Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G124200 Prunus persica HOM05D006253 ORTHO05D007666 1.9e-87 325.9 174 100.0
MD05G1080500 Malus domestica HOM05D006253 ORTHO05D007666 2.9e-83 312.0 173 95.4
FvH4_2g06110 Fragaria vesca HOM05D006253 ORTHO05D007666 2.1e-81 305.8 174 91.4
FAN24G2487 Fragaria x ananassa HOM05D006253 ORTHO05D007666 2.1e-81 305.8 174 91.4
RcHm_v2.0_Chr6g0257111 Rosa chinensis HOM05D006253 ORTHO05D007666 6.0e-81 304.3 174 90.8
FAN27G3246 Fragaria x ananassa HOM05D006253 ORTHO05D007666 1.4e-77 293.1 180 87.2
Thecc.02G100600 Theobroma cacao HOM05D006253 ORTHO05D007666 1.2e-76 290.0 174 87.4
Gohir.A01G006900 Gossypium hirsutum HOM05D006253 ORTHO05D007666 2.0e-76 289.3 174 87.4
Gorai.002G008000 Gossypium raimondii HOM05D006253 ORTHO05D007666 3.4e-76 288.5 174 87.4
Gohir.D01G007000 Gossypium hirsutum HOM05D006253 ORTHO05D007666 8.4e-75 283.9 174 86.2
QL11p035967 Quercus lobata HOM05D006253 ORTHO05D007666 2.5e-74 282.3 173 85.5
Nn5g30328 Nelumbo nucifera HOM05D006253 ORTHO05D007666 5.5e-74 281.2 174 85.1
COL.COLO4_32658 Corchorus olitorius HOM05D006253 ORTHO05D007666 3.5e-73 278.5 174 84.5
Potri.004G141400 Populus trichocarpa HOM05D006253 ORTHO05D007666 4.6e-73 278.1 175 83.4
CiPaw.05G006400 Carya illinoinensis HOM05D006253 ORTHO05D007666 6.0e-73 277.7 174 82.8
TAR376G0695 Trochodendron aralioides HOM05D006253 ORTHO05D007666 1.0e-72 276.9 174 83.9
Manes.01G064000 Manihot esculenta HOM05D006253 ORTHO05D007666 1.8e-72 276.2 174 82.2
GSVIVG01031749001 Vitis vinifera HOM05D006253 ORTHO05D007666 1.8e-72 276.2 174 83.3
CANSAT25G0326 Cannabis sativa HOM05D006253 ORTHO05D007666 2.3e-72 275.8 174 84.5
Ciclev10029390m.g Citrus clementina HOM05D006253 ORTHO05D007666 3.9e-72 275.0 175 84.6
Sabra04G0093200 Salix brachista HOM05D006253 ORTHO05D007666 3.9e-72 275.0 175 82.3
CANSAT35G0887 Cannabis sativa HOM05D006253 ORTHO05D007666 1.9e-71 272.7 174 83.9
Sc14g0002650 Simmondsia chinensis HOM05D006253 ORTHO05D007666 1.9e-71 272.7 174 81.0
Lj5C209T13 Lonicera japonica HOM05D006253 ORTHO05D007666 5.7e-71 271.2 174 83.3
VMungo1080G0444 Vigna mungo HOM05D006253 ORTHO05D007666 7.4e-71 270.8 174 80.5
arahy.Tifrunner.gnm1.ann1.ETD7FQ Arachis hypogaea HOM05D006253 ORTHO05D007666 1.3e-70 270.0 174 80.5
Hma1.2p1_0370F.1_g137800 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 1.6e-70 269.6 174 82.2
Glyma.04G194000 Glycine max HOM05D006253 ORTHO05D007666 2.8e-70 268.9 174 81.0
Sed0027718 Sechium edule HOM05D006253 ORTHO05D007666 2.8e-70 268.9 174 81.0
Actinidia12952 Actinidia chinensis HOM05D006253 ORTHO05D007666 4.8e-70 268.1 175 81.7
MELO3C019508.2 Cucumis melo HOM05D006253 ORTHO05D007666 1.1e-69 266.9 174 79.9
Lj6g0019810 Lotus japonicus HOM05D006253 ORTHO05D007666 1.1e-69 266.9 174 79.9
Rhsim03G0192100 Rhododendron simsii HOM05D006253 ORTHO05D007666 1.4e-69 266.5 174 80.5
CsaV3_3G018580 Cucumis sativus L. HOM05D006253 ORTHO05D007666 1.2e-68 263.5 174 78.7
Phvul.005G182700 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 1.5e-68 263.1 174 77.6
arahy.Tifrunner.gnm1.ann1.AJN977 Arachis hypogaea HOM05D006253 ORTHO05D007666 5.9e-68 261.2 174 78.7
PGR142G1116 Punica granatum HOM05D006253 ORTHO05D007666 7.6e-68 260.8 175 80.0
TPR.G19178 Trifolium pratense HOM05D006253 ORTHO05D007666 7.6e-68 260.8 172 81.4
Ca_15796_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.0e-67 260.4 174 79.3
Ca_30406_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.0e-67 260.4 174 79.3
Lalb_Chr25g0286231 Lupinus albus HOM05D006253 ORTHO05D007666 1.0e-67 260.4 174 75.9
Eucgr.I01155 Eucalyptus grandis HOM05D006253 ORTHO05D007666 5.0e-67 258.1 175 79.4
TWI79G0152 Tripterygium wilfordii HOM05D006253 ORTHO05D007666 6.5e-67 257.7 175 78.3
arahy.Tifrunner.gnm1.ann1.5N1458 Arachis hypogaea HOM05D006253 ORTHO05D007666 1.1e-66 256.9 195 72.3
TPR.G19494 Trifolium pratense HOM05D006253 ORTHO05D007666 1.1e-66 256.9 170 81.2
SGA_v2.0_scaffold22G09667 Striga asiatica HOM05D006253 ORTHO05D007666 1.4e-66 256.5 174 78.2
Rhsim05G0084000 Rhododendron simsii HOM05D006253 ORTHO05D007666 1.9e-66 256.1 183 76.0
HanXRQChr16g0501301 Helianthus annuus HOM05D006253 ORTHO05D007666 2.5e-66 255.8 174 76.4
Sopen01g050480 Solanum pennellii HOM05D006253 ORTHO05D007666 3.2e-66 255.4 174 77.6
PGSC0003DMG400025894 Solanum tuberosum HOM05D006253 ORTHO05D007666 4.2e-66 255.0 174 77.6
THA.LOC104807358 Tarenaya hassleriana HOM05D006253 ORTHO05D007666 5.5e-66 254.6 175 76.6
CAN.G1041.15 Capsicum annuum HOM05D006253 ORTHO05D007666 9.3e-66 253.8 174 76.4
ECA234G4670 Erigeron canadensis HOM05D006253 ORTHO05D007666 1.2e-65 253.4 174 75.9
Lsat_1_v5_gn_5_112681 Lactuca sativa HOM05D006253 ORTHO05D007666 1.6e-65 253.1 171 76.0
Oeu010588.1 Olea europaea HOM05D006253 ORTHO05D007666 7.9e-65 250.8 174 75.3
Ca_01013_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.1e-63 246.9 169 75.1
EL10Ac5g11497 Beta vulgaris HOM05D006253 ORTHO05D007666 1.9e-63 246.1 174 74.1
MSTRG.27724 Avicennia marina HOM05D006253 ORTHO05D007666 4.3e-63 245.0 174 74.1
PSO782G1871 Papaver somniferum HOM05D006253 ORTHO05D007666 1.7e-62 243.0 169 76.3
Sp7g32200 Schrenkiella parvula HOM05D006253 ORTHO05D007666 1.7e-62 243.0 175 76.6
arahy.Tifrunner.gnm1.ann1.1E2X9I Arachis hypogaea HOM05D006253 ORTHO05D007666 3.7e-62 241.9 152 82.2
Duzib052G0633 Durio zibethinus HOM05D006253 ORTHO05D007666 3.7e-62 241.9 146 87.0
Thhalv10026394m.g Eutrema salsugineum HOM05D006253 ORTHO05D007666 4.8e-62 241.5 175 75.4
AT4G34412 Arabidopsis thaliana HOM05D006253 ORTHO05D007666 6.3e-62 241.1 175 75.4
Carub.0007s0590 Capsella rubella HOM05D006253 ORTHO05D007666 2.4e-61 239.2 175 74.3
AL7G16840 Arabidopsis lyrata HOM05D006253 ORTHO05D007666 5.3e-61 238.0 175 74.9
BcaNung06978 Brassica carinata HOM05D006253 ORTHO05D007666 6.9e-61 237.7 175 75.4
A01p04020 Brassica napus HOM05D006253 ORTHO05D007666 6.9e-61 237.7 175 76.0
CARHR242350 Cardamine hirsuta HOM05D006253 ORTHO05D007666 6.9e-61 237.7 175 73.7
Medtr8g099835 Medicago truncatula HOM05D006253 ORTHO05D007666 6.9e-61 237.7 151 82.1
HPP92_001047 Vanilla planifolia HOM05D006253 ORTHO05D007666 6.9e-61 237.7 174 73.0
BraA03t15367Z Brassica rapa HOM05D006253 ORTHO05D007666 9.1e-61 237.3 175 75.4
C07p60590 Brassica napus HOM05D006253 ORTHO05D007666 2.0e-60 236.1 175 74.9
Aa31LG2G16330 Aethionema arabicum HOM05D006253 ORTHO05D007666 2.6e-60 235.7 175 73.7
Os01g0142200 Oryza sativa ssp. japonica HOM05D006253 ORTHO05D007666 7.7e-60 234.2 175 73.1
FAN20G2826 Fragaria x ananassa HOM05D006253 ORTHO05D007666 2.2e-59 232.6 174 74.1
Atru.chr5.2705 Acer truncatum HOM05D006253 ORTHO05D007666 2.9e-59 232.3 176 75.6
Zm00001eb124670 Zea mays HOM05D006253 ORTHO05D007666 1.1e-58 230.3 175 72.0
MBI02_g02992_MAGBIO Magnolia biondii HOM05D006253 ORTHO05D007666 5.5e-58 228.0 146 83.6
Psat5g098280 Pisum sativum HOM05D006253 ORTHO05D007666 1.6e-57 226.5 146 80.8
Glyma.06G172100 Glycine max HOM05D006253 ORTHO05D007666 4.7e-57 224.9 146 78.8
HanXRQChr10g0319791 Helianthus annuus HOM05D006253 ORTHO05D007666 8.8e-56 220.7 152 77.0
Solyc01g108260.4 Solanum lycopersicum HOM05D006253 ORTHO05D007666 2.0e-55 219.5 151 76.8
PSO478G4849 Papaver somniferum HOM05D006253 ORTHO05D007666 9.7e-55 217.2 146 80.1
CSS0003209 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 2.2e-54 216.1 144 79.2
Sed0021593 Sechium edule HOM05D006253 ORTHO05D007666 1.4e-53 213.4 174 66.7
DCAR_007862 Daucus carota HOM05D006253 ORTHO05D007666 1.2e-52 210.3 146 76.0
FAN15G3440 Fragaria x ananassa HOM05D006253 ORTHO05D007666 1.2e-52 210.3 174 69.5
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 1.5e-52 209.9 145 78.6
Mapoly0083s0082 Marchantia polymorpha HOM05D006253 ORTHO05D007666 1.5e-52 209.9 167 64.7
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 3.4e-52 208.8 152 75.7
AagrBONN_evm.TU.Sc2ySwM_344.4457 Anthoceros agrestis HOM05D006253 ORTHO05D007666 4.5e-52 208.4 167 61.7
Hund00335 Selenicereus undatus HOM05D006253 ORTHO05D007666 3.8e-51 205.3 174 65.5
SMO351G0094 Selaginella moellendorffii HOM05D006253 ORTHO05D007666 6.1e-49 198.0 167 62.9
Pp3c22_3990 Physcomitrium patens HOM05D006253 ORTHO05D007666 2.6e-47 192.6 167 58.7
CBR_g38557 Chara braunii HOM05D006253 ORTHO05D007666 1.2e-41 173.7 167 55.1
AUR62029937 Chenopodium quinoa HOM05D006253 ORTHO05D007666 2.3e-40 169.5 122 73.0
Phvul.002G266500 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 1.5e-39 166.8 113 76.1
AUR62033746 Chenopodium quinoa HOM05D006253 ORTHO05D007666 7.5e-39 164.5 146 62.3
BolC1t00422H Brassica oleracea HOM05D006253 ORTHO05D007666 1.1e-37 160.6 116 76.7
CSS0033941 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 1.4e-37 160.2 141 68.1
MD10G1094500 Malus domestica HOM05D006253 ORTHO05D007666 7.0e-37 157.9 97 87.6
SEGI_00233 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 1.2e-36 157.1 113 69.9
Medtr2g105210 Medicago truncatula HOM05D006253 ORTHO05D007666 8.5e-35 151.0 125 68.0
Prupe.4G258000 Prunus persica HOM05D006253 ORTHO05D007666 1.8e-32 143.3 117 67.5
Prupe.6G016400 Prunus persica HOM05D006253 ORTHO05D007666 5.2e-32 141.7 128 64.8
C01p04340 Brassica napus HOM05D006253 ORTHO05D007666 8.8e-32 141.0 101 78.2
vmacro19500 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 2.7e-28 129.4 166 51.8
Cc02_g18770 Coffea canephora HOM05D006253 ORTHO05D007666 4.5e-28 128.6 91 73.6
A03p62890 Brassica napus HOM05D000211 ORTHO05D007666 1.9e-26 123.2 95 70.5
Cre01.g030950 Chlamydomonas reinhardtii HOM05D006253 ORTHO05D007666 2.5e-26 122.9 173 41.6
MCO10G211 Micromonas commoda HOM05D006253 ORTHO05D007666 2.5e-26 122.9 162 43.8
Gorai.005G238200 Gossypium raimondii HOM05D006253 ORTHO05D007666 7.2e-26 121.3 104 63.5
vmacro06019 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 3.6e-25 119.0 97 71.1
Ah.10g034240 Amaranthus hybridus HOM05D006253 ORTHO05D007666 6.1e-25 118.2 88 70.5
PRCOL_00001305 Prasinoderma coloniale HOM05D006253 ORTHO05D007666 4.4e-23 112.1 179 41.9
SalBow3G2580 Salvia bowleyana HOM05D006253 ORTHO05D007666 4.4e-23 112.1 122 54.1
ClCG05G009990 Citrullus lanatus HOM05D006253 ORTHO05D007666 7.8e-20 101.3 123 50.4
Sabra09G0078100 Salix brachista HOM05D006253 ORTHO05D007666 1.0e-19 100.9 88 68.2
Gohir.D02G210201 Gossypium hirsutum HOM05D006253 ORTHO05D007666 1.7e-19 100.1 104 56.7
Hma1.2p1_0804F.1_g221060 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 1.1e-18 97.4 73 74.0
Prupe.2G172700 Prunus persica HOM05D006253 ORTHO05D007666 1.4e-16 90.5 51 90.2
Prupe.4G259300 Prunus persica HOM05D006253 ORTHO05D007666 5.2e-16 88.6 88 60.2
Hma1.2p1_0674F.1_g201500 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 4.4e-15 85.5 57 77.2
Migut.N01188 Erythranthe guttata HOM05D006253 ORTHO05D007666 1.8e-13 80.1 55 72.7
Oeu025576.2 Olea europaea HOM05D006253 ORTHO05D007666 7.0e-13 78.2 64 65.6
SEGI_00525 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 7.8e-12 74.7 57 66.7
Aqoxy5G01240 Aquilegia oxysepala HOM05D006253 ORTHO05D007666 1.5e-10 70.5 59 62.7
Migut.N01189 Erythranthe guttata HOM05D006253 ORTHO05D007666 1.9e-10 70.1 47 76.6


User provided reference genes

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