Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G111300 Prunus persica HOM05D006906 ORTHO05D008578 8.8e-37 156.4 75 100.0
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 6.1e-30 133.7 71 90.1
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 8.5e-24 113.2 75 74.7
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 1.0e-21 106.3 75 70.7
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 8.2e-19 96.7 71 69.0
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 8.2e-19 96.7 71 69.0
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 1.1e-18 96.3 72 70.8
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 1.4e-18 95.9 71 66.2
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 7.0e-18 93.6 71 64.8
FAN08G0950 Fragaria x ananassa HOM05D006906 ORTHO05D008578 7.0e-18 93.6 71 66.2
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 1.2e-17 92.8 69 65.2
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 3.5e-17 91.3 71 64.8
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 3.5e-17 91.3 71 64.8
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 3.5e-17 91.3 71 64.8
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 5.9e-17 90.5 69 65.2
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 1.0e-16 89.7 62 67.7
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 1.0e-16 89.7 69 62.3
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 1.3e-16 89.4 62 67.7
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 1.3e-16 89.4 71 63.4
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 1.7e-16 89.0 69 65.2
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 2.2e-16 88.6 69 62.3
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 2.2e-16 88.6 69 62.3
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 2.9e-16 88.2 42 97.6
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 3.8e-16 87.8 62 66.1
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 3.8e-16 87.8 71 63.4
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 3.8e-16 87.8 62 66.1
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 5.0e-16 87.4 68 67.6
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 1.1e-15 86.3 45 82.2
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 1.1e-15 86.3 45 82.2
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 1.1e-15 86.3 69 60.9
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 1.1e-15 86.3 61 67.2
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 2.5e-15 85.1 61 68.9
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 2.5e-15 85.1 68 66.2
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 2.5e-15 85.1 61 67.2
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 3.2e-15 84.7 45 80.0
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 3.2e-15 84.7 75 60.0
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 4.2e-15 84.3 48 83.3
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 5.5e-15 84.0 70 62.9
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 5.5e-15 84.0 45 82.2
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 7.2e-15 83.6 51 78.4
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 7.2e-15 83.6 69 60.9
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 7.2e-15 83.6 68 64.7
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 9.4e-15 83.2 62 66.1
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 9.4e-15 83.2 64 65.6
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 1.2e-14 82.8 69 56.5
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 1.2e-14 82.8 71 60.6
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 2.7e-14 81.6 41 87.8
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 1.0e-13 79.7 57 70.2
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 1.8e-13 79.0 49 77.6
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 2.3e-13 78.6 69 60.9
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 3.0e-13 78.2 64 59.4
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 3.0e-13 78.2 44 77.3
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 3.0e-13 78.2 70 57.1
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 4.0e-13 77.8 52 73.1
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 4.0e-13 77.8 41 80.5
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 4.0e-13 77.8 41 80.5
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 5.2e-13 77.4 54 66.7
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 6.8e-13 77.0 62 66.1
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 8.8e-13 76.6 56 64.3
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 1.2e-12 76.3 66 60.6
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 1.2e-12 76.3 78 56.4
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 1.2e-12 76.3 78 56.4
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 1.2e-12 76.3 66 56.1
Thecc.08G080900 Theobroma cacao HOM05D006906 ORTHO05D008578 1.2e-12 76.3 64 59.4
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 1.5e-12 75.9 67 61.2
Gohir.D05G217300 Gossypium hirsutum HOM05D006906 ORTHO05D008578 2.0e-12 75.5 54 64.8
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 3.4e-12 74.7 40 80.0
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 3.4e-12 74.7 40 80.0
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 3.4e-12 74.7 55 70.9
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 3.4e-12 74.7 40 80.0
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 4.4e-12 74.3 38 84.2
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 5.7e-12 73.9 64 62.5
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 5.7e-12 73.9 43 74.4
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 5.7e-12 73.9 57 61.4
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 7.5e-12 73.6 57 63.2
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 9.7e-12 73.2 54 64.8
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 9.7e-12 73.2 68 55.9
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 1.3e-11 72.8 68 52.9
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 1.7e-11 72.4 54 66.7
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 2.2e-11 72.0 62 53.2
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 2.2e-11 72.0 37 86.5
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 2.8e-11 71.6 60 60.0
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 2.8e-11 71.6 38 81.6
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 2.8e-11 71.6 42 76.2
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 3.7e-11 71.2 44 65.9
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 4.8e-11 70.9 43 74.4
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 1.1e-10 69.7 62 58.1
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 1.4e-10 69.3 61 60.7
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 1.4e-10 69.3 44 70.5
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 1.4e-10 69.3 38 84.2
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 1.8e-10 68.9 56 58.9
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 2.4e-10 68.6 43 74.4
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 2.4e-10 68.6 36 86.1
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 2.4e-10 68.6 36 86.1
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 4.1e-10 67.8 56 60.7
Migut.N02816 Erythranthe guttata HOM05D006906 ORTHO05D008578 9.1e-10 66.6 51 66.7
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 1.6e-09 65.9 58 53.4
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 3.5e-09 64.7 58 56.9
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 3.5e-09 64.7 58 56.9
AUR62035774 Chenopodium quinoa HOM05D006906 ORTHO05D008578 3.5e-09 64.7 67 49.3
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 5.9e-09 63.9 41 73.2
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 7.7e-09 63.5 41 70.7
Manes.05G185700 Manihot esculenta HOM05D006906 ORTHO05D008578 1.0e-08 63.2 40 70.0
SalBow2G0068 Salvia bowleyana HOM05D006906 ORTHO05D008578 1.3e-08 62.8 40 67.5
Medtr3g110640 Medicago truncatula HOM05D006906 ORTHO05D008578 3.8e-08 61.2 41 70.7
BolC9t58763H Brassica oleracea HOM05D006906 ORTHO05D008578 5.0e-08 60.8 58 55.2
SEGI_12109 Sequoiadendron giganteum HOM05D006906 ORTHO05D008578 9.4e-07 56.6 38 68.4
CBR_g48804 Chara braunii HOM05D006906 ORTHO05D008578 3.6e-06 54.7 37 62.2


User provided reference genes

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