHO05D003023 1.5e-14 84.0 186 37.1
Sabra19G0024800 Salix brachista HOM05D000851 ORTHO05D003023 1.9e-14 83.6 194 35.6
Sed0008916 Sechium edule HOM05D000851 ORTHO05D003023 1.9e-14 83.6 174 36.2
MD04G1227500 Malus domestica HOM05D000851 ORTHO05D003023 2.8e-13 79.7 187 35.8
QL03p028473 Quercus lobata HOM05D000851 ORTHO05D003023 3.7e-13 79.3 190 34.7
Lj7A491T46 Lonicera japonica HOM05D000851 ORTHO05D003023 1.1e-12 77.8 188 32.4
PGSC0003DMG400031422 Solanum tuberosum HOM05D000851 ORTHO05D003023 1.8e-12 77.0 178 33.1
THA.LOC104805830 Tarenaya hassleriana HOM05D000851 ORTHO05D003023 1.8e-12 77.0 185 31.4
CAN.G1536.1 Capsicum annuum HOM05D000851 ORTHO05D003023 2.4e-12 76.6 175 32.6
CAN.G2029.1 Capsicum annuum HOM05D000851 ORTHO05D003023 2.4e-12 76.6 175 32.6
Peaxi162Scf00719g00312 Petunia axillaris HOM05D000851 ORTHO05D003023 4.1e-12 75.9 175 34.3
Os03g0799200 Oryza sativa ssp. japonica HOM05D000851 ORTHO05D003023 5.3e-12 75.5 180 32.8
Hund06944 Selenicereus undatus HOM05D000851 ORTHO05D003023 6.9e-12 75.1 178 33.7
Sabra05G0169500 Salix brachista HOM05D000851 ORTHO05D003023 1.2e-11 74.3 177 34.5
CDE06G0252 Ceratophyllum demersum HOM05D000851 ORTHO05D003023 1.5e-11 73.9 173 34.7
ECA248G1828 Erigeron canadensis HOM05D000851 ORTHO05D003023 1.5e-11 73.9 76 53.9
Oeu058809.1 Olea europaea HOM05D000851 ORTHO05D003023 1.5e-11 73.9 57 59.6
Manes.08G136800 Manihot esculenta HOM05D000851 ORTHO05D003023 2.0e-11 73.6 175 32.0
Medtr7g115350 Medicago truncatula HOM05D000851 ORTHO05D003023 4.5e-11 72.4 179 29.1
Psat3g187960 Pisum sativum HOM05D000851 ORTHO05D003023 5.8e-11 72.0 187 29.4
HPP92_026341 Vanilla planifolia HOM05D000851 ORTHO05D003023 5.8e-11 72.0 199 29.6
MD12G1244200 Malus domestica HOM05D000851 ORTHO05D003023 7.6e-11 71.6 182 34.1
Nitab4.5_0011211g0010 Nicotiana tabacum HOM05D000851 ORTHO05D003023 1.0e-10 71.2 187 29.9
HPP92_016634 Vanilla planifolia HOM05D000851 ORTHO05D003023 1.3e-10 70.9 64 54.7
CDE07G0804 Ceratophyllum demersum HOM05D000851 ORTHO05D003023 2.9e-10 69.7 173 33.5
Sc20g0000480 Simmondsia chinensis HOM05D000851 ORTHO05D003023 3.8e-10 69.3 175 31.4
FvH4_4g34051 Fragaria vesca HOM05D000851 ORTHO05D003049 1.1e-09 67.8 197 27.9
FAN12G2731 Fragaria x ananassa HOM05D000851 ORTHO05D003049 1.1e-09 67.8 197 27.9
RcHm_v2.0_Chr3g0450371 Rosa chinensis HOM05D000851 ORTHO05D003023 1.4e-09 67.4 177 31.1
Sopen01g040730 Solanum pennellii HOM05D000851 ORTHO05D003023 1.4e-09 67.4 182 30.2
FAN02G3896 Fragaria x ananassa HOM05D000851 ORTHO05D003023 2.5e-09 66.6 181 32.0
RcHm_v2.0_Chr4g0443551 Rosa chinensis HOM05D000851 ORTHO05D003049 2.5e-09 66.6 198 28.8
Zm00001eb151710 Zea mays HOM05D000851 ORTHO05D003023 2.5e-09 66.6 174 29.9
FAN22G0251 Fragaria x ananassa HOM05D000851 ORTHO05D003049 3.2e-09 66.2 197 27.4
Nitab4.5_0002247g0120 Nicotiana tabacum HOM05D000851 ORTHO05D003023 3.2e-09 66.2 184 29.9
PGSC0003DMG400027519 Solanum tuberosum HOM05D000851 ORTHO05D003023 3.2e-09 66.2 182 28.6
Ca_09433_v3 Cicer arietinum L. HOM05D000851 ORTHO05D003023 7.1e-09 65.1 183 25.7
FAN05G0024 Fragaria x ananassa HOM05D000851 ORTHO05D003023 7.1e-09 65.1 181 31.5
FAN05G1063 Fragaria x ananassa HOM05D000851 ORTHO05D003023 7.1e-09 65.1 181 31.5
FAN14G2146 Fragaria x ananassa HOM05D000851 ORTHO05D003023 7.1e-09 65.1 181 31.5
FAN14G3846 Fragaria x ananassa HOM05D000851 ORTHO05D003023 7.1e-09 65.1 181 31.5
FAN17G3037 Fragaria x ananassa HOM05D000851 ORTHO05D003049 7.1e-09 65.1 197 26.9
CsaV3_2G003900 Cucumis sativus L. HOM05D000851 ORTHO05D003023 9.3e-09 64.7 186 30.1
MSTRG.16967 Avicennia marina HOM05D000851 ORTHO05D003023 1.2e-08 64.3 169 32.5
Migut.D00396 Erythranthe guttata HOM05D000851 ORTHO05D003023 1.6e-08 63.9 173 30.1
TWI77G0873 Tripterygium wilfordii HOM05D000851 ORTHO05D003049 1.6e-08 63.9 178 29.2
FvH4_6g02500 Fragaria vesca HOM05D000851 ORTHO05D003023 2.1e-08 63.5 181 31.5
Solyc01g097040.4 Solanum lycopersicum HOM05D000851 ORTHO05D003023 2.1e-08 63.5 182 29.1
PSO063G5819 Papaver somniferum HOM05D000851 ORTHO05D003023 2.7e-08 63.2 182 29.1
TPR.G6980 Trifolium pratense HOM05D000851 ORTHO05D003023 2.7e-08 63.2 175 28.0
ECA247G2041 Erigeron canadensis HOM05D000851 ORTHO05D035121 3.5e-08 62.8 170 31.2
HanXRQChr01g0005281 Helianthus annuus HOM05D000851 ORTHO05D003023 6.1e-08 62.0 161 33.5
TAR629G1069 Trochodendron aralioides HOM05D000851 ORTHO05D003960 7.9e-08 61.6 66 43.9
Hma1.2p1_0330F.1_g127460 Hydrangea macrophylla HOM05D000851 ORTHO05D003049 1.3e-07 60.8 194 30.4
CSS0025464 Camellia sinensis var. sinensis HOM05D000851 ORTHO05D003023 1.8e-07 60.5 172 31.4
ClCG02G016870 Citrullus lanatus HOM05D000851 ORTHO05D003023 1.8e-07 60.5 150 32.0
FAN09G3454 Fragaria x ananassa HOM05D000851 ORTHO05D003023 1.8e-07 60.5 181 30.4
Glyma.03G248800 Glycine max HOM05D000851 ORTHO05D003023 1.8e-07 60.5 176 30.1
Manes.15G131400 Manihot esculenta HOM05D000851 ORTHO05D003049 2.3e-07 60.1 207 26.1
Potri.017G129200 Populus trichocarpa HOM05D000851 ORTHO05D003049 2.3e-07 60.1 181 27.6
Migut.B01116 Erythranthe guttata HOM05D000851 ORTHO05D003023 3.0e-07 59.7 166 28.9
Os10g0414800 Oryza sativa ssp. japonica HOM05D000851 ORTHO05D003960 3.0e-07 59.7 193 31.1
MELO3C004405.2 Cucumis melo HOM05D000851 ORTHO05D003023 3.9e-07 59.3 186 30.1
Lsat_1_v5_gn_3_55560 Lactuca sativa HOM05D000851 ORTHO05D003049 5.1e-07 58.9 193 29.5
CDE05G3084 Ceratophyllum demersum HOM05D000851 ORTHO05D003049 6.7e-07 58.5 181 28.7
Actinidia17464 Actinidia chinensis HOM05D000851 ORTHO05D003023 8.7e-07 58.2 162 34.0
Actinidia12375 Actinidia chinensis HOM05D000851 ORTHO05D003049 1.1e-06 57.8 190 29.5
Actinidia36645 Actinidia chinensis HOM05D000851 ORTHO05D003049 1.1e-06 57.8 187 28.3
SalBow8G2324 Salvia bowleyana HOM05D000851 ORTHO05D003023 1.1e-06 57.8 181 26.5
CAN.G134.63 Capsicum annuum HOM05D000851 ORTHO05D003023 1.5e-06 57.4 129 30.2
ClCG01G006360 Citrullus lanatus HOM05D000851 ORTHO05D003049 1.5e-06 57.4 203 27.6
Nitab4.5_0000089g0110 Nicotiana tabacum HOM05D000851 ORTHO05D003049 1.5e-06 57.4 196 27.6
Sabra04G0058500 Salix brachista HOM05D000851 ORTHO05D003049 1.5e-06 57.4 200 26.5
Glyma.05G139600 Glycine max HOM05D000851 ORTHO05D003049 1.9e-06 57.0 195 28.2
PGR142G1822 Punica granatum HOM05D000851 ORTHO05D003023 1.9e-06 57.0 169 32.5
unitig_0.g149 Utricularia gibba HOM05D000851 ORTHO05D003023 1.9e-06 57.0 87 39.1
PSO832G0402 Papaver somniferum HOM05D000851 ORTHO05D003960 2.5e-06 56.6 51 49.0
CANSAT01G2099 Cannabis sativa HOM05D000851 ORTHO05D003049 3.3e-06 56.2 185 29.2
Sabra05G0169300 Salix brachista HOM05D000077 ORTHO05D000552 3.3e-06 56.2 162 36.4
TWI77G0794 Tripterygium wilfordii HOM05D000851 ORTHO05D003049 3.3e-06 56.2 190 25.3
Zm00001eb216510 Zea mays HOM05D000851 ORTHO05D003049 4.3e-06 55.8 198 25.8
Aa31sc20G20 Aethionema arabicum HOM05D000851 ORTHO05D003023 5.7e-06 55.5 176 24.4
AT1G70750 Arabidopsis thaliana HOM05D000851 ORTHO05D003049 5.7e-06 55.5 173 28.3
AUR62018212 Chenopodium quinoa HOM05D000851 ORTHO05D003049 5.7e-06 55.5 181 29.3
MELO3C005294.2 Cucumis melo HOM05D000851 ORTHO05D003049 5.7e-06 55.5 203 28.6
CsaV3_5G028320 Cucumis sativus L. HOM05D000851 ORTHO05D003049 5.7e-06 55.5 203 28.6
MD13G1021300 Malus domestica HOM05D000851 ORTHO05D003049 5.7e-06 55.5 199 27.1
Medtr5g078300 Medicago truncatula HOM05D000851 ORTHO05D003049 5.7e-06 55.5 180 27.8
PSO591G0255 Papaver somniferum HOM05D000851 ORTHO05D003960 5.7e-06 55.5 51 47.1
Sed0002349 Sechium edule HOM05D000851 ORTHO05D003049 5.7e-06 55.5 203 26.1
Atru.chr1.1901 Acer truncatum HOM05D000851 ORTHO05D003049 7.4e-06 55.1 209 25.4
CiPaw.05G193600 Carya illinoinensis HOM05D000851 ORTHO05D003049 7.4e-06 55.1 212 26.9
THA.LOC104822999 Tarenaya hassleriana HOM05D000851 ORTHO05D003049 7.4e-06 55.1 180 27.8
MD16G1022600 Malus domestica HOM05D000851 ORTHO05D003049 9.7e-06 54.7 196 27.6
Manes.17G080700 Manihot esculenta HOM05D000851 ORTHO05D003049 9.7e-06 54.7 58 37.9


User provided reference genes

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