Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 2.4e-226 788.5 394 100.0
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 2.1e-206 722.2 397 90.7
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 1.4e-205 719.5 394 88.8
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 2.3e-205 718.8 394 89.1
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 2.3e-205 718.8 394 90.1
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 5.2e-205 717.6 394 89.8
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 1.5e-196 689.5 393 84.7
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 9.5e-191 670.2 394 82.7
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 1.4e-189 666.4 393 83.0
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 1.2e-188 663.3 394 82.2
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 3.6e-182 641.7 407 78.1
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 2.2e-179 632.5 404 77.5
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 4.1e-178 628.2 404 76.7
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 7.0e-178 627.5 394 78.4
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 3.5e-177 625.2 404 77.7
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 6.0e-177 624.4 405 76.5
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 6.0e-177 624.4 403 77.2
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 1.3e-176 623.2 394 77.4
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 2.3e-176 622.5 394 78.7
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 2.3e-176 622.5 380 79.5
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 3.0e-176 622.1 403 77.4
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 3.9e-176 621.7 399 77.2
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 1.1e-175 620.2 413 75.3
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 1.5e-175 619.8 370 79.7
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 3.3e-175 618.6 401 76.1
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 4.3e-175 618.2 404 75.2
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 1.2e-174 616.7 403 76.2
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 6.8e-173 610.9 396 76.5
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 8.9e-173 610.5 402 75.1
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 1.5e-172 609.8 372 78.2
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 5.8e-172 607.8 401 75.6
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 7.5e-172 607.4 427 71.9
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 6.4e-171 604.4 377 80.6
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 8.3e-171 604.0 368 78.5
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 1.4e-170 603.2 397 75.3
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 1.9e-170 602.8 356 80.6
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 1.9e-170 602.8 356 80.6
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 7.1e-170 600.9 394 73.9
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 1.6e-169 599.7 356 80.3
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 2.1e-169 599.4 396 74.2
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 3.5e-169 598.6 395 74.9
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 3.5e-169 598.6 397 74.8
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 1.3e-168 596.7 401 75.8
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 1.7e-168 596.3 395 73.9
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 2.3e-168 595.9 356 80.1
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 2.3e-168 595.9 412 72.6
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 3.0e-168 595.5 398 74.6
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 3.0e-168 595.5 395 74.7
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 3.0e-168 595.5 395 73.4
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 3.9e-168 595.1 381 75.6
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 5.1e-168 594.7 404 73.0
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 6.6e-168 594.3 398 73.6
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 8.6e-168 594.0 402 72.4
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 8.6e-168 594.0 394 73.4
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 1.5e-167 593.2 349 81.4
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.5e-167 592.4 377 79.3
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 3.3e-167 592.0 398 74.4
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 7.3e-167 590.9 402 74.4
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 1.6e-166 589.7 400 73.8
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 1.6e-166 589.7 402 73.1
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 2.1e-166 589.3 397 73.6
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 2.1e-166 589.3 399 72.4
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 2.8e-166 589.0 399 72.4
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 3.6e-166 588.6 398 72.9
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 4.7e-166 588.2 347 81.0
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 4.7e-166 588.2 361 79.2
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 6.2e-166 587.8 406 73.2
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 1.4e-165 586.6 349 80.2
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 2.3e-165 585.9 336 83.9
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 6.8e-165 584.3 347 79.5
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 5.8e-164 581.3 399 72.4
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 2.2e-163 579.3 358 79.9
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 8.4e-163 577.4 379 77.0
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 5.4e-162 574.7 401 70.8
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 7.1e-162 574.3 379 75.2
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 2.7e-161 572.4 422 69.4
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 3.5e-161 572.0 352 80.1
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 3.5e-161 572.0 405 72.1
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 3.5e-161 572.0 406 72.7
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 7.8e-161 570.9 400 72.8
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 1.0e-160 570.5 394 72.3
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 1.3e-160 570.1 394 71.6
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 1.7e-160 569.7 383 73.9
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 2.3e-160 569.3 405 71.4
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 3.9e-160 568.5 377 77.2
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 8.6e-160 567.4 405 71.1
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 1.1e-159 567.0 399 69.9
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 1.5e-159 566.6 360 76.4
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.6e-158 563.1 352 79.3
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 2.8e-158 562.4 402 70.9
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.8e-157 559.7 426 68.8
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 5.2e-157 558.1 327 81.3
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 9.0e-157 557.4 399 70.2
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 1.3e-155 553.5 353 76.2
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 1.3e-155 553.5 349 75.6
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 1.1e-154 550.4 344 75.3
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 1.2e-153 547.0 382 71.5
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 2.7e-153 545.8 393 68.4
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 4.6e-153 545.0 356 74.2
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 7.8e-153 544.3 314 82.2
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 1.0e-152 543.9 355 73.8
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 1.3e-152 543.5 351 75.2
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 5.6e-151 538.1 349 75.1
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 7.3e-151 537.7 402 67.7
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 3.6e-150 535.4 406 69.2
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 2.4e-149 532.7 314 81.2
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 2.0e-148 529.6 344 74.1
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 7.6e-148 527.7 399 66.4
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 3.8e-147 525.4 371 69.8
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 4.9e-147 525.0 366 73.0
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 7.9e-145 517.7 463 60.5
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 5.6e-143 511.5 405 62.5
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 9.9e-140 500.7 398 65.8
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 7.1e-138 494.6 573 48.7
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 9.3e-138 494.2 402 66.9
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 4.0e-133 478.8 344 66.3
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 4.0e-133 478.8 293 79.5
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 3.8e-131 472.2 346 65.9
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 2.5e-119 433.0 275 77.5
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 1.0e-75 288.1 194 75.3
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 8.3e-70 268.5 373 43.7
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 2.7e-68 263.5 147 81.6
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 6.4e-62 242.3 211 57.8
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 5.6e-58 229.2 309 47.2
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 3.7e-54 216.5 190 62.1
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 3.2e-53 213.4 143 71.3
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 3.3e-42 176.8 112 75.9
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 4.9e-38 162.9 112 72.3
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 1.7e-35 154.5 350 30.6
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.1e-32 145.2 113 66.4
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 9.9e-31 138.7 107 66.4
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 2.8e-25 120.6 66 80.3
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 1.1e-18 98.6 53 83.0
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 1.0e-11 75.5 93 48.4
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 3.3e-10 70.5 64 56.2
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 1.3e-09 68.6 45 66.7


User provided reference genes

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