Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G116500 Prunus persica HOM05D002914 ORTHO05D003196 4.2e-44 181.8 160 100.0
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 4.3e-25 118.6 80 65.0
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 3.7e-24 115.5 78 87.2
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 8.1e-24 114.4 84 81.0
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.1e-23 112.5 83 67.5
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 4.5e-22 108.6 78 75.6
FvH4_2g06840 Fragaria vesca HOM05D002914 ORTHO05D003196 1.7e-21 106.7 85 78.8
FAN24G0092 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.2e-21 106.3 86 77.9
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 3.8e-21 105.5 83 57.8
FAN15G1103 Fragaria x ananassa HOM05D002914 ORTHO05D003196 6.4e-21 104.8 85 77.6
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 1.9e-20 103.2 78 74.4
Glyma.02G134900 Glycine max HOM05D002914 ORTHO05D003196 2.5e-20 102.8 77 83.1
FAN20G0574 Fragaria x ananassa HOM05D002914 ORTHO05D003196 3.2e-20 102.4 85 76.5
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 7.1e-20 101.3 81 76.5
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 9.3e-20 100.9 91 52.7
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 1.6e-19 100.1 81 59.3
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 2.1e-19 99.8 82 57.3
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 2.1e-19 99.8 76 65.8
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 2.1e-19 99.8 77 61.0
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 2.1e-19 99.8 82 75.6
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 3.5e-19 99.0 79 59.5
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 4.6e-19 98.6 78 67.9
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 6.0e-19 98.2 81 64.2
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 6.0e-19 98.2 78 70.5
COL.COLO4_11718 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.0e-18 97.4 83 77.1
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 2.3e-18 96.3 81 71.6
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 2.3e-18 96.3 78 76.9
QL11p038331 Quercus lobata HOM05D002914 ORTHO05D003196 2.3e-18 96.3 75 84.0
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 2.3e-18 96.3 82 57.3
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.9e-18 95.5 80 56.2
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.9e-18 95.5 80 56.2
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 8.7e-18 94.4 83 71.1
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 8.7e-18 94.4 80 53.8
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 1.1e-17 94.0 85 54.1
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 1.1e-17 94.0 80 62.5
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 1.1e-17 94.0 80 62.5
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 1.1e-17 94.0 81 76.5
CiPaw.05G054900 Carya illinoinensis HOM05D002914 ORTHO05D003196 2.5e-17 92.8 76 77.6
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.5e-17 92.8 87 64.4
Ca_18662_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 4.3e-17 92.0 83 68.7
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 4.3e-17 92.0 80 60.0
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.6e-17 91.7 87 57.5
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 5.6e-17 91.7 79 57.0
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 5.6e-17 91.7 80 57.5
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 7.4e-17 91.3 78 52.6
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 9.6e-17 90.9 76 75.0
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.3e-16 90.5 83 50.6
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 2.1e-16 89.7 88 68.2
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 2.1e-16 89.7 85 56.5
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.1e-16 89.7 83 50.6
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 4.8e-16 88.6 78 51.3
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 4.8e-16 88.6 83 49.4
CiPaw.06G141400 Carya illinoinensis HOM05D002914 ORTHO05D003196 6.2e-16 88.2 82 75.6
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 6.2e-16 88.2 80 51.2
Manes.15G143200 Manihot esculenta HOM05D002914 ORTHO05D003196 8.2e-16 87.8 74 79.7
Sc08g0000120 Simmondsia chinensis HOM05D002914 ORTHO05D003196 1.8e-15 86.7 80 70.0
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.8e-15 86.7 79 54.4
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 2.4e-15 86.3 69 73.9
arahy.Tifrunner.gnm1.ann1.ZME7HS Arachis hypogaea HOM05D002914 ORTHO05D003196 2.4e-15 86.3 69 73.9
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 2.4e-15 86.3 80 65.0
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 4.0e-15 85.5 73 61.6
SalBow6G6648 Salvia bowleyana HOM05D002914 ORTHO05D003196 4.0e-15 85.5 81 67.9
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 6.9e-15 84.7 70 64.3
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 6.9e-15 84.7 70 68.6
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 9.0e-15 84.3 81 71.6
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 9.0e-15 84.3 82 73.2
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 9.0e-15 84.3 75 65.3
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 9.0e-15 84.3 82 73.2
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 9.0e-15 84.3 82 73.2
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 9.0e-15 84.3 70 58.6
Psat7g121600 Pisum sativum HOM05D002914 ORTHO05D003196 9.0e-15 84.3 76 72.4
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 9.0e-15 84.3 78 48.7
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.5e-14 83.6 81 50.6
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.5e-14 83.6 76 51.3
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 1.5e-14 83.6 80 51.2
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 1.5e-14 83.6 80 55.0
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 2.6e-14 82.8 79 50.6
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 4.5e-14 82.0 71 50.7
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 4.5e-14 82.0 77 54.5
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 7.6e-14 81.3 102 52.0
Ciclev10002811m.g Citrus clementina HOM05D002914 ORTHO05D003196 1.0e-13 80.9 77 62.3
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.0e-13 80.9 70 54.3
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 1.3e-13 80.5 79 50.6
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 2.9e-13 79.3 81 54.3
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 3.8e-13 79.0 82 48.8
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 8.4e-13 77.8 73 52.1
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 1.1e-12 77.4 78 53.8
CSS0030933 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.4e-12 77.0 85 62.4
CSS0032479 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.4e-12 77.0 85 62.4
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 1.4e-12 77.0 69 55.1
Prupe.1G441900 Prunus persica HOM05D002914 ORTHO05D003196 1.9e-12 76.6 78 67.9
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 3.2e-12 75.9 80 43.8
Ah.01g020080 Amaranthus hybridus HOM05D002914 ORTHO05D003196 5.5e-12 75.1 82 56.1
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 5.5e-12 75.1 81 51.9
Sed0007891 Sechium edule HOM05D002914 ORTHO05D003196 5.5e-12 75.1 78 61.5
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 7.1e-12 74.7 81 48.1
Manes.05G170100 Manihot esculenta HOM05D002914 ORTHO05D003196 7.1e-12 74.7 75 57.3
PSO170G6047 Papaver somniferum HOM05D002914 ORTHO05D003196 7.1e-12 74.7 81 63.0
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 1.2e-11 73.9 78 46.2
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 1.2e-11 73.9 81 50.6
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 1.2e-11 73.9 70 50.0
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 2.1e-11 73.2 83 43.4
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 2.7e-11 72.8 78 47.4
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 2.7e-11 72.8 70 50.0
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 3.5e-11 72.4 42 61.9
CSS0043526 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 3.5e-11 72.4 41 75.6
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 7.9e-11 71.2 80 45.0
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.0e-10 70.9 78 39.7
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 1.0e-10 70.9 61 54.1
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.3e-10 70.5 42 69.0
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.3e-10 70.5 42 69.0
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.3e-10 70.5 42 69.0
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 1.8e-10 70.1 79 49.4
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.3e-10 69.7 80 43.8
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 2.3e-10 69.7 80 43.8
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 3.0e-10 69.3 82 42.7
SEGI_40351 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 3.9e-10 68.9 78 65.4
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.1e-10 68.6 78 38.5
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 6.7e-10 68.2 85 41.2
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 6.7e-10 68.2 80 42.5
Cpa.g.sc376.2 Carica papaya HOM05D002914 ORTHO05D003196 1.1e-09 67.4 76 43.4
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 1.1e-09 67.4 85 42.4
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.1e-09 67.4 80 42.5
RcHm_v2.0_Chr6g0306971 Rosa chinensis HOM05D002914 ORTHO05D003196 2.5e-09 66.2 76 53.9
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 3.3e-09 65.9 99 38.4
COL.COLO4_26446 Corchorus olitorius HOM05D002914 ORTHO05D003196 5.7e-09 65.1 81 63.0
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 7.4e-09 64.7 78 41.0
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 9.7e-09 64.3 41 61.0
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 2.8e-08 62.8 82 36.6
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 4.8e-08 62.0 42 59.5
Oeu007255.1 Olea europaea HOM05D002914 ORTHO05D003196 4.8e-08 62.0 76 65.8
Ah.05g168910 Amaranthus hybridus HOM05D002914 ORTHO05D003196 1.1e-07 60.8 74 37.8
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 1.1e-07 60.8 79 36.7
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 1.1e-07 60.8 92 35.9
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 1.4e-07 60.5 76 40.8
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 1.8e-07 60.1 77 39.0
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 2.4e-07 59.7 79 36.7
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 2.4e-07 59.7 83 39.8
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 3.1e-07 59.3 83 39.8
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 4.1e-07 58.9 83 39.8
SEGI_00607 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 5.3e-07 58.5 40 60.0
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 6.9e-07 58.2 81 34.6
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 9.0e-07 57.8 79 39.2
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 9.0e-07 57.8 80 41.2
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 1.2e-06 57.4 74 41.9
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 1.5e-06 57.0 80 40.0
Peaxi162Scf00003g01911 Petunia axillaris HOM05D002914 ORTHO05D003196 2.0e-06 56.6 83 39.8
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 2.6e-06 56.2 82 39.0
Lj4g0007898 Lotus japonicus HOM05D002914 ORTHO05D003196 2.6e-06 56.2 80 40.0
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 2.6e-06 56.2 43 55.8
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 3.4e-06 55.8 42 59.5
FvH4_6g23590 Fragaria vesca HOM05D002914 ORTHO05D003196 5.9e-06 55.1 42 57.1
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 7.7e-06 54.7 83 38.6
MD14G1070500 Malus domestica HOM05D002914 ORTHO05D003196 7.7e-06 54.7 79 34.2
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 7.7e-06 54.7 81 40.7
Psat3g072240 Pisum sativum HOM05D002914 ORTHO05D003196 1.0e-05 54.3 82 37.8
RcHm_v2.0_Chr3g0481701 Rosa chinensis HOM05D002914 ORTHO05D003196 1.0e-05 54.3 42 52.4


User provided reference genes

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