Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 3936.3 1984 100.0
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 3247.6 1986 83.0
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 3225.3 1961 83.6
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 3027.3 1988 78.3
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2867.8 2020 74.4
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2859.3 2013 74.4
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2781.5 2011 73.2
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 2562.3 2039 66.1
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 2467.6 2005 64.5
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2416.3 2007 63.3
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2404.4 2023 63.3
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2398.6 1999 63.2
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 2369.3 1993 62.3
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 2369.0 1712 72.4
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2363.2 2004 62.3
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2356.3 2006 62.8
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 2355.1 2004 63.1
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 2352.8 1996 62.0
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 2349.3 2008 63.0
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 2344.7 2015 62.2
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2342.8 2019 62.5
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2341.6 1714 72.0
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2304.2 2008 61.8
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2304.2 2040 60.7
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2275.0 1999 61.4
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 2265.0 2035 60.6
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2261.5 2025 60.1
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2233.0 2004 59.1
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2219.9 2037 59.0
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2218.0 2002 58.4
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 2197.9 2029 59.3
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 2160.6 2015 58.7
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2156.7 2017 59.1
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 2155.2 2013 57.4
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 2139.8 2009 57.5
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 2139.4 2011 57.4
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 2134.0 2012 56.9
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 2119.4 2041 57.0
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 2090.8 2034 56.5
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 2084.7 2015 56.4
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 2082.4 2003 56.8
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 2067.7 2015 55.7
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 2042.7 2007 55.9
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 2030.8 2015 55.4
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 2026.9 2014 55.5
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 2021.9 2003 55.3
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1999.6 2038 55.4
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1994.9 2004 54.7
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1994.9 2012 55.2
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1956.0 2055 53.8
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1931.4 2019 52.7
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1927.5 2023 52.6
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1872.8 1936 53.7
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1850.1 2006 50.5
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1845.5 1973 53.1
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1845.5 2001 51.8
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1844.7 2006 51.9
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1833.2 2026 51.0
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1832.8 2026 51.4
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1818.1 2012 50.6
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1815.4 2021 51.8
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1805.4 2014 50.3
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1801.2 2033 50.5
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1785.0 2068 49.5
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1754.2 2007 50.7
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1748.0 1938 51.1
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1739.2 1999 50.0
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1734.2 2004 50.0
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1731.5 2063 48.5
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1729.1 2000 50.1
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1728.8 1938 50.5
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1714.9 2002 49.7
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1712.6 1996 49.8
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1710.7 2000 49.5
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1706.4 2001 49.8
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1692.9 2006 49.2
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1687.2 2005 47.4
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1684.5 2004 49.3
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1684.1 2004 49.2
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1683.7 1787 51.9
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1681.8 2004 49.2
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1679.5 2004 49.1
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1666.0 1945 49.5
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1656.0 2032 47.2
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1653.3 2024 48.3
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1642.9 2145 45.1
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1622.4 1466 60.1
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1613.6 1467 60.1
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1609.3 2004 47.6
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1604.3 1950 47.7
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1600.1 1991 47.1
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1486.5 2012 45.0
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1367.4 2095 41.6
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 0.0e+00 1363.2 1202 60.1
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1352.4 1756 46.4
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 0.0e+00 1193.3 1701 44.4
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 0.0e+00 1176.4 2024 37.4
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 0.0e+00 1084.3 2126 34.6
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 7.9e-286 988.4 1684 37.9
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 1.6e-262 911.0 1491 37.7
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 2.3e-245 854.0 2162 31.4
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 1.3e-224 785.0 675 64.1
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 4.7e-222 776.5 2120 31.5
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 1.1e-221 775.4 1996 32.2
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 2.3e-176 624.8 1208 35.3
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.3e-163 582.4 1697 29.1
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 2.8e-158 564.7 1903 27.4
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.5e-156 557.8 511 59.7
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.2e-147 528.5 1134 35.0
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 3.4e-143 514.6 406 64.0
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 4.4e-143 514.2 277 93.9
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 1.8e-136 492.3 341 73.6
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.5e-132 478.0 443 56.4
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 4.3e-122 444.5 387 57.4
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 5.8e-119 434.1 365 62.7
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 1.0e-107 396.7 276 71.7
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 3.6e-89 335.1 514 42.0
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 2.7e-84 318.9 198 79.3
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 3.9e-75 288.5 373 45.3
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 1.8e-72 279.6 262 59.5
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 2.9e-62 245.7 215 59.1
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 7.9e-60 237.7 190 62.6
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 1.4e-53 216.9 180 61.7
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 1.3e-49 203.8 505 32.1
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 1.2e-39 170.6 322 37.0
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 3.6e-36 159.1 178 55.6
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.1e-32 147.5 83 79.5
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 4.7e-28 132.1 326 28.2
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 2.0e-26 126.7 217 35.9
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 2.6e-26 126.3 67 88.1
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 7.5e-26 124.8 67 86.6
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 9.8e-26 124.4 267 33.0
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 9.1e-24 117.9 601 23.0
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 1.6e-23 117.1 64 87.5
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 2.9e-22 112.8 106 54.7
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.2e-20 107.5 68 75.0
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 2.7e-20 106.3 105 55.2
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 3.6e-20 105.9 68 75.0
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 1.8e-19 103.6 68 85.3
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 6.8e-19 101.7 102 48.0
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 2.0e-15 90.1 56 80.4
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 4.3e-13 82.4 125 40.8
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.8e-11 77.0 55 67.3
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 7.0e-08 65.1 46 65.2


User provided reference genes

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